ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1URIC_RABIT (P11645) Uricase (EC 1.7.3.3) (Urate oxidase) 28 4.7
2YSS2_CAEEL (Q09991) Putative serine carboxypeptidase K10B2.2 pre... 28 8.1
3SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat... 28 8.1

>URIC_RABIT (P11645) Uricase (EC 1.7.3.3) (Urate oxidase)|
          Length = 300

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
 Frame = +3

Query: 63  KSFSICLLRICTLM------IIRKHNVQHSQTWKKFNNYFYNKIQHAKAFLH*PT 209
           KS  +  + IC         ++R H       WK+      N +QH  AF+H PT
Sbjct: 81  KSIEVFAMNICEHFLSSFNHVVRVHVYVEEVPWKRLEK---NGVQHVHAFIHTPT 132



to top

>YSS2_CAEEL (Q09991) Putative serine carboxypeptidase K10B2.2 precursor (EC|
           3.4.16.-)
          Length = 470

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 48  TTSAKKSFSICLLRICTLMIIRKHNVQHSQTW--KKFNNYFYNKIQHAKAFLH*PTTWPA 221
           TT+ KK+F    +RI   +  RKHN   +     +  N + Y      +  LH P++ PA
Sbjct: 280 TTNLKKAFIERQMRIAVGLPARKHNAATTVPLCAQTNNTHVYLNRADVRKSLHIPSSLPA 339

Query: 222 ARSC 233
              C
Sbjct: 340 WEEC 343



to top

>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)|
            (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus
            and actin connecting element protein) (NUANCE protein)
          Length = 6885

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 14   QVCSTDLALALDNISKKILQYMSATYMHTNDHXXXXXXXXPNLEKIQQL 160
            QVC TDL   LDN SK+ + +        +D           L+K+Q+L
Sbjct: 2255 QVCVTDLNTTLDNFSKEFVSF--------SDKPVDQIAVEEKLQKLQEL 2295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,094,859
Number of Sequences: 219361
Number of extensions: 598095
Number of successful extensions: 1495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top