ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK061883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 7e-45
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 188 7e-45
3dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic D... 188 7e-45
4dbj|AK120672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 7e-45
5dbj|AK120106.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 7e-45
6dbj|AK067542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 7e-45
7ref|NM_189401.1| Oryza sativa (japonica cultivar-group), predic... 182 4e-43
8gb|AY111552.1| Zea mays CL47233_1 mRNA sequence 86 8e-14
9gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, comple... 44 0.26
10gb|AC133159.3| Mus musculus BAC clone RP24-503F11 from 13, compl... 44 0.26
11gb|AC116696.20| Mus musculus chromosome 3, clone RP24-425N23, co... 42 1.0
12emb|AL450992.17| Human DNA sequence from clone RP11-139D23 on ch... 42 1.0
13emb|AL356915.19| Human DNA sequence from clone RP11-179F17 on ch... 42 1.0
14gb|AC016394.13| Homo sapiens chromosome 10 clone RP11-152N13, co... 42 1.0
15gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.1
16gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, comp... 40 4.1
17gb|BC079754.1| Xenopus laevis MGC84754 protein, mRNA (cDNA clone... 40 4.1
18ref|XM_572999.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 4.1
19ref|XM_500125.1| Yarrowia lipolytica CLIB122, YALI0A16291g predi... 40 4.1
20emb|BX088708.14| Zebrafish DNA sequence from clone CH211-196B14 ... 40 4.1
21gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Can... 40 4.1
22gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Canc... 40 4.1
23gb|DQ302024.1| Uncultured archaeon clone 4H3_ar23 16S ribosomal ... 40 4.1
24dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 4.1
25dbj|AK130924.1| Homo sapiens cDNA FLJ27414 fis, clone WMC05333 40 4.1
26gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, co... 40 4.1
27emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 4.1
28emb|AL358332.3|CNS05TE3 Human chromosome 14 DNA sequence BAC R-2... 40 4.1

>dbj|AK061883.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F02, full
            insert sequence
          Length = 1381

 Score =  188 bits (95), Expect = 7e-45
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                        
Query: 136  ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195
            |||||||||||| || ||||| || ||||| |||||||| |||||||||| |||||||||
Sbjct: 1193 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 1134

                                                                        
Query: 196  attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
            ||||||  | || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 1133 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 1074

                                                                       
Query: 256  atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314
            ||||||||| ||||| || ||||||   |||||||||||||||||||||||||||||||
Sbjct: 1073 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 1015



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  188 bits (95), Expect = 7e-45
 Identities = 158/179 (88%)
 Strand = Plus / Plus

                                                                            
Query: 136      ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195
                |||||||||||| || ||||| || ||||| |||||||| |||||||||| |||||||||
Sbjct: 42586004 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 42586063

                                                                            
Query: 196      attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
                ||||||  | || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 42586064 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 42586123

                                                                           
Query: 256      atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314
                ||||||||| ||||| || ||||||   |||||||||||||||||||||||||||||||
Sbjct: 42586124 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 42586182



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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0458E05
          Length = 193577

 Score =  188 bits (95), Expect = 7e-45
 Identities = 158/179 (88%)
 Strand = Plus / Plus

                                                                          
Query: 136    ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195
              |||||||||||| || ||||| || ||||| |||||||| |||||||||| |||||||||
Sbjct: 106887 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 106946

                                                                          
Query: 196    attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
              ||||||  | || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 106947 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 107006

                                                                         
Query: 256    atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314
              ||||||||| ||||| || ||||||   |||||||||||||||||||||||||||||||
Sbjct: 107007 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 107065



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>dbj|AK120672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160L10, full
            insert sequence
          Length = 4082

 Score =  188 bits (95), Expect = 7e-45
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                        
Query: 136  ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195
            |||||||||||| || ||||| || ||||| |||||||| |||||||||| |||||||||
Sbjct: 1584 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 1525

                                                                        
Query: 196  attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
            ||||||  | || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 1524 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 1465

                                                                       
Query: 256  atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314
            ||||||||| ||||| || ||||||   |||||||||||||||||||||||||||||||
Sbjct: 1464 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 1406



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>dbj|AK120106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023K07, full
            insert sequence
          Length = 5354

 Score =  188 bits (95), Expect = 7e-45
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                        
Query: 136  ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195
            |||||||||||| || ||||| || ||||| |||||||| |||||||||| |||||||||
Sbjct: 4008 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 3949

                                                                        
Query: 196  attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
            ||||||  | || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 3948 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 3889

