Clone Name | rbastl26h07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK061883.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F02, full insert sequence Length = 1381 Score = 188 bits (95), Expect = 7e-45 Identities = 158/179 (88%) Strand = Plus / Minus Query: 136 ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195 |||||||||||| || ||||| || ||||| |||||||| |||||||||| ||||||||| Sbjct: 1193 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 1134 Query: 196 attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255 |||||| | || || ||||||||||||||||||||||| |||||||||||| |||| || Sbjct: 1133 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 1074 Query: 256 atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314 ||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct: 1073 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 1015
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 188 bits (95), Expect = 7e-45 Identities = 158/179 (88%) Strand = Plus / Plus Query: 136 ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195 |||||||||||| || ||||| || ||||| |||||||| |||||||||| ||||||||| Sbjct: 42586004 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 42586063 Query: 196 attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255 |||||| | || || ||||||||||||||||||||||| |||||||||||| |||| || Sbjct: 42586064 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 42586123 Query: 256 atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314 ||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct: 42586124 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 42586182
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458E05 Length = 193577 Score = 188 bits (95), Expect = 7e-45 Identities = 158/179 (88%) Strand = Plus / Plus Query: 136 ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195 |||||||||||| || ||||| || ||||| |||||||| |||||||||| ||||||||| Sbjct: 106887 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 106946 Query: 196 attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255 |||||| | || || ||||||||||||||||||||||| |||||||||||| |||| || Sbjct: 106947 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 107006 Query: 256 atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314 ||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct: 107007 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 107065
>dbj|AK120672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160L10, full insert sequence Length = 4082 Score = 188 bits (95), Expect = 7e-45 Identities = 158/179 (88%) Strand = Plus / Minus Query: 136 ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195 |||||||||||| || ||||| || ||||| |||||||| |||||||||| ||||||||| Sbjct: 1584 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 1525 Query: 196 attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255 |||||| | || || ||||||||||||||||||||||| |||||||||||| |||| || Sbjct: 1524 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 1465 Query: 256 atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314 ||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct: 1464 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 1406
>dbj|AK120106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023K07, full insert sequence Length = 5354 Score = 188 bits (95), Expect = 7e-45 Identities = 158/179 (88%) Strand = Plus / Minus Query: 136 ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195 |||||||||||| || ||||| || ||||| |||||||| |||||||||| ||||||||| Sbjct: 4008 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 3949 Query: 196 attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255 |||||| | || || ||||||||||||||||||||||| |||||||||||| |||| || Sbjct: 3948 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 3889 Query: 256 atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314 ||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct: 3888 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 3830
>dbj|AK067542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110L13, full insert sequence Length = 4080 Score = 188 bits (95), Expect = 7e-45 Identities = 158/179 (88%) Strand = Plus / Minus Query: 136 ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195 |||||||||||| || ||||| || ||||| |||||||| |||||||||| ||||||||| Sbjct: 3975 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 3916 Query: 196 attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255 |||||| | || || ||||||||||||||||||||||| |||||||||||| |||| || Sbjct: 3915 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 3856 Query: 256 atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314 ||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct: 3855 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 3797
>ref|NM_189401.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3774 Score = 182 bits (92), Expect = 4e-43 Identities = 155/176 (88%) Strand = Plus / Minus Query: 139 tcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagcatt 198 ||||||||| || ||||| || ||||| |||||||| |||||||||| |||||||||||| Sbjct: 3774 tcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagcatt 3715 Query: 199 aactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactagata 258 ||| | || || ||||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct: 3714 aaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgagata 3655 Query: 259 gtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314 |||||| ||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct: 3654 gtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 3599
>gb|AY111552.1| Zea mays CL47233_1 mRNA sequence Length = 700 Score = 85.7 bits (43), Expect = 8e-14 Identities = 145/179 (81%) Strand = Plus / Plus Query: 136 ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195 |||||||||| | || || || ||||||||||| |||| |||||||| | |||||||| Sbjct: 296 ccatcaaggacagccaaagccaccgccaccgggcgtgaaaatctgaaggatatcaccagc 355 Query: 196 attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255 | | || || || || ||||| ||||||||||||| | | |||||||| ||||||| Sbjct: 356 actgaccgttacagtgttctttcctccaaggtaaatctttctaccatcttctctgactaa 415 Query: 256 atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314 ||||||||| |||||| |||||| | ||||| || |||||||||||||||||||||| Sbjct: 416 atagtttgcaccacgatctccatctcgtcctcctttgagtcccctgggagcatgcaccc 474
>gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, complete sequence Length = 140465 Score = 44.1 bits (22), Expect = 0.26 Identities = 28/30 (93%) Strand = Plus / Plus Query: 100 tgtgtaaatagaaaacaaggcagatgatta 129 ||||||||||||||||||| ||||| |||| Sbjct: 21547 tgtgtaaatagaaaacaagacagattatta 21576
>gb|AC133159.3| Mus musculus BAC clone RP24-503F11 from 13, complete sequence Length = 156151 Score = 44.1 bits (22), Expect = 0.26 Identities = 28/30 (93%) Strand = Plus / Plus Query: 100 tgtgtaaatagaaaacaaggcagatgatta 129 ||||||||||||||||||| ||||| |||| Sbjct: 140183 tgtgtaaatagaaaacaagacagattatta 140212
>gb|AC116696.20| Mus musculus chromosome 3, clone RP24-425N23, complete sequence Length = 168053 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 90 agctttattctgtgtaaatagaaaa 114 |||||||||||||| |||||||||| Sbjct: 70512 agctttattctgtggaaatagaaaa 70536
>emb|AL450992.17| Human DNA sequence from clone RP11-139D23 on chromosome 1 Contains two novel genes (FLJ37964), the gene for C-terminal modulator protein (CTMP), a keratin 8 (KRT8) pseudogene, the S100A10 gene for S100 calcium binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11)), the 5' end of a novel gene, a novel pseudogene and a CpG island, complete sequence Length = 185447 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 cctcaaaagcatcgataacag 59 ||||||||||||||||||||| Sbjct: 71198 cctcaaaagcatcgataacag 71178
>emb|AL356915.19| Human DNA sequence from clone RP11-179F17 on chromosome 13 Contains the 5' end of the FLT3 gene for fms-related tyrosine kinase 3, a novel gene, a eukaryotic translation elongation factor 1 alpha 1 pseudogene, a novel pseudogene and two CpG islands, complete sequence Length = 194520 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 ttattctgtgtaaatagaaaa 114 ||||||||||||||||||||| Sbjct: 188031 ttattctgtgtaaatagaaaa 188051
>gb|AC016394.13| Homo sapiens chromosome 10 clone RP11-152N13, complete sequence Length = 149726 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 tccattttcccctcccttcag 294 ||||||||||||||||||||| Sbjct: 10223 tccattttcccctcccttcag 10243
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgagctccattttcccctcc 288 |||||||||||||||||||| Sbjct: 709584 cgagctccattttcccctcc 709565
>gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, complete sequence Length = 206729 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ctccattttcccctcccttc 292 |||||||||||||||||||| Sbjct: 198107 ctccattttcccctcccttc 198126
>gb|BC079754.1| Xenopus laevis MGC84754 protein, mRNA (cDNA clone MGC:84754 IMAGE:6950186), complete cds Length = 3305 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ggtaaactctgcgaccatct 244 |||||||||||||||||||| Sbjct: 1228 ggtaaactctgcgaccatct 1247
>ref|XM_572999.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNI02650) partial mRNA Length = 1733 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgagctccattttcccctcc 288 |||||||||||||||||||| Sbjct: 1186 cgagctccattttcccctcc 1167
>ref|XM_500125.1| Yarrowia lipolytica CLIB122, YALI0A16291g predicted mRNA Length = 2436 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ccgaaaccgccgccaccggg 168 |||||||||||||||||||| Sbjct: 1211 ccgaaaccgccgccaccggg 1230
>emb|BX088708.14| Zebrafish DNA sequence from clone CH211-196B14 in linkage group 3, complete sequence Length = 193659 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ctgtgtaaatagaaaacaag 118 |||||||||||||||||||| Sbjct: 63625 ctgtgtaaatagaaaacaag 63644
>gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 106673 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ttattctgtgtaaatagaaa 113 |||||||||||||||||||| Sbjct: 51469 ttattctgtgtaaatagaaa 51450
>gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193035 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ctccattttcccctcccttc 292 |||||||||||||||||||| Sbjct: 20595 ctccattttcccctcccttc 20576
>gb|DQ302024.1| Uncultured archaeon clone 4H3_ar23 16S ribosomal RNA gene, partial sequence Length = 867 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 gcatcgataacagctgggac 66 |||||||||||||||||||| Sbjct: 770 gcatcgataacagctgggac 751
>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome Length = 4202352 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 agcaatgatcgtgatttatt 27 |||||||||||||||||||| Sbjct: 2305079 agcaatgatcgtgatttatt 2305098
>dbj|AK130924.1| Homo sapiens cDNA FLJ27414 fis, clone WMC05333 Length = 1163 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 ccattttcccctcccttcagtccc 298 ||||||||||||||||||| |||| Sbjct: 1005 ccattttcccctcccttcaatccc 982
>gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, complete sequence Length = 231792 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ctccattttcccctcccttc 292 |||||||||||||||||||| Sbjct: 142165 ctccattttcccctcccttc 142146
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ccgaaaccgccgccaccggg 168 |||||||||||||||||||| Sbjct: 1666443 ccgaaaccgccgccaccggg 1666424
>emb|AL358332.3|CNS05TE3 Human chromosome 14 DNA sequence BAC R-255G12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 161261 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 ccattttcccctcccttcagtccc 298 ||||||||||||||||||| |||| Sbjct: 69020 ccattttcccctcccttcaatccc 69043 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,788,881 Number of Sequences: 3902068 Number of extensions: 2788881 Number of successful extensions: 55253 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55177 Number of HSP's gapped (non-prelim): 75 length of query: 314 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 292 effective length of database: 17,147,199,772 effective search space: 5006982333424 effective search space used: 5006982333424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)