ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL670951.6| Mouse DNA sequence from clone RP23-6N18 on chrom... 44 0.15
2gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.61
3emb|BX537106.6| Zebrafish DNA sequence from clone DKEY-98P3 in l... 42 0.61
4gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, com... 42 0.61
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.61
6emb|BX005104.7| Zebrafish DNA sequence from clone DKEY-191D13 in... 42 0.61
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.61
8emb|AL928701.7| Zebrafish DNA sequence from clone CH211-201H21, ... 42 0.61
9emb|AL808141.8| Zebrafish DNA sequence from clone CH211-260N19, ... 42 0.61
10gb|AC167132.12| Mus musculus chromosome 8, clone RP24-335A22, co... 42 0.61
11gb|AC116798.11| Mus musculus chromosome 1, clone RP24-329K22, co... 40 2.4
12gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosom... 40 2.4
13gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosom... 40 2.4
14gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosom... 40 2.4
15gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, compl... 40 2.4
16ref|XM_975010.1| PREDICTED: Mus musculus hypothetical protein LO... 40 2.4
17ref|XM_974871.1| PREDICTED: Mus musculus hypothetical protein LO... 40 2.4
18ref|XM_973576.1| PREDICTED: Mus musculus hypothetical protein LO... 40 2.4
19emb|CT025601.7| Mouse DNA sequence from clone RP23-424B7 on chro... 40 2.4
20gb|AC116470.12| Mus musculus chromosome 16, clone RP23-383N18, c... 40 2.4
21gb|AC138619.4| Mus musculus BAC clone RP23-278M16 from chromosom... 40 2.4
22gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, co... 40 2.4
23emb|AL390035.10| Human DNA sequence from clone RP13-9D14 on chro... 40 2.4
24gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, com... 40 2.4
25dbj|AK148940.1| Mus musculus 2 days neonate sympathetic ganglion... 40 2.4
26emb|AL732612.28| Mouse DNA sequence from clone RP23-31L20 on chr... 40 2.4
27emb|AL845360.10| Mouse DNA sequence from clone RP23-421L7 on chr... 40 2.4
28dbj|AP000412.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 2.4
29emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chr... 40 2.4
30gb|AC117721.8| Mus musculus chromosome 1, clone RP24-196D2, comp... 38 9.5
31gb|AY498860.1| Homo sapiens tumor necrosis factor receptor super... 38 9.5
32gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosom... 38 9.5
33gb|AC124760.4| Mus musculus BAC clone RP23-133I8 from chromosome... 38 9.5
34gb|AC073574.11| Homo sapiens 12 BAC RP11-393J8 (Roswell Park Can... 38 9.5
35gb|AC091754.4| Papio anubis clone RP41-384C24, complete sequence 38 9.5
36gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence 38 9.5
37gb|AC122874.2| Mus musculus BAC clone RP23-111G16 from 6, comple... 38 9.5
38gb|AC113316.14| Mus musculus chromosome 5, clone RP23-441I24, co... 38 9.5
39gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complet... 38 9.5
40gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, com... 38 9.5
41gb|AC118224.8| Mus musculus chromosome 10, clone RP23-341N20, co... 38 9.5
42emb|AL359977.16| Human DNA sequence from clone RP11-116M11 on ch... 38 9.5
43emb|AL357835.11| Human DNA sequence from clone RP11-426M1 on chr... 38 9.5
44gb|AC158960.4| Mus musculus chromosome 1, clone RP23-315O2, comp... 38 9.5
45emb|AL079342.17|HSDJ72A23 Human DNA sequence from clone RP1-72A2... 38 9.5
46gb|AC105336.14| Mus musculus chromosome 3, clone RP24-277J22, co... 38 9.5
47emb|AL645582.22| Mouse DNA sequence from clone RP23-302J15 on ch... 38 9.5
48emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chr... 38 9.5
49emb|BX682542.5| Mouse DNA sequence from clone RP23-125N5 on chro... 38 9.5
50gb|AC154125.7| Mus musculus chromosome 18, clone RP23-121M18, co... 38 9.5
51gb|AC091682.26| Mus musculus strain C57BL/6J chromosome 3 clone ... 38 9.5
52gb|AC115836.5| Homo sapiens chromosome 8, clone RP11-1069E10, co... 38 9.5
53gb|AC093599.6| Homo sapiens BAC clone RP11-285C1 from 4, complet... 38 9.5
54gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complet... 38 9.5
55dbj|AK012318.1| Mus musculus 11 days embryo whole body cDNA, RIK... 38 9.5
56gb|AC148665.1| Macaca mulatta Major Histocompatibility Complex B... 38 9.5
57gb|AC019215.4|AC019215 Homo sapiens BAC clone RP11-480M18 from 8... 38 9.5
58dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partia... 38 9.5
59emb|AL831764.16| Mouse DNA sequence from clone RP23-203A3 on chr... 38 9.5
60emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete s... 38 9.5
61gb|AC115822.9| Mus musculus chromosome 18, clone RP23-406D17, co... 38 9.5
62gb|AC105906.21| Mus musculus chromosome 7, clone RP24-81O24, com... 38 9.5
63emb|AL844894.14| Zebrafish DNA sequence from clone DKEY-44K1, co... 38 9.5
64dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 9.5
65dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone... 38 9.5
66dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone... 38 9.5
67gb|L36575.1|PIGSLADRBH Sus scrofa MHC class II SLA-DRB2-1 mRNA, ... 38 9.5
68gb|L36577.1|PIGSLADRBJ Sus scrofa MHC class II SLA-DRB2-2B mRNA,... 38 9.5
69gb|L36576.1|PIGSLADRBI Sus scrofa MHC class II SLA-DRB2-2A mRNA,... 38 9.5
70emb|Z26643.1|SSGRIS22 S.scrofa MHC class II SLA-DR-beta 1 gene, ... 38 9.5
71gb|AC148985.4| Mus musculus BAC clone RP23-124O21 from chromosom... 38 9.5
72dbj|D87431.1| Porcine leukocyte DNA for MHC class II histocompat... 38 9.5 
>emb|AL670951.6| Mouse DNA sequence from clone RP23-6N18 on chromosome 2, complete
             sequence
          Length = 207571

