ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 1... 42 0.59
2emb|AM162280.1| Grapevine leafroll-associated virus 4 partial HS... 42 0.59
3emb|AL392185.10| Human DNA sequence from clone RP11-332M4 on chr... 40 2.3
4gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, compl... 38 9.2
5ref|XM_589413.2| PREDICTED: Bos taurus similar to secernin 3 (LO... 38 9.2
6gb|AC147233.3| Mus musculus BAC clone RP23-350J18 from chromosom... 38 9.2
7gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosom... 38 9.2
8gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, comple... 38 9.2
9ref|XM_534845.2| PREDICTED: Canis familiaris similar to CG6004-P... 38 9.2
10emb|CR956427.7| Pig DNA sequence from clone CH242-51O7 on chromo... 38 9.2
11gb|AC130837.4| Mus musculus BAC clone RP24-157P23 from chromosom... 38 9.2
12gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, comple... 38 9.2
13gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete seq... 38 9.2
14gb|AC118543.30| Mus musculus strain C57BL/6J clone rp23-254b17 m... 38 9.2
15emb|AL591962.15| Human DNA sequence from clone RP11-346O16 on ch... 38 9.2
16emb|Y10196.1|HSPEX Homo sapiens PHEX gene 38 9.2
17emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 i... 38 9.2
18gb|AC105902.2| Homo sapiens chromosome 3 clone RP11-578F5, compl... 38 9.2
19gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete seq... 38 9.2
20gb|AC024568.6| Homo sapiens chromosome 5 clone CTD-2179L22, comp... 38 9.2
21gb|AC008493.5| Homo sapiens chromosome 5 clone CTC-427G18, compl... 38 9.2
22ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA 38 9.2
23ref|NM_001026661.1| Caenorhabditis elegans Y87G2A.16 (Y87G2A.16)... 38 9.2
24gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone... 38 9.2
25dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
27dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
28dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
29dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
30emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, compl... 38 9.2
31emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chrom... 38 9.2
32gb|AC158530.2| Mus musculus BAC clone RP23-255H12 from chromosom... 38 9.2

>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the
            complete genome
          Length = 11901

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 90   gttttttgtcaaaaaaggcct 110
            |||||||||||||||||||||
Sbjct: 4932 gttttttgtcaaaaaaggcct 4912



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>emb|AM162280.1| Grapevine leafroll-associated virus 4 partial HSP70h gene for heat
           shock protein 70 homologue, genomic RNA, isolate Y252-IL
          Length = 604

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 160 gttgaaaatccatcttcagtc 180
           |||||||||||||||||||||
Sbjct: 574 gttgaaaatccatcttcagtc 594



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>emb|AL392185.10| Human DNA sequence from clone RP11-332M4 on chromosome 9 Contain a
             novel gene, complete sequence
          Length = 69582

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   agttgaaaatccatcttcag 178
             ||||||||||||||||||||
Sbjct: 64286 agttgaaaatccatcttcag 64267



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>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds
          Length = 987

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 atggaagggagttgggaga 133
           |||||||||||||||||||
Sbjct: 98  atggaagggagttgggaga 116



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>ref|XM_589413.2| PREDICTED: Bos taurus similar to secernin 3 (LOC511983), mRNA
          Length = 1632

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 6    aaagcatgaaacattaaaa 24
            |||||||||||||||||||
Sbjct: 1606 aaagcatgaaacattaaaa 1624



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>gb|AC147233.3| Mus musculus BAC clone RP23-350J18 from chromosome 8, complete sequence
          Length = 185319

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 117    ggaagggagttgggagaaa 135
              |||||||||||||||||||
Sbjct: 110190 ggaagggagttgggagaaa 110172



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>gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosome 9, complete sequence
          Length = 200549

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 115    atggaagggagttgggaga 133
              |||||||||||||||||||
Sbjct: 148279 atggaagggagttgggaga 148261



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>gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, complete sequence
          Length = 157092

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 94     tttgtcaaaaaaggcctcatcat 116
              ||||||| |||||||||||||||
Sbjct: 125015 tttgtcagaaaaggcctcatcat 124993



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>ref|XM_534845.2| PREDICTED: Canis familiaris similar to CG6004-PB (LOC477650), mRNA
          Length = 5410

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 120  agggagttgggagaaatca 138
            |||||||||||||||||||
Sbjct: 4437 agggagttgggagaaatca 4455



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>emb|CR956427.7| Pig DNA sequence from clone CH242-51O7 on chromosome 6, complete
             sequence
          Length = 187800

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 159   agttgaaaatccatcttca 177
             |||||||||||||||||||
Sbjct: 46210 agttgaaaatccatcttca 46192



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>gb|AC130837.4| Mus musculus BAC clone RP24-157P23 from chromosome 8, complete sequence
          Length = 155270