                                                                       
Query: 256  atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314
            ||||||||| ||||| || ||||||   |||||||||||||||||||||||||||||||
Sbjct: 3888 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 3830



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>dbj|AK067542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110L13, full
            insert sequence
          Length = 4080

 Score =  188 bits (95), Expect = 7e-45
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                        
Query: 136  ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195
            |||||||||||| || ||||| || ||||| |||||||| |||||||||| |||||||||
Sbjct: 3975 ccatcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagc 3916

                                                                        
Query: 196  attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
            ||||||  | || || ||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 3915 attaaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgag 3856

                                                                       
Query: 256  atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314
            ||||||||| ||||| || ||||||   |||||||||||||||||||||||||||||||
Sbjct: 3855 atagtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 3797



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>ref|NM_189401.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3774

 Score =  182 bits (92), Expect = 4e-43
 Identities = 155/176 (88%)
 Strand = Plus / Minus

                                                                        
Query: 139  tcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagcatt 198
            ||||||||| || ||||| || ||||| |||||||| |||||||||| ||||||||||||
Sbjct: 3774 tcaaggagagccaaaaccaccaccaccaggagtgagaatctgaagaatctcaccagcatt 3715

                                                                        
Query: 199  aactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactagata 258
            |||  | || || ||||||||||||||||||||||| |||||||||||| |||| |||||
Sbjct: 3714 aaccataacagtgttcttccctccaaggtaaactctacgaccatctttcttgacgagata 3655

                                                                    
Query: 259  gtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314
            |||||| ||||| || ||||||   |||||||||||||||||||||||||||||||
Sbjct: 3654 gtttgcaccacgggccccatttcttcctcccttcagtcccctgggagcatgcaccc 3599



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>gb|AY111552.1| Zea mays CL47233_1 mRNA sequence
          Length = 700

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 145/179 (81%)
 Strand = Plus / Plus

                                                                       
Query: 136 ccatcaaggagaaccgaaaccgccgccaccgggagtgaggatctgaagaacctcaccagc 195
           |||||||||| | || || || ||||||||||| ||||  |||||||| |  ||||||||
Sbjct: 296 ccatcaaggacagccaaagccaccgccaccgggcgtgaaaatctgaaggatatcaccagc 355

                                                                       
Query: 196 attaactgtgacggtattcttccctccaaggtaaactctgcgaccatctttcctgactag 255
           | | || || || || ||||| |||||||||||||   | | ||||||||  ||||||| 
Sbjct: 356 actgaccgttacagtgttctttcctccaaggtaaatctttctaccatcttctctgactaa 415

                                                                      
Query: 256 atagtttgcgccacgagctccattttcccctcccttcagtcccctgggagcatgcaccc 314
           ||||||||| |||||| |||||| |   ||||| || ||||||||||||||||||||||
Sbjct: 416 atagtttgcaccacgatctccatctcgtcctcctttgagtcccctgggagcatgcaccc 474



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>gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, complete sequence
          Length = 140465

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 100   tgtgtaaatagaaaacaaggcagatgatta 129
             ||||||||||||||||||| ||||| ||||
Sbjct: 21547 tgtgtaaatagaaaacaagacagattatta 21576



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>gb|AC133159.3| Mus musculus BAC clone RP24-503F11 from 13, complete sequence
          Length = 156151

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 100    tgtgtaaatagaaaacaaggcagatgatta 129
              ||||||||||||||||||| ||||| ||||
Sbjct: 140183 tgtgtaaatagaaaacaagacagattatta 140212



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>gb|AC116696.20| Mus musculus chromosome 3, clone RP24-425N23, complete sequence
          Length = 168053

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 90    agctttattctgtgtaaatagaaaa 114
             |||||||||||||| ||||||||||
Sbjct: 70512 agctttattctgtggaaatagaaaa 70536



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>emb|AL450992.17| Human DNA sequence from clone RP11-139D23 on chromosome 1 Contains two
             novel genes (FLJ37964), the gene for C-terminal modulator
             protein (CTMP), a keratin 8 (KRT8) pseudogene, the S100A10
             gene for S100 calcium binding protein A10 (annexin II
             ligand, calpactin I, light polypeptide (p11)), the 5' end
             of a novel gene, a novel pseudogene and a CpG island,
             complete sequence
          Length = 185447

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    cctcaaaagcatcgataacag 59
             |||||||||||||||||||||
Sbjct: 71198 cctcaaaagcatcgataacag 71178



