ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 42 1.4
2gb|AC150414.2| Branchiostoma floridae clone CH302-62C22, complet... 40 5.4
3gb|AC137836.25| Medicago truncatula clone mth2-10f14, complete s... 40 5.4
4gb|AC166352.1| Mus musculus BAC clone RP24-234M1 from chromosome... 40 5.4
5gb|AC139290.15| Medicago truncatula clone mth2-23f4, complete se... 40 5.4
6gb|AC107302.4| Homo sapiens 3 BAC RP11-564P9 (Roswell Park Cance... 40 5.4
7gb|AC099049.2| Homo sapiens chromosome 3 clone RP11-291P10, comp... 40 5.4
8gb|AC137524.4| Mus musculus BAC clone RP23-55M20 from chromosome... 40 5.4
9gb|AC010366.6| Homo sapiens chromosome 5 clone CTD-2044J15, comp... 40 5.4
10gb|AF321236.1|AF321236 Mus musculus chromosome 7E3 m50 olfactory... 40 5.4
11gb|AY188864.1| Streblomastix strix clone 1 heat shock protein 90... 40 5.4
12dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 40 5.4
13gb|AC154277.1| Mus musculus BAC clone RP24-266G7 from 9, complet... 40 5.4

>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 234     tcctgaatattgtcttcagtc 254
               |||||||||||||||||||||
Sbjct: 3158977 tcctgaatattgtcttcagtc 3158957



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>gb|AC150414.2| Branchiostoma floridae clone CH302-62C22, complete sequence
          Length = 210179

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    ttcggattccgatgttcaaa 182
              ||||||||||||||||||||
Sbjct: 116365 ttcggattccgatgttcaaa 116346



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>gb|AC137836.25| Medicago truncatula clone mth2-10f14, complete sequence
          Length = 140197

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   gttcaaattgtaattgtgtt 195
             ||||||||||||||||||||
Sbjct: 96968 gttcaaattgtaattgtgtt 96987



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>gb|AC166352.1| Mus musculus BAC clone RP24-234M1 from chromosome 9, complete sequence
          Length = 166299

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    ggagacttttcaagctctac 341
              ||||||||||||||||||||
Sbjct: 147682 ggagacttttcaagctctac 147663



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>gb|AC139290.15| Medicago truncatula clone mth2-23f4, complete sequence
          Length = 127701

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    gttcaaattgtaattgtgtt 195
              ||||||||||||||||||||
Sbjct: 125802 gttcaaattgtaattgtgtt 125821



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>gb|AC107302.4| Homo sapiens 3 BAC RP11-564P9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 194234

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     agatggctagtaggtagattaata 29
             ||||||||||||||| ||||||||
Sbjct: 14767 agatggctagtaggttgattaata 14790



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>gb|AC099049.2| Homo sapiens chromosome 3 clone RP11-291P10, complete sequence
          Length = 180339

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 6     agatggctagtaggtagattaata 29
             ||||||||||||||| ||||||||
Sbjct: 76544 agatggctagtaggttgattaata 76521



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>gb|AC137524.4| Mus musculus BAC clone RP23-55M20 from chromosome 7, complete sequence
          Length = 253824

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    tgttcaaattgtaattgtgt 194
              ||||||||||||||||||||
Sbjct: 137976 tgttcaaattgtaattgtgt 137957



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>gb|AC010366.6| Homo sapiens chromosome 5 clone CTD-2044J15, complete sequence
          Length = 115396

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   aaattgtaatgaattacttc 235
             ||||||||||||||||||||
Sbjct: 39272 aaattgtaatgaattacttc 39291



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>gb|AF321236.1|AF321236 Mus musculus chromosome 7E3 m50 olfactory receptor and B3 olfactory
            receptor genes, complete cds
          Length = 20744

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  tgttcaaattgtaattgtgt 194
            ||||||||||||||||||||
Sbjct: 4134 tgttcaaattgtaattgtgt 4153



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>gb|AY188864.1| Streblomastix strix clone 1 heat shock protein 90 gene, partial cds
          Length = 1696

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 217  aattgtaatgaattacttcctgaatatt 244
            |||||| |||||||| ||||||||||||
Sbjct: 992  aattgtgatgaattaattcctgaatatt 1019



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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     aataaaagtatacgttacaa 95
              ||||||||||||||||||||
Sbjct: 708282 aataaaagtatacgttacaa 708263



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>gb|AC154277.1| Mus musculus BAC clone RP24-266G7 from 9, complete sequence
          Length = 168300

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    ggagacttttcaagctctac 341
              ||||||||||||||||||||
Sbjct: 124123 ggagacttttcaagctctac 124142


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,679,949
Number of Sequences: 3902068
Number of extensions: 3679949
Number of successful extensions: 69973
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69941
Number of HSP's gapped (non-prelim): 32
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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