>NGN2_MOUSE (P70447) Neurogenin 2 (Atonal protein homolog 4) (Helix-loop-helix|
           protein mATH-4A) (MATH4A)
          Length = 263

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 141 SPP*PALWPVTVSPAWLGRSPHAKNRQTHLAFPGYPGADVDFFQSP 278
           SP  P+ W  T SPA    S ++ +  +    P  PG+DVD++Q P
Sbjct: 203 SPSPPSSWSCTNSPA---SSSNSTSPYSCTLSPASPGSDVDYWQPP 245

>POTE1_CHICK (P62597) Protection of telomeres 1 (cPot1) (POT1-like telomere|
           end-binding protein)
          Length = 778

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 208 RKTDRHTSHFQATQEQ-MWISFKVQPTILPLNKTTSPEVSQPF 333
           R+  RH  H Q ++E    I    QP+I P ++ TSP V+  +
Sbjct: 111 REDGRHACHLQVSEESGSAIFICTQPSITPFSEATSPSVAPKY 153

>BRCA2_MOUSE (P97929) Breast cancer type 2 susceptibility protein homolog (Fanconi|
            anemia group D1 protein homolog)
          Length = 3329

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 13/52 (25%)
 Frame = -1

Query: 124  TMW-LAVSS--KKTKFAVLT----------LFCEGKRYKSSGVAVSSKKTKF 8
            T+W L V+S  KK K A+L+          L  EGKRY+   +AVS  K+KF
Sbjct: 2888 TVWKLRVTSYKKKEKSALLSIWRPSSDLSSLLTEGKRYRIYHLAVSKSKSKF 2939

>ATM_KLULA (Q6CP76) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase TEL1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2761

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
 Frame = -3

Query: 404 LLCFLVFFFLIHLERNAPAAHTRKNGCDTSGLVVLFSGKIVGW------TLKEIHICSWV 243
           L+C   F F +HL   A    T K     S +  +FS     W       + E H   + 
Sbjct: 543 LVCNESFKFWMHLHYYAKTFQTVK-----SPITYVFSWLYARWDQLFTLVVSETHFYVFA 597

Query: 242 AWKCEVCLSVFRMWRPTKPSRRHGHRPQCRLWWGYAGDKDDVAG 111
           +W C    + F  +  ++PS  H        W G + ++  + G
Sbjct: 598 SWLCGCTHTTFPTFEYSRPSLFHD------TWMGLSEERASITG 635

>MTHD_HAEIN (P44414) Probable modification methylase HindII (EC 2.1.1.72)|
           (Adenine-specific methyltransferase HindII) (M.HindII)
          Length = 518

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 406 YCFASSCFFSLFIWKGMLQLLILGRMAAILRDWLFCSVVKSLAGL*K 266
           YC +   +F +FI K +LQL + G +  I  D+ F +  K+  GL K
Sbjct: 117 YCNSLCDYFYIFIIKSILQLKVGGELIFICPDYFFST--KNAEGLRK 161

>MTHC_HAEIN (P17744) Modification methylase HincII (EC 2.1.1.72)|
           (Adenine-specific methyltransferase HincII) (M.HincII)
          Length = 502

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 406 YCFASSCFFSLFIWKGMLQLLILGRMAAILRDWLFCSVVKSLAGL*K 266
           YC +   +F +FI K +LQL + G +  I  D+ F +  K+  GL K
Sbjct: 117 YCNSLCDYFYIFIIKSILQLKVGGELIFICPDYFFST--KNAEGLRK 161

>SORL_CHICK (Q98930) Sortilin-related receptor (Sorting protein-related receptor|
            containing LDLR class A repeats) (SorLA) (SorLA-1)
            (Low-density lipoprotein receptor relative with 11
            ligand-binding repeats) (LDLR relative with 11
            ligand-binding repeats) (
          Length = 1592

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 200  ATCEKPTDTPRISRLPRSRCG 262
            A+CE PTD P  SR  + +CG
Sbjct: 1264 ASCENPTDAPTCSRYYQFQCG 1284

>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus)
           (Mammalian branch point-binding protein mBBP) (BBP)
           (CW17)
          Length = 653

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +3

Query: 132 PCISPP*PALWPVTVS-PAWLGRSPHAKNRQ---THLAFPGYPGADVDFFQSPANDFT 293
           P  +PP P+L   T S P W+   P ++NR     H   PG PG     F  P    T
Sbjct: 349 PASNPPPPSLMSTTQSRPPWMNSGP-SENRPYHGMHGGGPGGPGGGPHSFPHPLPSLT 405

>RZ1_BP933 (Q9XJJ7) Outer membrane lipoprotein Rz1 precursor|
          Length = 61

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 129 VPCISPP*PALWPVTVSPAW 188
           VPC+ PP P  W +  +P W
Sbjct: 28  VPCVKPPAPPAWIMQPAPDW 47

>SPC98_YEAST (P53540) Spindle pole body component SPC98|
          Length = 846

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 300 VQW*NRWLDFERNPHLLLGSLEMRGVSVGFSHVATDQ 190
           VQW N   +F +  H+L  S   RG+S  F  +  DQ
Sbjct: 419 VQWTN---EFSKKYHVLYQSNSYRGISTNFFEIINDQ 452