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 117    ggaagggagttgggagaaa 135
              |||||||||||||||||||
Sbjct: 147273 ggaagggagttgggagaaa 147291



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>gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, complete sequence
          Length = 70276

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     caaaagcatgaaacattaa 22
             |||||||||||||||||||
Sbjct: 33083 caaaagcatgaaacattaa 33101



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>gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete sequence
          Length = 119095

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 122   ggagttgggagaaatcatt 140
             |||||||||||||||||||
Sbjct: 12902 ggagttgggagaaatcatt 12884



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>gb|AC118543.30| Mus musculus strain C57BL/6J clone rp23-254b17 map 17, complete sequence
          Length = 241570

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    catggaagggagttgggag 132
              |||||||||||||||||||
Sbjct: 100577 catggaagggagttgggag 100595



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>emb|AL591962.15| Human DNA sequence from clone RP11-346O16 on chromosome 6, complete
             sequence
          Length = 86881

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 6     aaagcatgaaacattaaaaggga 28
             ||||||||||||| |||||||||
Sbjct: 65343 aaagcatgaaacaataaaaggga 65321



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>emb|Y10196.1|HSPEX Homo sapiens PHEX gene
          Length = 242825

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 64     aacttcacatttattctta 82
              |||||||||||||||||||
Sbjct: 120623 aacttcacatttattctta 120641



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>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10,
            complete sequence
          Length = 167771

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 115  atggaagggagttgggaga 133
            |||||||||||||||||||
Sbjct: 2324 atggaagggagttgggaga 2342



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>gb|AC105902.2| Homo sapiens chromosome 3 clone RP11-578F5, complete sequence
          Length = 163115

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 125    gttgggagaaatcattgca 143
              |||||||||||||||||||
Sbjct: 113023 gttgggagaaatcattgca 113005



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>gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete sequence
          Length = 129121

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 164   aaaatccatcttcagtctc 182
             |||||||||||||||||||
Sbjct: 47164 aaaatccatcttcagtctc 47182



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>gb|AC024568.6| Homo sapiens chromosome 5 clone CTD-2179L22, complete sequence
          Length = 128501

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    ttcacatttattcttacac 85
             |||||||||||||||||||
Sbjct: 38564 ttcacatttattcttacac 38546



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>gb|AC008493.5| Homo sapiens chromosome 5 clone CTC-427G18, complete sequence
          Length = 107137

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    ttcacatttattcttacac 85
             |||||||||||||||||||
Sbjct: 47886 ttcacatttattcttacac 47904



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>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA
          Length = 987

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 atggaagggagttgggaga 133
           |||||||||||||||||||
Sbjct: 98  atggaagggagttgggaga 116



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>ref|NM_001026661.1| Caenorhabditis elegans Y87G2A.16 (Y87G2A.16) mRNA, complete cds
          Length = 1071

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 62  caaacttcacatttattct 80
           |||||||||||||||||||
Sbjct: 797 caaacttcacatttattct 815



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>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381
           IMAGE:7410517), complete cds
          Length = 968

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 115 atggaagggagttgggaga 133
           |||||||||||||||||||
Sbjct: 81  atggaagggagttgggaga 99



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 83      caccaccgttttttgtcaa 101
               |||||||||||||||||||
Sbjct: 5188658 caccaccgttttttgtcaa 5188676



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 154    acactagttgaaaatccat 172
              |||||||||||||||||||
Sbjct: 946744 acactagttgaaaatccat 946726



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>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1442_E05
          Length = 162407

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 154    acactagttgaaaatccat 172
              |||||||||||||||||||
Sbjct: 155952 acactagttgaaaatccat 155934



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>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0016O19
          Length = 169120

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 83    caccaccgttttttgtcaa 101
             |||||||||||||||||||
Sbjct: 55380 caccaccgttttttgtcaa 55398



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>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1217_F02
          Length = 118822

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 154   acactagttgaaaatccat 172
             |||||||||||||||||||
Sbjct: 18163 acactagttgaaaatccat 18145



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>emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, complete sequence
          Length = 123091

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    caaacttcacatttattct 80
             |||||||||||||||||||
Sbjct: 72393 caaacttcacatttattct 72411



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>emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chromosome 6, complete sequence
          Length = 174170

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 159    agttgaaaatccatcttca 177
              |||||||||||||||||||
Sbjct: 156157 agttgaaaatccatcttca 156139



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>gb|AC158530.2| Mus musculus BAC clone RP23-255H12 from chromosome 17, complete sequence
          Length = 154287

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    catggaagggagttgggag 132
              |||||||||||||||||||
Sbjct: 132912 catggaagggagttgggag 132930


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,093,222
Number of Sequences: 3902068
Number of extensions: 2093222
Number of successful extensions: 149853
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149685
Number of HSP's gapped (non-prelim): 168
length of query: 186
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 164
effective length of database: 17,147,199,772
effective search space: 2812140762608
effective search space used: 2812140762608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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