Clone Information

BLAST Search Result

Clone Name	rbastl26f06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_185527.1\| Oryza sativa (japonica cultivar-group), mRNA	113	5e-22
2	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	113	5e-22
3	gb\|DQ004688.1\| Oryza sativa (indica cultivar-group) putative LON...	113	5e-22
4	dbj\|AP004316.4\| Oryza sativa (japonica cultivar-group) genomic D...	113	5e-22
5	dbj\|AP003816.2\| Oryza sativa (japonica cultivar-group) genomic D...	113	5e-22
6	dbj\|AK068511.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	113	5e-22
7	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	101	2e-18
8	gb\|AC134769.1\| Genomic sequence for Oryza sativa, Nipponbare str...	101	2e-18
9	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
10	gb\|AY183658.1\| Oryza sativa (indica cultivar-group) putative Lon...	101	2e-18
11	gb\|AY109578.1\| Zea mays CL1712_1 mRNA sequence	98	3e-17
12	gb\|U85495.1\|ZMU85495 Zea mays LON2 protease (LON2) mRNA, complet...	98	3e-17
13	gb\|BT017809.1\| Zea mays clone EL01N0507A02.c mRNA sequence	90	7e-15
14	gb\|AY110503.1\| Zea mays CL1712_2 mRNA sequence	90	7e-15
15	ref\|NM_185525.1\| Oryza sativa (japonica cultivar-group), mRNA	56	1e-04
16	gb\|AC155297.2\| Mus musculus BAC clone RP24-238D1 from chromosome...	46	0.100
17	emb\|CT030726.4\| Mouse DNA sequence from clone RP24-465G11 on chr...	46	0.100
18	emb\|AL365230.8\| Human DNA sequence from clone RP11-384G23 on chr...	44	0.39
19	gb\|AC003664.1\|AC003664 Homo sapiens chromosome 17, clone hCIT54K...	44	0.39
20	ref\|XM_632541.1\| Dictyostelium discoideum hypothetical protein (...	42	1.6
21	emb\|BX537109.14\| Zebrafish DNA sequence from clone DKEY-86P22 in...	42	1.6
22	emb\|Z97832.11\|HS329A5 Human DNA sequence from clone RP3-329A5 on...	42	1.6
23	gb\|AC104637.5\| Homo sapiens 3 BAC RP11-387L24 (Roswell Park Canc...	42	1.6
24	gb\|AC011773.9\| Homo sapiens chromosome 8, clone RP11-219B4, comp...	42	1.6
25	gb\|AY692274.1\| Borrelia turicatae P-553 gene, complete cds	42	1.6
26	dbj\|AP004898.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	42	1.6
27	gb\|AE014831.1\| Plasmodium falciparum 3D7 chromosome 10 section 3...	40	6.1
28	gb\|AC119857.10\| Mus musculus chromosome 3, clone RP23-257A18, co...	40	6.1
29	gb\|DQ192535.1\| Zea mays clone v45 genomic sequence	40	6.1
30	gb\|CP000001.1\| Bacillus cereus E33L, complete genome	40	6.1
31	gb\|AC149474.15\| Medicago truncatula clone mth2-122l24, complete ...	40	6.1
32	emb\|AL591468.4\| Human DNA sequence from clone RP11-10J5 on chrom...	40	6.1
33	emb\|X64659.1\|CJINTERFG C.jacchus interferon gene for interferon ...	40	6.1
34	emb\|CR762493.11\| Zebrafish DNA sequence from clone DKEY-228B19 i...	40	6.1
35	emb\|AL671983.18\| Mouse DNA sequence from clone RP23-232B3 on chr...	40	6.1
36	gb\|AC026979.9\| Homo sapiens, clone RP11-51J9, complete sequence	40	6.1
37	gb\|AC079457.14\| Homo sapiens 12 BAC RP11-632M17 (Roswell Park Ca...	40	6.1
38	gb\|AC090820.6\| Homo sapiens chromosome 8, clone CTD-2345M20, com...	40	6.1
39	gb\|AC182812.1\| Gasterosteus aculeatus clone VMRC28-91C14, comple...	40	6.1
40	emb\|BX682234.9\| Zebrafish DNA sequence from clone CH211-193E13, ...	40	6.1
41	gb\|AC104596.4\| Homo sapiens BAC clone RP11-54P19 from 4, complet...	40	6.1
42	gb\|AC073255.6\| Homo sapiens BAC clone RP11-182E7 from 2, complet...	40	6.1
43	gb\|AC012352.7\| Homo sapiens BAC clone RP11-12M21 from 2, complet...	40	6.1
44	gb\|AC109642.4\| Homo sapiens BAC clone RP11-776F5 from 2, complet...	40	6.1
45	gb\|AC155159.2\| Mus musculus BAC clone RP24-482D1 from 18, comple...	40	6.1
46	gb\|AC130103.4\| Rattus norvegicus BAC CH230-41L20 (Children's Ho...	40	6.1
47	emb\|CT033768.1\| Medicago truncatula chromosome 5 clone mte1-72b1...	40	6.1
48	dbj\|D84253.1\|GLGPEF1A Glugea plecoglossi DNA for peptide elongat...	40	6.1
49	dbj\|D32139.1\|GLGEF1A Glugea plecoglossi mRNA for elongation fact...	40	6.1

