ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein) 31 1.4
2MYB1_NEUCR (O13493) Myb-like DNA binding protein myb-1 30 1.8
3TRPD2_RALSO (Q8XS00) Anthranilate phosphoribosyltransferase 2 (E... 28 8.8
4SOSD1_RAT (Q642G2) Sclerostin domain-containing protein 1 precur... 28 8.8
5SOSD1_MOUSE (Q9CQN4) Sclerostin domain-containing protein 1 prec... 28 8.8
6DCTA_PSESM (Q885Z9) C4-dicarboxylate transport protein 28 8.8
7TRPD_PROMT (Q46L78) Anthranilate phosphoribosyltransferase (EC 2... 28 8.8
8TRPD1_RALSO (Q8XVE7) Anthranilate phosphoribosyltransferase 1 (E... 28 8.8

>VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein)|
          Length = 959

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 218 KQTTSATSHRITSPSVTRPLRFLAPTVVMFK 310
           K TT+AT   IT+P+VT P     PTV   K
Sbjct: 834 KPTTAATPKPITTPTVTTPKPITTPTVATLK 864



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>MYB1_NEUCR (O13493) Myb-like DNA binding protein myb-1|
          Length = 324

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 153 PSKPAQDHDQQVMATKTTSIFTSKLPPPH 239
           PS+P Q   QQ    + T+ FTS  PP H
Sbjct: 179 PSRPQQQQQQQQQQARCTTPFTSFYPPSH 207



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>TRPD2_RALSO (Q8XS00) Anthranilate phosphoribosyltransferase 2 (EC 2.4.2.18)|
          Length = 344

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 96  GISYTFCDHHHPKGLDLVPIRAMLSNSKVFCL 1
           GI + F   HHP    L+P+R  L+   +F L
Sbjct: 147 GIGFMFAPTHHPALKQLMPVRVDLATRTIFNL 178



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>SOSD1_RAT (Q642G2) Sclerostin domain-containing protein 1 precursor (Uterine|
           sensitization-associated gene 1 protein) (USAG-1)
           (Wnt-signaling modulator)
          Length = 206

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 81  KCMRFLRTVGYYNHVYDQILKIQRPSKPAQDHDQQVMATKTT 206
           KC R+ R     +H ++ +     P+KPAQ H ++  A+K++
Sbjct: 164 KCKRYTRQHNESSHNFESV----SPAKPAQHHRERKRASKSS 201



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>SOSD1_MOUSE (Q9CQN4) Sclerostin domain-containing protein 1 precursor|
           (Ectodermal BMP inhibitor) (Ectodin) (Uterine
           sensitization-associated gene 1 protein) (USAG-1)
           (Sclerostin-like protein)
          Length = 206

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 81  KCMRFLRTVGYYNHVYDQILKIQRPSKPAQDHDQQVMATKTT 206
           KC R+ R     +H ++ +     P+KPAQ H ++  A+K++
Sbjct: 164 KCKRYTRQHNESSHNFESV----SPAKPAQHHRERKRASKSS 201



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>DCTA_PSESM (Q885Z9) C4-dicarboxylate transport protein|
          Length = 460

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -2

Query: 422 STILSGMSAILSGRGCKTTLTIAEGPSPCNSV 327
           S + SG SAIL  R  +  L +AEGP+P N+V
Sbjct: 424 SELASGGSAILETRP-EDDLGVAEGPTPANAV 454



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>TRPD_PROMT (Q46L78) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)|
          Length = 345

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 111 SLRFLGISYTFCDHHHPKGLDLVPIRAMLSNSKVFCL 1
           +L+ LGI++ F    HP  ++L P+R  L    +F L
Sbjct: 149 ALKKLGITFLFAPSWHPSLVNLAPLRKSLGVRTIFNL 185



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>TRPD1_RALSO (Q8XVE7) Anthranilate phosphoribosyltransferase 1 (EC 2.4.2.18)|
          Length = 345

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 111 SLRFLGISYTFCDHHHPKGLDLVPIRAMLSNSKVF 7
           S+  +GI + F  +HHP   ++ PIR  L    +F
Sbjct: 147 SIEAVGIGFMFAPNHHPAMKNVAPIRKELGVRTLF 181


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,648,882
Number of Sequences: 219361
Number of extensions: 1053345
Number of successful extensions: 2277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2277
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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