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 83    accagaagcttccttcttccat 104
             ||||||||||||||||||||||
Sbjct: 18688 accagaagcttccttcttccat 18667
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>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0011J22 map R10571S, complete sequence
          Length = 154441

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    ccacaaaataacattcagagt 61
             |||||||||||||||||||||
Sbjct: 85791 ccacaaaataacattcagagt 85811
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>emb|BX537106.6| Zebrafish DNA sequence from clone DKEY-98P3 in linkage group 20 Contains
              the gene for a novel protein similar to vertebrate
              dermatopontin (DPT), the atp1b1a gene for ATPase, Na+/K+
              transporting, beta 1a polypeptide, the gene for a novel
              protein containing a homocysteine S-methyltransferase
              domain, the bivm gene for basic, immunoglobulin-like
              variable motif containing, the 5' end of the gene for a
              novel zinc finger protein (wu:fc06h02), the ndpkz4 gene for
              nucleoside diphosphate kinase-Z4 and the gene for a novel
              protein containing an inosine-uridine preferring nucleoside
              hydrolase doamin, complete sequence
          Length = 162005

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 34     atgcatcccacaaaataacat 54
              |||||||||||||||||||||
Sbjct: 115020 atgcatcccacaaaataacat 115040
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>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence
          Length = 198967

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    cagaagcttccttcttccatt 105
             |||||||||||||||||||||
Sbjct: 19215 cagaagcttccttcttccatt 19235
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 41      ccacaaaataacattcagagt 61
               |||||||||||||||||||||
Sbjct: 3229194 ccacaaaataacattcagagt 3229174
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>emb|BX005104.7| Zebrafish DNA sequence from clone DKEY-191D13 in linkage group 6,
              complete sequence
          Length = 152217

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 34     atgcatcccacaaaataacat 54
              |||||||||||||||||||||
Sbjct: 144255 atgcatcccacaaaataacat 144275
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 41      ccacaaaataacattcagagt 61
               |||||||||||||||||||||
Sbjct: 3237899 ccacaaaataacattcagagt 3237879
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>emb|AL928701.7| Zebrafish DNA sequence from clone CH211-201H21, complete sequence
          Length = 188745

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    atgcatcccacaaaataacat 54
             |||||||||||||||||||||
Sbjct: 25972 atgcatcccacaaaataacat 25992
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>emb|AL808141.8| Zebrafish DNA sequence from clone CH211-260N19, complete sequence
          Length = 147111