>ref|NM_185527.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2931

 Score =  113 bits (57), Expect = 5e-22
 Identities = 105/121 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
            |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 2912 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 2853

                                                                        
Query: 367  agaccctctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaat 426
            |||||||| ||||| || |||||||||||||| ||||||||||| || |||||||| |||
Sbjct: 2852 agaccctccttcacattgggagcaagctcatcgaaatcccttttattcgctgctgggaat 2793

             
Query: 427  a 427
            |
Sbjct: 2792 a 2792

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 5e-22
 Identities = 105/121 (86%)
 Strand = Plus / Plus

                                                                            
Query: 307      gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
                |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 29239156 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 29239215

                                                                            
Query: 367      agaccctctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaat 426
                |||||||| ||||| || |||||||||||||| ||||||||||| || |||||||| |||
Sbjct: 29239216 agaccctccttcacattgggagcaagctcatcgaaatcccttttattcgctgctgggaat 29239275

                 
Query: 427      a 427
                |
Sbjct: 29239276 a 29239276



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 385      ggagcaagctcatcaaaatcccttttgtttgctgctggaaatat 428
                |||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 29235663 ggagcaagctcatcgaaatcccttttattcgctgctgggaatat 29235706



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 293      gctagcttgtttctgtctca 312
                ||||||||||||||||||||
Sbjct: 29235600 gctagcttgtttctgtctca 29235619

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>gb|DQ004688.1| Oryza sativa (indica cultivar-group) putative LON3 protease mRNA,
            complete cds
          Length = 3133

 Score =  113 bits (57), Expect = 5e-22
 Identities = 105/121 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
            |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 3035 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 2976

                                                                        
Query: 367  agaccctctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaat 426
            |||||||| ||||| || |||||||||||||| ||||||||||| || |||||||| |||
Sbjct: 2975 agaccctccttcacattgggagcaagctcatcgaaatcccttttattcgctgctgggaat 2916

             
Query: 427  a 427
            |
Sbjct: 2915 a 2915

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>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0597G07
          Length = 152928

 Score =  113 bits (57), Expect = 5e-22
 Identities = 105/121 (86%)
 Strand = Plus / Plus

                                                                         
Query: 307   gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
             |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 27845 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 27904

                                                                         
Query: 367   agaccctctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaat 426
             |||||||| ||||| || |||||||||||||| ||||||||||| || |||||||| |||
Sbjct: 27905 agaccctccttcacattgggagcaagctcatcgaaatcccttttattcgctgctgggaat 27964

              
Query: 427   a 427
             |
Sbjct: 27965 a 27965



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 385   ggagcaagctcatcaaaatcccttttgtttgctgctggaaatat 428
             |||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 24352 ggagcaagctcatcgaaatcccttttattcgctgctgggaatat 24395



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gctagcttgtttctgtctca 312
             ||||||||||||||||||||
Sbjct: 24289 gctagcttgtttctgtctca 24308

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>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1165_F02
          Length = 125993

 Score =  113 bits (57), Expect = 5e-22
 Identities = 105/121 (86%)
 Strand = Plus / Plus

                                                                         
Query: 307   gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
             |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 79230 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 79289

                                                                         
Query: 367   agaccctctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaat 426
             |||||||| ||||| || |||||||||||||| ||||||||||| || |||||||| |||
Sbjct: 79290 agaccctccttcacattgggagcaagctcatcgaaatcccttttattcgctgctgggaat 79349