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>emb|AL356915.19| Human DNA sequence from clone RP11-179F17 on chromosome 13 Contains the
              5' end of the FLT3 gene for fms-related tyrosine kinase 3,
              a novel gene, a eukaryotic translation elongation factor 1
              alpha 1 pseudogene, a novel pseudogene and two CpG islands,
              complete sequence
          Length = 194520

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     ttattctgtgtaaatagaaaa 114
              |||||||||||||||||||||
Sbjct: 188031 ttattctgtgtaaatagaaaa 188051



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>gb|AC016394.13| Homo sapiens chromosome 10 clone RP11-152N13, complete sequence
          Length = 149726

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 274   tccattttcccctcccttcag 294
             |||||||||||||||||||||
Sbjct: 10223 tccattttcccctcccttcag 10243



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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
              sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    cgagctccattttcccctcc 288
              ||||||||||||||||||||
Sbjct: 709584 cgagctccattttcccctcc 709565



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>gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, complete sequence
          Length = 206729

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    ctccattttcccctcccttc 292
              ||||||||||||||||||||
Sbjct: 198107 ctccattttcccctcccttc 198126



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>gb|BC079754.1| Xenopus laevis MGC84754 protein, mRNA (cDNA clone MGC:84754
            IMAGE:6950186), complete cds
          Length = 3305

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  ggtaaactctgcgaccatct 244
            ||||||||||||||||||||
Sbjct: 1228 ggtaaactctgcgaccatct 1247



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>ref|XM_572999.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNI02650) partial mRNA
          Length = 1733

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  cgagctccattttcccctcc 288
            ||||||||||||||||||||
Sbjct: 1186 cgagctccattttcccctcc 1167



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>ref|XM_500125.1| Yarrowia lipolytica CLIB122, YALI0A16291g predicted mRNA
          Length = 2436

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  ccgaaaccgccgccaccggg 168
            ||||||||||||||||||||
Sbjct: 1211 ccgaaaccgccgccaccggg 1230



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>emb|BX088708.14| Zebrafish DNA sequence from clone CH211-196B14 in linkage group 3,
             complete sequence
          Length = 193659

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ctgtgtaaatagaaaacaag 118
             ||||||||||||||||||||
Sbjct: 63625 ctgtgtaaatagaaaacaag 63644



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>gb|AC122685.9| Homo sapiens 12 BAC RP11-165I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 106673

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    ttattctgtgtaaatagaaa 113
             ||||||||||||||||||||
Sbjct: 51469 ttattctgtgtaaatagaaa 51450



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>gb|AC008180.15| Homo sapiens 3 BAC RP11-292L5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 193035

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   ctccattttcccctcccttc 292
             ||||||||||||||||||||
Sbjct: 20595 ctccattttcccctcccttc 20576



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>gb|DQ302024.1| Uncultured archaeon clone 4H3_ar23 16S ribosomal RNA gene, partial
           sequence
          Length = 867

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  gcatcgataacagctgggac 66
           ||||||||||||||||||||
Sbjct: 770 gcatcgataacagctgggac 751



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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       agcaatgatcgtgatttatt 27
               ||||||||||||||||||||
Sbjct: 2305079 agcaatgatcgtgatttatt 2305098



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>dbj|AK130924.1| Homo sapiens cDNA FLJ27414 fis, clone WMC05333
          Length = 1163

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 275  ccattttcccctcccttcagtccc 298
            ||||||||||||||||||| ||||
Sbjct: 1005 ccattttcccctcccttcaatccc 982



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>gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, complete sequence
          Length = 231792

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    ctccattttcccctcccttc 292
              ||||||||||||||||||||
Sbjct: 142165 ctccattttcccctcccttc 142146



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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     ccgaaaccgccgccaccggg 168
               ||||||||||||||||||||
Sbjct: 1666443 ccgaaaccgccgccaccggg 1666424



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>emb|AL358332.3|CNS05TE3 Human chromosome 14 DNA sequence BAC R-255G12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 161261

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   ccattttcccctcccttcagtccc 298
             ||||||||||||||||||| ||||
Sbjct: 69020 ccattttcccctcccttcaatccc 69043


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,788,881
Number of Sequences: 3902068
Number of extensions: 2788881
Number of successful extensions: 55253
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55177
Number of HSP's gapped (non-prelim): 75
length of query: 314
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 292
effective length of database: 17,147,199,772
effective search space: 5006982333424
effective search space used: 5006982333424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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