>gb|AC111134.10| Mus musculus chromosome 3, clone RP23-349J3, complete sequence
          Length = 223171

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 182    acacacatctacaatctgcaagactg 207
              |||||||| |||||||||||||||||
Sbjct: 167555 acacacatatacaatctgcaagactg 167580

>gb|AC128270.3| Rattus norvegicus 12 BAC CH230-48A22 (Children's Hospital Oakland
              Research Institute Rat (BN/SsNHsd/MCW) BAC library)
              complete sequence
          Length = 236843

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 133    acacacacatctacagaggccg 154
              ||||||||||||||||||||||
Sbjct: 141552 acacacacatctacagaggccg 141531

>emb|AL121724.19|HSDJ29P5 Human DNA sequence from clone RP1-29P5 on chromosome 6q16.1-16.2,
             complete sequence
          Length = 113644

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 49    cagtaaggtacagaaaggcaaa 70
             ||||||||||||||||||||||
Sbjct: 90118 cagtaaggtacagaaaggcaaa 90139

>gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome 12, complete sequence
          Length = 134517

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 119   tctttacttcttatacacacac 140
             ||||||||||||||||||||||
Sbjct: 38662 tctttacttcttatacacacac 38641

>gb|AC114608.5| Mus musculus chromosome 8, clone RP23-418L5, complete sequence
          Length = 190200

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 92    catggatggaactataccagc 112
             |||||||||||||||||||||
Sbjct: 59599 catggatggaactataccagc 59579

>gb|AC018555.5| Homo sapiens chromosome 16 clone RP11-486F10, complete sequence
          Length = 187844

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 10     aaatcttcattcatttggggctttc 34
              |||||||||||| ||||||||||||
Sbjct: 159104 aaatcttcattcctttggggctttc 159128

>gb|AC093896.3| Homo sapiens BAC clone RP11-719N9 from 4, complete sequence
          Length = 156177

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 54    aggtacagaaaggcaaacttt 74
             |||||||||||||||||||||
Sbjct: 97073 aggtacagaaaggcaaacttt 97053

>emb|AL807761.8| Human DNA sequence from clone RP11-196I18 on chromosome 9 Contains the
             5' end of a novel gene (FLJ40387), a novel pseudogene, a
             MMRP19 pseudogene and a novel gene, complete sequence
          Length = 103861

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   ctgtctttctttacttcttataca 135
             |||||||||||||||||| |||||
Sbjct: 56700 ctgtctttctttacttctcataca 56677

>emb|AL671970.9| Mouse DNA sequence from clone RP23-152A20 on chromosome 4, complete
              sequence
          Length = 166569

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     tgccactgaaggcaggcatg 95
              ||||||||||||||||||||
Sbjct: 152003 tgccactgaaggcaggcatg 152022

>emb|AL844607.4| Mouse DNA sequence from clone RP24-280G18 on chromosome 4, complete
             sequence
          Length = 160298

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   tatacacacacatctacaga 149
             ||||||||||||||||||||
Sbjct: 30489 tatacacacacatctacaga 30470

>gb|AF509764.1| Hordeum vulgare subsp. vulgare Gobernadora Rpg1 pseudogene, complete
            sequence
          Length = 4833

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 146  cagaggccggggcgtcgcctccttttct 173
            ||||||||||||||  ||||||||||||
Sbjct: 4580 cagaggccggggcgaggcctccttttct 4607

>gb|AF509763.1| Hordeum vulgare subsp. vulgare Dictoo Rpg1 pseudogene, complete
           sequence
          Length = 4837

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 146 cagaggccggggcgtcgcctccttttct 173
           ||||||||||||||  ||||||||||||
Sbjct: 254 cagaggccggggcgaggcctccttttct 227

>gb|AF509762.1| Hordeum vulgare subsp. vulgare Sm89010 Rpg1 pseudogene, complete
            sequence
          Length = 4836

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 146  cagaggccggggcgtcgcctccttttct 173
            ||||||||||||||  ||||||||||||
Sbjct: 4591 cagaggccggggcgaggcctccttttct 4618

>emb|BX649289.11| Zebrafish DNA sequence from clone DKEY-231H5 in linkage group 20,
             complete sequence
          Length = 124708

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     agtaaaatcttcattcattt 25
             ||||||||||||||||||||
Sbjct: 66044 agtaaaatcttcattcattt 66025

>gb|AF289210.1|H010058S06 Mus musculus aspartyl beta-hydroxylase (ASPH) gene, exons 16 and 17
          Length = 5161

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   tgccactgaaggcaggcatg 95
            ||||||||||||||||||||
Sbjct: 2553 tgccactgaaggcaggcatg 2534

>emb|AL845272.2| Mouse DNA sequence from clone RP23-169D18 on chromosome X, complete
             sequence
          Length = 117773

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   acacatctacaatctgcaagactg 207
             ||||||||||||| ||||||||||
Sbjct: 99451 acacatctacaatttgcaagactg 99428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,183,989
Number of Sequences: 3902068
Number of extensions: 3183989
Number of successful extensions: 62517
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62487
Number of HSP's gapped (non-prelim): 30
length of query: 252
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 230
effective length of database: 17,147,199,772
effective search space: 3943855947560
effective search space used: 3943855947560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)