Clone Name | rbastl26g03 |
---|---|
Clone Library Name | barley_pub |
>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the complete genome Length = 11901 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gttttttgtcaaaaaaggcct 110 ||||||||||||||||||||| Sbjct: 4932 gttttttgtcaaaaaaggcct 4912
>emb|AM162280.1| Grapevine leafroll-associated virus 4 partial HSP70h gene for heat shock protein 70 homologue, genomic RNA, isolate Y252-IL Length = 604 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 gttgaaaatccatcttcagtc 180 ||||||||||||||||||||| Sbjct: 574 gttgaaaatccatcttcagtc 594
>emb|AL392185.10| Human DNA sequence from clone RP11-332M4 on chromosome 9 Contain a novel gene, complete sequence Length = 69582 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 agttgaaaatccatcttcag 178 |||||||||||||||||||| Sbjct: 64286 agttgaaaatccatcttcag 64267
>gb|AY648725.1| Danio rerio Opa-interacting protein 2 mRNA, complete cds Length = 987 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 atggaagggagttgggaga 133 ||||||||||||||||||| Sbjct: 98 atggaagggagttgggaga 116
>ref|XM_589413.2| PREDICTED: Bos taurus similar to secernin 3 (LOC511983), mRNA Length = 1632 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 aaagcatgaaacattaaaa 24 ||||||||||||||||||| Sbjct: 1606 aaagcatgaaacattaaaa 1624
>gb|AC147233.3| Mus musculus BAC clone RP23-350J18 from chromosome 8, complete sequence Length = 185319 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 117 ggaagggagttgggagaaa 135 ||||||||||||||||||| Sbjct: 110190 ggaagggagttgggagaaa 110172
>gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosome 9, complete sequence Length = 200549 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 115 atggaagggagttgggaga 133 ||||||||||||||||||| Sbjct: 148279 atggaagggagttgggaga 148261
>gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, complete sequence Length = 157092 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 tttgtcaaaaaaggcctcatcat 116 ||||||| ||||||||||||||| Sbjct: 125015 tttgtcagaaaaggcctcatcat 124993
>ref|XM_534845.2| PREDICTED: Canis familiaris similar to CG6004-PB (LOC477650), mRNA Length = 5410 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 agggagttgggagaaatca 138 ||||||||||||||||||| Sbjct: 4437 agggagttgggagaaatca 4455
>emb|CR956427.7| Pig DNA sequence from clone CH242-51O7 on chromosome 6, complete sequence Length = 187800 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 159 agttgaaaatccatcttca 177 ||||||||||||||||||| Sbjct: 46210 agttgaaaatccatcttca 46192
>gb|AC130837.4| Mus musculus BAC clone RP24-157P23 from chromosome 8, complete sequence Length = 155270 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 117 ggaagggagttgggagaaa 135 ||||||||||||||||||| Sbjct: 147273 ggaagggagttgggagaaa 147291
>gb|AC073095.4| Homo sapiens BAC clone RP11-384A20 from 7, complete sequence Length = 70276 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 caaaagcatgaaacattaa 22 ||||||||||||||||||| Sbjct: 33083 caaaagcatgaaacattaa 33101
>gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete sequence Length = 119095 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 122 ggagttgggagaaatcatt 140 ||||||||||||||||||| Sbjct: 12902 ggagttgggagaaatcatt 12884
>gb|AC118543.30| Mus musculus strain C57BL/6J clone rp23-254b17 map 17, complete sequence Length = 241570 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 114 catggaagggagttgggag 132 ||||||||||||||||||| Sbjct: 100577 catggaagggagttgggag 100595
>emb|AL591962.15| Human DNA sequence from clone RP11-346O16 on chromosome 6, complete sequence Length = 86881 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 6 aaagcatgaaacattaaaaggga 28 ||||||||||||| ||||||||| Sbjct: 65343 aaagcatgaaacaataaaaggga 65321
>emb|Y10196.1|HSPEX Homo sapiens PHEX gene Length = 242825 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 aacttcacatttattctta 82 ||||||||||||||||||| Sbjct: 120623 aacttcacatttattctta 120641