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    atgcatcccacaaaataacat 54
             |||||||||||||||||||||
Sbjct: 17594 atgcatcccacaaaataacat 17614
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>gb|AC167132.12| Mus musculus chromosome 8, clone RP24-335A22, complete sequence
          Length = 203284

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    cagaagcttccttcttccatt 105
             |||||||||||||||||||||
Sbjct: 46662 cagaagcttccttcttccatt 46642
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>gb|AC116798.11| Mus musculus chromosome 1, clone RP24-329K22, complete sequence
          Length = 173479

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   cagaagcttccttcttccat 104
            ||||||||||||||||||||
Sbjct: 3481 cagaagcttccttcttccat 3462
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>gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosome 18, complete
             sequence
          Length = 136832

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagaagcttccttcttccat 104
             ||||||||||||||||||||
Sbjct: 62510 cagaagcttccttcttccat 62529
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>gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosome 1, complete sequence
          Length = 209820

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     cagaagcttccttcttccat 104
              ||||||||||||||||||||
Sbjct: 154326 cagaagcttccttcttccat 154307
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>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete sequence
          Length = 193184

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     cagaagcttccttcttccat 104
              ||||||||||||||||||||
Sbjct: 167982 cagaagcttccttcttccat 168001
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>gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, complete sequence
          Length = 250903

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     cagaagcttccttcttccat 104
              ||||||||||||||||||||
Sbjct: 109193 cagaagcttccttcttccat 109174
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>ref|XM_975010.1| PREDICTED: Mus musculus hypothetical protein LOC669245 (LOC669245),
           mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  cagaagcttccttcttccat 104
           ||||||||||||||||||||
Sbjct: 136 cagaagcttccttcttccat 117
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>ref|XM_974871.1| PREDICTED: Mus musculus hypothetical protein LOC664925 (LOC664925),
           mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  cagaagcttccttcttccat 104
           ||||||||||||||||||||
Sbjct: 136 cagaagcttccttcttccat 117
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>ref|XM_973576.1| PREDICTED: Mus musculus hypothetical protein LOC674284 (LOC674284),
           mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  cagaagcttccttcttccat 104
           ||||||||||||||||||||
Sbjct: 136 cagaagcttccttcttccat 117
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>emb|CT025601.7| Mouse DNA sequence from clone RP23-424B7 on chromosome 17, complete
             sequence
          Length = 197841

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    cagaagcttccttcttccat 104
             ||||||||||||||||||||
Sbjct: 85983 cagaagcttccttcttccat 85964
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>gb|AC116470.12| Mus musculus chromosome 16, clone RP23-383N18, complete sequence
          Length = 194593

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     cagaagcttccttcttccat 104
              ||||||||||||||||||||
Sbjct: 188090 cagaagcttccttcttccat 188109
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>gb|AC138619.4| Mus musculus BAC clone RP23-278M16 from chromosome 18, complete
             sequence
          Length = 170250

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagaagcttccttcttccat 104
             ||||||||||||||||||||
Sbjct: 17379 cagaagcttccttcttccat 17398
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>gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, complete sequence
          Length = 235574

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagaagcttccttcttccat 104
             ||||||||||||||||||||
Sbjct: 55849 cagaagcttccttcttccat 55868
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>emb|AL390035.10| Human DNA sequence from clone RP13-9D14 on chromosome X Contains the 5'
              end of gene KIAA2022 and a CpG island, complete sequence
          Length = 148057

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     caaaatgcaaccagaagctt 93
              ||||||||||||||||||||
Sbjct: 108064 caaaatgcaaccagaagctt 108083
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>gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, complete sequence
          Length = 116762

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   attcttgtgtcatttcttca 122
             ||||||||||||||||||||
Sbjct: 60550 attcttgtgtcatttcttca 60569
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>dbj|AK148940.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120465J07
            product:unclassifiable, full insert sequence
          Length = 2064

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   cagaagcttccttcttccat 104
            ||||||||||||||||||||
Sbjct: 1929 cagaagcttccttcttccat 1948
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>emb|AL732612.28| Mouse DNA sequence from clone RP23-31L20 on chromosome 11, complete
             sequence
          Length = 145244

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    cagaagcttccttcttccat 104
             ||||||||||||||||||||
Sbjct: 14659 cagaagcttccttcttccat 14640
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>emb|AL845360.10| Mouse DNA sequence from clone RP23-421L7 on chromosome 2, complete
              sequence
          Length = 196651