>LY75_HUMAN (O60449) Lymphocyte antigen 75 precursor (DEC-205) (gp200-MR6) (CD205|
            antigen)
          Length = 1722

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 200  ATCEKPTDTPRISRLP-RSRCGFLSKSSQRFYH*TKQPVPKYRSHSS*YEQLEHSF 364
            A C KPT + ++SRL   SRC    ++  R+         +Y+ H    +Q  HSF
Sbjct: 1509 AICYKPTKSKKLSRLTYSSRCPAAKENGSRWI--------QYKGHCYKSDQALHSF 1556

>BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated protein|
          Length = 653

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 21/87 (24%)
 Frame = +3

Query: 201 PHAKNRQTHLAFPGYPGADVDFFQSP-ANDFTTEQNNQSRS------------------- 320
           P A+++    +  G PG+DV F Q+  + D T E+  +                      
Sbjct: 285 PEARHQDRRPSVEG-PGSDVGFLQAQNSTDSTAEEEEEEEEDTEAGAAAYPASYRHEAFG 343

Query: 321 -IAAILPSMSSWSIPFQMNKEKKHEEA 398
             AA LP+ SS+S     ++EK+H +A
Sbjct: 344 GYAASLPTSSSYSSFSAASEEKEHAQA 370

>ARR10_ARATH (O49397) Two-component response regulator ARR10 (Receiver-like|
           protein 4)
          Length = 552

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 213 NRQTHLAFPGYPGADVDFFQSPANDFTTEQNNQSRSIAAILPSMSSWSIPFQMNKEKKH 389
           N   + AFP +         +P+N    E N QS S    LPS   +S  F+++K  +H
Sbjct: 340 NNNINRAFPSFTSQQNSPMVAPSNLLLLEGNPQSSS----LPSNPGFSPHFEISKRLEH 394

>SQD1_ARATH (O48917) UDP-sulfoquinovose synthase, chloroplast precursor (EC|
           3.13.1.1) (Sulfite:UDP-glucose sulfotransferase)
           (Sulfolipid biosynthesis protein)
          Length = 477

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -2

Query: 198 TDQAKPET--RSPATVPAMVGICRGQGRCGW 112
           T QA PET   + ++ P  V +  G G CGW
Sbjct: 68  TQQAPPETSTNNSSSKPKRVMVIGGDGYCGW 98

>ECHM_BOVIN (Q58DM8) Enoyl-CoA hydratase, mitochondrial precursor (EC 4.2.1.17)|
           (Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA
           hydratase 1)
          Length = 290

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 343 ILGRMAAILRDWLFCSVVKSLA 278
           +L R+ A LR WLFC V +S A
Sbjct: 7   LLPRVRAPLRPWLFCPVQRSFA 28

>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)|
          Length = 1332

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 197  VATCEKPTDTPRISRLPR--SRCGFLSKSSQRFYH*TKQPVPKYRSHS 334
            ++TC     TP  +  PR   RC  LS S     H    PVP  ++ S
Sbjct: 1252 ISTCPNSPSTPPSTPSPRVPRRCYVLSSSQNNLAHPPAPPVPPRQNSS 1299

>SYFB_DESDG (Q30Y16) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 800

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -2

Query: 237 EMRGVSVGFSHVATDQAKPETRSPATVPAMVGI----CRGQGRCGWLCHQRRL 91
           E+  +  G  +VA  Q  P  +   T+P+ + I     RGQ  CG +C +  L
Sbjct: 72  EVLDIVCGAPNVAAGQKVPVAKVGVTMPSGLKIKKAKLRGQPSCGMICSESEL 124

>AMPA_STRAW (Q82AN2) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 513

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 353 PAAHTRKNGCDTSGLVVLFSGKIVGWTL-KEIHICSWVA 240
           PA H     CD SG   +F+  +    L  E+++  W+A
Sbjct: 288 PAGHNETMKCDMSGAAAVFAAVVAAARLGLEVNVTGWLA 326

>CP1A1_CANFA (P56590) Cytochrome P450 1A1 (EC 1.14.14.1) (CYPIA1) (DAH1)|
          Length = 524

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 141 SPP*PALWPVTVSPAWLGRSPH 206
           SPP P  WPV  +   LG+SPH
Sbjct: 43  SPPGPWGWPVLGNVLTLGKSPH 64

>SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor|
          Length = 833

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 338 RKNGCDTSGLVVLFSGKIVGWTLKEIHICSWV 243
           R  G D +   VLF G   GW LK + +  WV
Sbjct: 427 RVTGLDGATYTVLFIGTGDGWLLKAVSLGPWV 458

>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)|
          Length = 815

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +3

Query: 171 TVSPAWLGRSPHAKNRQTHLAFPGYPGADVDFFQSPANDFTTEQNNQSRSIAAILPSMSS 350
           T SPA    SPH        + PG P +     QSPA       NN + +   ++  M  
Sbjct: 477 TSSPAPPAMSPHHSLNSAGPS-PGMPNSGPSPLQSPAGPNGPNNNNSNNNNGPMMGQMIP 535

Query: 351 WSIPFQ 368
            ++P Q
Sbjct: 536 NAVPMQ 541


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,321,185
Number of Sequences: 219361
Number of extensions: 1618972
Number of successful extensions: 4837
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4836
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)