              
Query: 427   a 427
             |
Sbjct: 79350 a 79350



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 385   ggagcaagctcatcaaaatcccttttgtttgctgctggaaatat 428
             |||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 75737 ggagcaagctcatcgaaatcccttttattcgctgctgggaatat 75780



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gctagcttgtttctgtctca 312
             ||||||||||||||||||||
Sbjct: 75674 gctagcttgtttctgtctca 75693

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>dbj|AK068511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153J24, full
            insert sequence
          Length = 1680

 Score =  113 bits (57), Expect = 5e-22
 Identities = 105/121 (86%)
 Strand = Plus / Minus

                                                                        
Query: 307  gtctcattctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtca 366
            |||||| ||||||||||||  |   |||||||||||||||| |||||||| ||||| |||
Sbjct: 1402 gtctcactctggaaagctatatcaaatatttcattgtatgtatcaacaaaatgaacttca 1343

                                                                        
Query: 367  agaccctctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaat 426
            |||||||| ||||| || |||||||||||||| ||||||||||| || |||||||| |||
Sbjct: 1342 agaccctccttcacattgggagcaagctcatcgaaatcccttttattcgctgctgggaat 1283

             
Query: 427  a 427
            |
Sbjct: 1282 a 1282

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                            
Query: 331      tatatttcattgtatgtgtcaacaaagtgaacgtcaagaccctctttcacgtttggagca 390
                ||||||||| ||||| ||||||||||||| || |||||||| ||||| || || ||||||
Sbjct: 10859598 tatatttcactgtatttgtcaacaaagtggacttcaagaccttcttttacattaggagca 10859657

                                                                   
Query: 391      agctcatcaaaatcccttttgtttgctgctggaaatatgatcatctttatc 441
                ||||| || ||||| ||| |||| |||||||| ||||||||| ||||||||
Sbjct: 10859658 agctcgtcgaaatctcttctgttcgctgctgggaatatgatcgtctttatc 10859708

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>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05,
              from chromosome 3, complete sequence
          Length = 127348

 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Minus

                                                                          
Query: 331    tatatttcattgtatgtgtcaacaaagtgaacgtcaagaccctctttcacgtttggagca 390
              ||||||||| ||||| ||||||||||||| || |||||||| ||||| || || ||||||
Sbjct: 121431 tatatttcactgtatttgtcaacaaagtggacttcaagaccttcttttacattaggagca 121372

                                                                 
Query: 391    agctcatcaaaatcccttttgtttgctgctggaaatatgatcatctttatc 441
              ||||| || ||||| ||| |||| |||||||| ||||||||| ||||||||
Sbjct: 121371 agctcgtcgaaatctcttctgttcgctgctgggaatatgatcgtctttatc 121321

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                            
Query: 331      tatatttcattgtatgtgtcaacaaagtgaacgtcaagaccctctttcacgtttggagca 390
                ||||||||| ||||| ||||||||||||| || |||||||| ||||| || || ||||||
Sbjct: 10857699 tatatttcactgtatttgtcaacaaagtggacttcaagaccttcttttacattaggagca 10857758

                                                                   
Query: 391      agctcatcaaaatcccttttgtttgctgctggaaatatgatcatctttatc 441
                ||||| || ||||| ||| |||| |||||||| ||||||||| ||||||||
Sbjct: 10857759 agctcgtcgaaatctcttctgttcgctgctgggaatatgatcgtctttatc 10857809

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>gb|AY183658.1| Oryza sativa (indica cultivar-group) putative Lon2 protease mRNA,
            complete cds; nuclear gene for mitochondrial product
          Length = 2965

 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Minus

                                                                        
Query: 331  tatatttcattgtatgtgtcaacaaagtgaacgtcaagaccctctttcacgtttggagca 390
            ||||||||| ||||| ||||||||||||| || |||||||| ||||| || || ||||||
Sbjct: 2870 tatatttcactgtatttgtcaacaaagtggacttcaagaccttcttttacattaggagca 2811

                                                               
Query: 391  agctcatcaaaatcccttttgtttgctgctggaaatatgatcatctttatc 441
            ||||| || ||||| ||| |||| |||||||| ||||||||| ||||||||
Sbjct: 2810 agctcgtcgaaatctcttctgttcgctgctgggaatatgatcgtctttatc 2760