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     cagaagcttccttcttccat 104
              ||||||||||||||||||||
Sbjct: 113584 cagaagcttccttcttccat 113603
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>dbj|AP000412.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K3G3
          Length = 24057

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   aaccagaagcttccttcttc 101
            ||||||||||||||||||||
Sbjct: 2599 aaccagaagcttccttcttc 2618
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>emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chromosome 4, complete
             sequence
          Length = 164883

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagaagcttccttcttccat 104
             ||||||||||||||||||||
Sbjct: 80777 cagaagcttccttcttccat 80796
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>gb|AC117721.8| Mus musculus chromosome 1, clone RP24-196D2, complete sequence
          Length = 170426

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 86     agaagcttccttcttccat 104
              |||||||||||||||||||
Sbjct: 121199 agaagcttccttcttccat 121181
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>gb|AY498860.1| Homo sapiens tumor necrosis factor receptor superfamily, member 8
             (TNFRSF8) gene, complete cds
          Length = 84102

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 76    aaatgcaaccagaagcttccttc 98
             |||||||||||||||| ||||||
Sbjct: 56712 aaatgcaaccagaagcctccttc 56690
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>gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosome 7, complete sequence
          Length = 204278

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 87     gaagcttccttcttccatt 105
              |||||||||||||||||||
Sbjct: 189808 gaagcttccttcttccatt 189790
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>gb|AC124760.4| Mus musculus BAC clone RP23-133I8 from chromosome 1, complete sequence
          Length = 230067

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 85     cagaagcttccttcttcca 103
              |||||||||||||||||||
Sbjct: 154480 cagaagcttccttcttcca 154462
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>gb|AC073574.11| Homo sapiens 12 BAC RP11-393J8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181287

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    cacaaaataacattcagag 60
             |||||||||||||||||||
Sbjct: 75106 cacaaaataacattcagag 75088
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>gb|AC091754.4| Papio anubis clone RP41-384C24, complete sequence
          Length = 192273

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    ttcttgtgtcatttcttca 122
              |||||||||||||||||||
Sbjct: 172678 ttcttgtgtcatttcttca 172660
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>gb|AC091001.3| Papio anubis clone RP41-36M16, complete sequence
          Length = 177066

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 104  ttcttgtgtcatttcttca 122
            |||||||||||||||||||
Sbjct: 2516 ttcttgtgtcatttcttca 2498
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>gb|AC122874.2| Mus musculus BAC clone RP23-111G16 from 6, complete sequence
          Length = 204198

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     ccacaactagtcctggaca 26
             |||||||||||||||||||
Sbjct: 71535 ccacaactagtcctggaca 71517
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>gb|AC113316.14| Mus musculus chromosome 5, clone RP23-441I24, complete sequence
          Length = 247892

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 82     aaccagaagcttccttcttccat 104
              ||||| |||||||||||||||||
Sbjct: 179074 aaccaaaagcttccttcttccat 179096
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>gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complete sequence
          Length = 203829

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     aactagtcctggacaacat 30
              |||||||||||||||||||
Sbjct: 111691 aactagtcctggacaacat 111673
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>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence
          Length = 213683

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 82    aaccagaagcttccttcttccat 104
             ||||| |||||||||||||||||
Sbjct: 58061 aaccaaaagcttccttcttccat 58039
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>gb|AC118224.8| Mus musculus chromosome 10, clone RP23-341N20, complete sequence
          Length = 205533

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 87    gaagcttccttcttccatt 105
             |||||||||||||||||||
Sbjct: 74743 gaagcttccttcttccatt 74725
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>emb|AL359977.16| Human DNA sequence from clone RP11-116M11 on chromosome 1 Contains the
             5' end of the FAF1 gene for Fas (TNFRSF6) associated
             factor 1, the 5' end of the CDKN2C gene for
             cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
             and a CpG island, complete sequence
          Length = 75013

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 84    ccagaagcttccttcttccattc 106
             |||||||| ||||||||||||||
Sbjct: 30598 ccagaagcctccttcttccattc 30576
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>emb|AL357835.11| Human DNA sequence from clone RP11-426M1 on chromosome 1 Contains the
             TNFRSF8 gene for tumor necrosis factor receptor
             superfamily member 8, a ribosomal protein L23a (RPL23A)
             pseudogene, the 5' end of the TNFRSF1B gene for tumor
             necrosis factor receptor superfamily member 1B and three
             CpG islands, complete sequence
          Length = 151498