>emb|BX465844.25| Zebrafish DNA sequence from clone CH211-106I3 in linkage group 10, complete sequence Length = 167771 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 atggaagggagttgggaga 133 ||||||||||||||||||| Sbjct: 2324 atggaagggagttgggaga 2342
>gb|AC105902.2| Homo sapiens chromosome 3 clone RP11-578F5, complete sequence Length = 163115 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 125 gttgggagaaatcattgca 143 ||||||||||||||||||| Sbjct: 113023 gttgggagaaatcattgca 113005
>gb|AC137080.13| Medicago truncatula clone mth2-9a7, complete sequence Length = 129121 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 164 aaaatccatcttcagtctc 182 ||||||||||||||||||| Sbjct: 47164 aaaatccatcttcagtctc 47182
>gb|AC024568.6| Homo sapiens chromosome 5 clone CTD-2179L22, complete sequence Length = 128501 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 ttcacatttattcttacac 85 ||||||||||||||||||| Sbjct: 38564 ttcacatttattcttacac 38546
>gb|AC008493.5| Homo sapiens chromosome 5 clone CTC-427G18, complete sequence Length = 107137 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 ttcacatttattcttacac 85 ||||||||||||||||||| Sbjct: 47886 ttcacatttattcttacac 47904
>ref|NM_001002865.1| Danio rerio exosome component 8 (exosc8), mRNA Length = 987 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 atggaagggagttgggaga 133 ||||||||||||||||||| Sbjct: 98 atggaagggagttgggaga 116
>ref|NM_001026661.1| Caenorhabditis elegans Y87G2A.16 (Y87G2A.16) mRNA, complete cds Length = 1071 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 caaacttcacatttattct 80 ||||||||||||||||||| Sbjct: 797 caaacttcacatttattct 815
>gb|BC095236.1| Danio rerio exosome component 8, mRNA (cDNA clone MGC:110381 IMAGE:7410517), complete cds Length = 968 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 115 atggaagggagttgggaga 133 ||||||||||||||||||| Sbjct: 81 atggaagggagttgggaga 99
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 caccaccgttttttgtcaa 101 ||||||||||||||||||| Sbjct: 5188658 caccaccgttttttgtcaa 5188676
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 154 acactagttgaaaatccat 172 ||||||||||||||||||| Sbjct: 946744 acactagttgaaaatccat 946726
>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1442_E05 Length = 162407 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 154 acactagttgaaaatccat 172 ||||||||||||||||||| Sbjct: 155952 acactagttgaaaatccat 155934
>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016O19 Length = 169120 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 caccaccgttttttgtcaa 101 ||||||||||||||||||| Sbjct: 55380 caccaccgttttttgtcaa 55398
>dbj|AP004084.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1217_F02 Length = 118822 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 154 acactagttgaaaatccat 172 ||||||||||||||||||| Sbjct: 18163 acactagttgaaaatccat 18145
>emb|AL110500.1|CEY87G2A Caenorhabditis elegans YAC Y87G2A, complete sequence Length = 123091 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 caaacttcacatttattct 80 ||||||||||||||||||| Sbjct: 72393 caaacttcacatttattct 72411
>emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chromosome 6, complete sequence Length = 174170 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 159 agttgaaaatccatcttca 177 ||||||||||||||||||| Sbjct: 156157 agttgaaaatccatcttca 156139
>gb|AC158530.2| Mus musculus BAC clone RP23-255H12 from chromosome 17, complete sequence Length = 154287 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 114 catggaagggagttgggag 132 ||||||||||||||||||| Sbjct: 132912 catggaagggagttgggag 132930 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,093,222 Number of Sequences: 3902068 Number of extensions: 2093222 Number of successful extensions: 149853 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149685 Number of HSP's gapped (non-prelim): 168 length of query: 186 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 164 effective length of database: 17,147,199,772 effective search space: 2812140762608 effective search space used: 2812140762608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)