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>gb|AY109578.1| Zea mays CL1712_1 mRNA sequence
          Length = 3346

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 100/117 (85%)
 Strand = Plus / Minus

                                                                        
Query: 314  tctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtcaagaccct 373
            ||||||||||||| |  ||||||||| |||||||||||||||| ||||| || || || |
Sbjct: 2922 tctggaaagctaaatcatatatttcactgtatgtgtcaacaaaatgaacttcgaggcctt 2863

                                                                     
Query: 374  ctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaatatga 430
            | ||||| || | |||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct: 2862 ccttcacattagaagcaagctcatcgaaatcccttttattcgctgccggaaatatga 2806

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>gb|U85495.1|ZMU85495 Zea mays LON2 protease (LON2) mRNA, complete cds
          Length = 3411

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 100/117 (85%)
 Strand = Plus / Minus

                                                                        
Query: 314  tctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtcaagaccct 373
            ||||||||||||| |  ||||||||| |||||||||||||||| ||||| || || || |
Sbjct: 2922 tctggaaagctaaatcatatatttcactgtatgtgtcaacaaaatgaacttcgaggcctt 2863

                                                                     
Query: 374  ctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaatatga 430
            | ||||| || | |||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct: 2862 ccttcacattagaagcaagctcatcgaaatcccttttattcgctgccggaaatatga 2806

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>gb|BT017809.1| Zea mays clone EL01N0507A02.c mRNA sequence
          Length = 724

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 108/129 (83%)
 Strand = Plus / Minus

                                                                       
Query: 314 tctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtcaagaccct 373
           |||||||||| || |  ||||||||| |||||||||||||||| ||||| || || || |
Sbjct: 479 tctggaaagccaaatcatatatttcactgtatgtgtcaacaaaatgaacttccagtcctt 420

                                                                       
Query: 374 ctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaatatgatca 433
           | ||||| || | ||||||||| ||||| |||||||| || ||||| |||||||||| | 
Sbjct: 419 ccttcacattagaagcaagctcgtcaaagtcccttttattcgctgccggaaatatgagcg 360

                    
Query: 434 tctttatcg 442
           |||||||||
Sbjct: 359 tctttatcg 351

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>gb|AY110503.1| Zea mays CL1712_2 mRNA sequence
          Length = 621

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 108/129 (83%)
 Strand = Plus / Minus

                                                                       
Query: 314 tctggaaagctaacttgtatatttcattgtatgtgtcaacaaagtgaacgtcaagaccct 373
           |||||||||| || |  ||||||||| |||||||||||||||| ||||| || || || |
Sbjct: 424 tctggaaagccaaatcatatatttcactgtatgtgtcaacaaaatgaacttccagtcctt 365

                                                                       
Query: 374 ctttcacgtttggagcaagctcatcaaaatcccttttgtttgctgctggaaatatgatca 433
           | ||||| || | ||||||||| ||||| |||||||| || ||||| |||||||||| | 
Sbjct: 364 ccttcacattagaagcaagctcgtcaaagtcccttttattcgctgccggaaatatgagcg 305

                    
Query: 434 tctttatcg 442
           |||||||||
Sbjct: 304 tctttatcg 296

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>ref|NM_185525.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 612

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 385 ggagcaagctcatcaaaatcccttttgtttgctgctggaaatat 428
           |||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 599 ggagcaagctcatcgaaatcccttttattcgctgctgggaatat 556

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>gb|AC155297.2| Mus musculus BAC clone RP24-238D1 from chromosome 13, complete sequence
          Length = 174487

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 165   aaaaaacaatcattacaacaaaaagtt 191
             |||||||||| ||||||||||||||||
Sbjct: 13382 aaaaaacaataattacaacaaaaagtt 13408

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>emb|CT030726.4| Mouse DNA sequence from clone RP24-465G11 on chromosome 13, complete
             sequence
          Length = 156720

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 165   aaaaaacaatcattacaacaaaaagtt 191
             |||||||||| ||||||||||||||||
Sbjct: 28959 aaaaaacaataattacaacaaaaagtt 28933

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>emb|AL365230.8| Human DNA sequence from clone RP11-384G23 on chromosome 13, complete
             sequence
          Length = 99257

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 332   atatttcattgtatgtgtcaac 353
             ||||||||||||||||||||||
Sbjct: 10748 atatttcattgtatgtgtcaac 10769