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 76    aaatgcaaccagaagcttccttc 98
             |||||||||||||||| ||||||
Sbjct: 72331 aaatgcaaccagaagcctccttc 72309
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>gb|AC158960.4| Mus musculus chromosome 1, clone RP23-315O2, complete sequence
          Length = 176947

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     agaagcttccttcttccat 104
              |||||||||||||||||||
Sbjct: 110385 agaagcttccttcttccat 110403
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>emb|AL079342.17|HSDJ72A23 Human DNA sequence from clone RP1-72A23 on chromosome 6 Contains an
             adaptor-related (clathrin-associated) protein complex 4,
             sigma 1 subunit (AP4A1) pseudogene, a novel pseudogene,
             the 5' end of the RNGTT gene for RNA guanylyltransferase
             and 5'-phosphatase (mRNA capping enzyme, CAP1A) and two
             CpG islands, complete sequence
          Length = 150541

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 158   aaatgcttctgtcaattgtaaag 180
             |||||||||||| ||||||||||
Sbjct: 87113 aaatgcttctgtaaattgtaaag 87135
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>gb|AC105336.14| Mus musculus chromosome 3, clone RP24-277J22, complete sequence
          Length = 176399

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 82    aaccagaagcttccttcttccat 104
             ||||| |||||||||||||||||
Sbjct: 60284 aaccaaaagcttccttcttccat 60306
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>emb|AL645582.22| Mouse DNA sequence from clone RP23-302J15 on chromosome 11 Contains
            two CpG islands, complete sequence
          Length = 135978

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 85   cagaagcttccttcttcca 103
            |||||||||||||||||||
Sbjct: 6681 cagaagcttccttcttcca 6663
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>emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chromosome 11 no genes,
              complete sequence
          Length = 216199

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 74     caaaatgcaaccagaagct 92
              |||||||||||||||||||
Sbjct: 184721 caaaatgcaaccagaagct 184739
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>emb|BX682542.5| Mouse DNA sequence from clone RP23-125N5 on chromosome 4, complete
             sequence
          Length = 144906

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 91    cttccttcttccattcttgtgtc 113
             |||||||||||| ||||||||||
Sbjct: 85050 cttccttcttcctttcttgtgtc 85028
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>gb|AC154125.7| Mus musculus chromosome 18, clone RP23-121M18, complete sequence
          Length = 207258

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 82     aaccagaagcttccttcttccat 104
              ||||| |||||||||||||||||
Sbjct: 199296 aaccaaaagcttccttcttccat 199274
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>gb|AC091682.26| Mus musculus strain C57BL/6J chromosome 3 clone rp23-135c10, complete
             sequence
          Length = 206957

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 85    cagaagcttccttcttcca 103
             |||||||||||||||||||
Sbjct: 49579 cagaagcttccttcttcca 49561
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>gb|AC115836.5| Homo sapiens chromosome 8, clone RP11-1069E10, complete sequence
          Length = 107374

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   tcatttcttcactggacag 130
             |||||||||||||||||||
Sbjct: 95674 tcatttcttcactggacag 95656
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>gb|AC093599.6| Homo sapiens BAC clone RP11-285C1 from 4, complete sequence
          Length = 187937

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    caaaataacattcagagtt 62
             |||||||||||||||||||
Sbjct: 55927 caaaataacattcagagtt 55909
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>gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complete sequence
          Length = 187332

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 35     tgcatcccacaaaataacattca 57
              |||||| ||||||||||||||||
Sbjct: 107379 tgcatcacacaaaataacattca 107401
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>dbj|AK012318.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2700033H19
           product:unclassifiable, full insert sequence
          Length = 776

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 85  cagaagcttccttcttcca 103
           |||||||||||||||||||
Sbjct: 300 cagaagcttccttcttcca 282
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>gb|AC148665.1| Macaca mulatta Major Histocompatibility Complex BAC MMU023M02, complete
             sequence
          Length = 182939

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 114   atttcttcactggacagcaacct 136
             |||||||||||||||| ||||||
Sbjct: 64867 atttcttcactggacaccaacct 64889
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>gb|AC019215.4|AC019215 Homo sapiens BAC clone RP11-480M18 from 8, complete sequence
          Length = 192579

