ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EGR2_RAT (P51774) Early growth response protein 2 (EGR-2) (Krox-... 31 1.0
2EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Kro... 31 1.0
3EGR2_HUMAN (P11161) Early growth response protein 2 (EGR-2) (Kro... 29 5.2
4CSF2R_MOUSE (Q00941) Granulocyte-macrophage colony-stimulating f... 28 6.7

>EGR2_RAT (P51774) Early growth response protein 2 (EGR-2) (Krox-20 protein)|
          Length = 470

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 331 RQDKHIGAGPDRAAGSCPSDSLHLP 257
           ++D H  AGPDR    CP DSL +P
Sbjct: 235 QRDPHGAAGPDRKPFPCPLDSLRVP 259



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>EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Krox-20 protein)|
          Length = 470

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 331 RQDKHIGAGPDRAAGSCPSDSLHLP 257
           ++D H  AGPDR    CP DSL +P
Sbjct: 235 QRDPHGAAGPDRKPFPCPLDSLRVP 259



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>EGR2_HUMAN (P11161) Early growth response protein 2 (EGR-2) (Krox-20 protein)|
           (AT591)
          Length = 476

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 331 RQDKHIGAGPDRAAGSCPSDSLHLP 257
           ++D H  AGPDR    CP D+L +P
Sbjct: 235 QRDLHGTAGPDRKPFPCPLDTLRVP 259



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>CSF2R_MOUSE (Q00941) Granulocyte-macrophage colony-stimulating factor receptor|
           alpha chain precursor (GM-CSF-R-alpha) (GMR) (CD116
           antigen)
          Length = 388

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 214 AKLISKRWFTGPEAPVDGGYHWDKTQQRDLDLLRCACPDGD 336
           A+ +S  W  GP AP D  Y          D+ RC    GD
Sbjct: 140 ARFLSCAWREGPAAPADVRYSLRVLNSTGHDVARCMADPGD 180


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,653,333
Number of Sequences: 219361
Number of extensions: 1381311
Number of successful extensions: 3267
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3263
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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