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>gb|AC003664.1|AC003664 Homo sapiens chromosome 17, clone hCIT54K19, complete sequence
          Length = 202233

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 206    aaagaatggcctagctgcaaac 227
              ||||||||||||||||||||||
Sbjct: 162485 aaagaatggcctagctgcaaac 162464

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>ref|XM_632541.1| Dictyostelium discoideum hypothetical protein (DDB0187106), partial
           mRNA
          Length = 2991

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 aacaatcattacaacaaaaag 189
           |||||||||||||||||||||
Sbjct: 662 aacaatcattacaacaaaaag 682

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>emb|BX537109.14| Zebrafish DNA sequence from clone DKEY-86P22 in linkage group 14,
             complete sequence
          Length = 231134

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    aaaagaactaagcaaaacttg 44
             |||||||||||||||||||||
Sbjct: 44485 aaaagaactaagcaaaacttg 44505

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>emb|Z97832.11|HS329A5 Human DNA sequence from clone RP3-329A5 on chromosome 6p21.1-21.33
              Contains the gene for a novel EGF-like and CUB domain
              protein similar to mouse CUB domain EGF-like signal peptide
              1 (Scube1) and mouse and human CEGP1, the ZNF76 gene for
              zinc finger protein 76 (expressed in testis), the DEF6 gene
              for differentially expressed in FDCP 6 homolog (mouse), a
              ribosomal protein L35A (RPL35A) pseudogene and three CpG
              islands, complete sequence
          Length = 117026

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 170    acaatcattacaacaaaaagttact 194
              ||||| |||||||||||||||||||
Sbjct: 110235 acaattattacaacaaaaagttact 110211

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>gb|AC104637.5| Homo sapiens 3 BAC RP11-387L24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 99960

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 170   acaatcattacaacaaaaagt 190
             |||||||||||||||||||||
Sbjct: 93599 acaatcattacaacaaaaagt 93619

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>gb|AC011773.9| Homo sapiens chromosome 8, clone RP11-219B4, complete sequence
          Length = 160283

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    ctaagcaaaacttgtacattt 51
             |||||||||||||||||||||
Sbjct: 44156 ctaagcaaaacttgtacattt 44176

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>gb|AY692274.1| Borrelia turicatae P-553 gene, complete cds
          Length = 2127

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 165 aaaaaacaatcattacaacaa 185
           |||||||||||||||||||||
Sbjct: 573 aaaaaacaatcattacaacaa 593

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>dbj|AP004898.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT01P23, TM0047b,
           complete sequence
          Length = 69411

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 118 attctcgtcaaaatttcctta 138
           |||||||||||||||||||||
Sbjct: 639 attctcgtcaaaatttcctta 659

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>gb|AE014831.1| Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete
              sequence
          Length = 250195

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aaaaacaatcattacaacaa 185
              ||||||||||||||||||||
Sbjct: 213590 aaaaacaatcattacaacaa 213571



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aaaaacaatcattacaacaa 185
              ||||||||||||||||||||
Sbjct: 213566 aaaaacaatcattacaacaa 213547



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aaaaacaatcattacaacaa 185
              ||||||||||||||||||||
Sbjct: 213542 aaaaacaatcattacaacaa 213523

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>gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, complete sequence
          Length = 152106

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   tcaaaatttccttaaacata 144
             ||||||||||||||||||||
Sbjct: 64101 tcaaaatttccttaaacata 64120

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>gb|DQ192535.1| Zea mays clone v45 genomic sequence
          Length = 294

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 387 agcaagctcatcaaaatccctttt 410
           |||||||||||| |||||||||||
Sbjct: 32  agcaagctcatcgaaatccctttt 9

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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     aaaacaatcattacaacaaa 186
               ||||||||||||||||||||
Sbjct: 3579008 aaaacaatcattacaacaaa 3578989

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>gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete sequence
          Length = 129008

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 349   tcaacaaagtgaacgtcaagaccctctttcacgtttggagcaagctcatcaaaatc 404
             ||||||||||| || || ||||| ||||| || || || || ||||||||||||||
Sbjct: 83992 tcaacaaagtgcacttcgagaccttcttttacattaggtgctagctcatcaaaatc 84047

