ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RFA1_CHICK (Q5ZJJ2) Replication protein A 70 kDa DNA-binding sub... 30 1.4
2PUR2_RHIME (Q92RL0) Phosphoribosylamine--glycine ligase (EC 6.3.... 28 4.2

>RFA1_CHICK (Q5ZJJ2) Replication protein A 70 kDa DNA-binding subunit (RP-A)|
           (RF-A) (Replication factor-A protein 1) (p70)
          Length = 614

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +3

Query: 6   AGDAMPVINAPQNALNRQGIPRHTKT*GERNITCEDITK*NDYDSFW 146
           AG A P  +AP N  ++   P   KT G        I   N Y S W
Sbjct: 148 AGSAAPKYHAPSNQFSKASAPSSVKTPGGTQSKVVPIASLNPYQSKW 194



to top

>PUR2_RHIME (Q92RL0) Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS)|
           (Glycinamide ribonucleotide synthetase)
           (Phosphoribosylglycinamide synthetase)
          Length = 423

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
 Frame = +1

Query: 124 KMTMIRFGAREYSLVQHISSTP*-TRRWEAKGKG------------REPLAQAISFCTFH 264
           K+ +I  G RE++L   I+ +P  T+ + A G               E     + FC  H
Sbjct: 2   KVLLIGSGGREHALAWKIAQSPRLTKLYAAPGNPGIAEEAAIVDLHTENHEDVVDFCRTH 61

Query: 265 AVPFLIEGP 291
           A+ F++ GP
Sbjct: 62  AIDFVVVGP 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,843,824
Number of Sequences: 219361
Number of extensions: 1097615
Number of successful extensions: 2212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2210
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top