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 90    gcttccttcttccattctt 108
             |||||||||||||||||||
Sbjct: 89736 gcttccttcttccattctt 89718
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>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 114    atttcttcactggacagcaacct 136
              |||||||||||||||| ||||||
Sbjct: 616889 atttcttcactggacaccaacct 616867
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>emb|AL831764.16| Mouse DNA sequence from clone RP23-203A3 on chromosome 2, complete
              sequence
          Length = 195821

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 88     aagcttccttcttccattc 106
              |||||||||||||||||||
Sbjct: 159303 aagcttccttcttccattc 159285
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>emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete sequence
          Length = 165790

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 109   gtgtcatttcttcactgga 127
             |||||||||||||||||||
Sbjct: 91304 gtgtcatttcttcactgga 91322
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>gb|AC115822.9| Mus musculus chromosome 18, clone RP23-406D17, complete sequence
          Length = 160731

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    acaaaataacattcagagt 61
             |||||||||||||||||||
Sbjct: 84652 acaaaataacattcagagt 84670
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>gb|AC105906.21| Mus musculus chromosome 7, clone RP24-81O24, complete sequence
          Length = 213004

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 86     agaagcttccttcttccat 104
              |||||||||||||||||||
Sbjct: 117579 agaagcttccttcttccat 117561
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>emb|AL844894.14| Zebrafish DNA sequence from clone DKEY-44K1, complete sequence
          Length = 220237

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 161    tgcttctgtcaattgtaaa 179
              |||||||||||||||||||
Sbjct: 164269 tgcttctgtcaattgtaaa 164287
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>dbj|AP005014.3| Homo sapiens genomic DNA, chromosome 11 clone:RP13-259F12, complete
             sequence
          Length = 167444

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   cttgtgtcatttcttcact 124
             |||||||||||||||||||
Sbjct: 62562 cttgtgtcatttcttcact 62544
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>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557
          Length = 87695

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 39   tcccacaaaataacattca 57
            |||||||||||||||||||
Sbjct: 1953 tcccacaaaataacattca 1971
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>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541,
             complete sequence
          Length = 110985

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    tcccacaaaataacattca 57
             |||||||||||||||||||
Sbjct: 89556 tcccacaaaataacattca 89574
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>gb|L36575.1|PIGSLADRBH Sus scrofa MHC class II SLA-DRB2-1 mRNA, exon 2
          Length = 250

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 109 gtgtcatttcttcactgga 127
           |||||||||||||||||||
Sbjct: 29  gtgtcatttcttcactgga 47
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>gb|L36577.1|PIGSLADRBJ Sus scrofa MHC class II SLA-DRB2-2B mRNA, exon 2
          Length = 250

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 109 gtgtcatttcttcactgga 127
           |||||||||||||||||||
Sbjct: 29  gtgtcatttcttcactgga 47
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>gb|L36576.1|PIGSLADRBI Sus scrofa MHC class II SLA-DRB2-2A mRNA, exon 2
          Length = 250

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 109 gtgtcatttcttcactgga 127
           |||||||||||||||||||
Sbjct: 29  gtgtcatttcttcactgga 47
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>emb|Z26643.1|SSGRIS22 S.scrofa MHC class II SLA-DR-beta 1 gene, exon 2 (pseudogene)
          Length = 248

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 109 gtgtcatttcttcactgga 127
           |||||||||||||||||||
Sbjct: 27  gtgtcatttcttcactgga 45
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>gb|AC148985.4| Mus musculus BAC clone RP23-124O21 from chromosome 7, complete sequence
          Length = 190473

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    agaagcttccttcttccat 104
             |||||||||||||||||||
Sbjct: 47849 agaagcttccttcttccat 47867
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>dbj|D87431.1| Porcine leukocyte DNA for MHC class II histocompatibility antigen,
           partial cds
          Length = 210

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 109 gtgtcatttcttcactgga 127
           |||||||||||||||||||
Sbjct: 18  gtgtcatttcttcactgga 36


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,096,592
Number of Sequences: 3902068
Number of extensions: 2096592
Number of successful extensions: 169095
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 168728
Number of HSP's gapped (non-prelim): 367
length of query: 192
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 170
effective length of database: 17,147,199,772
effective search space: 2915023961240
effective search space used: 2915023961240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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