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>emb|AL591468.4| Human DNA sequence from clone RP11-10J5 on chromosome 6 Contains a
             novel gene and the 5' part of a novel gene, complete
             sequence
          Length = 55261

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   ttgtatatttcattgtatgt 347
             ||||||||||||||||||||
Sbjct: 13184 ttgtatatttcattgtatgt 13203

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>emb|X64659.1|CJINTERFG C.jacchus interferon gene for interferon gamma
          Length = 8527

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 324  taacttgtatatttcattgt 343
            ||||||||||||||||||||
Sbjct: 2783 taacttgtatatttcattgt 2764

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>emb|CR762493.11| Zebrafish DNA sequence from clone DKEY-228B19 in linkage group 13,
              complete sequence
          Length = 168643

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    tcatcaaaatcccttttgtt 413
              ||||||||||||||||||||
Sbjct: 100017 tcatcaaaatcccttttgtt 100036

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>emb|AL671983.18| Mouse DNA sequence from clone RP23-232B3 on chromosome X, complete
             sequence
          Length = 176577

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    aaatcattaaaagaactaag 35
             ||||||||||||||||||||
Sbjct: 24411 aaatcattaaaagaactaag 24392

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>gb|AC026979.9| Homo sapiens, clone RP11-51J9, complete sequence
          Length = 130318

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    ttgtatatttcattgtatgt 347
              ||||||||||||||||||||
Sbjct: 110326 ttgtatatttcattgtatgt 110345

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>gb|AC079457.14| Homo sapiens 12 BAC RP11-632M17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 120449

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 400   aaatcccttttgtttgctgctgga 423
             ||||||||||| ||||||||||||
Sbjct: 17977 aaatcccttttttttgctgctgga 17954

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>gb|AC090820.6| Homo sapiens chromosome 8, clone CTD-2345M20, complete sequence
          Length = 138021

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   ttgtatatttcattgtatgt 347
             ||||||||||||||||||||
Sbjct: 27939 ttgtatatttcattgtatgt 27958

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>gb|AC182812.1| Gasterosteus aculeatus clone VMRC28-91C14, complete sequence
          Length = 136032

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   tcccttttgtttgctgctgg 422
             ||||||||||||||||||||
Sbjct: 26503 tcccttttgtttgctgctgg 26522

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>emb|BX682234.9| Zebrafish DNA sequence from clone CH211-193E13, complete sequence
          Length = 165319

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   caatcattacaacaaaaagt 190
             ||||||||||||||||||||
Sbjct: 33698 caatcattacaacaaaaagt 33717

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>gb|AC104596.4| Homo sapiens BAC clone RP11-54P19 from 4, complete sequence
          Length = 168591

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    taaaatcattaaaagaacta 33
             ||||||||||||||||||||
Sbjct: 50249 taaaatcattaaaagaacta 50268

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>gb|AC073255.6| Homo sapiens BAC clone RP11-182E7 from 2, complete sequence
          Length = 183720

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   tttgtaacaaacctctagtt 76
            ||||||||||||||||||||
Sbjct: 1087 tttgtaacaaacctctagtt 1068

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>gb|AC012352.7| Homo sapiens BAC clone RP11-12M21 from 2, complete sequence
          Length = 168142

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   atcttgcaaagaatggccta 218
             ||||||||||||||||||||
Sbjct: 13355 atcttgcaaagaatggccta 13336

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>gb|AC109642.4| Homo sapiens BAC clone RP11-776F5 from 2, complete sequence
          Length = 74821

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tttgtaacaaacctctagtt 76
             ||||||||||||||||||||
Sbjct: 73908 tttgtaacaaacctctagtt 73889

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>gb|AC155159.2| Mus musculus BAC clone RP24-482D1 from 18, complete sequence
          Length = 190752

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    tgtttctgtctcattctgga 319
              ||||||||||||||||||||
Sbjct: 106025 tgtttctgtctcattctgga 106044

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>gb|AC130103.4| Rattus norvegicus  BAC CH230-41L20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 224716

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    gaaagctaacttgtatattt 337
              ||||||||||||||||||||
Sbjct: 133349 gaaagctaacttgtatattt 133330

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>emb|CT033768.1| Medicago truncatula chromosome 5 clone mte1-72b19, COMPLETE SEQUENCE
          Length = 121254

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   aaaaaacaatcattacaacaaaaa 188
             |||||||||| |||||||||||||
Sbjct: 51953 aaaaaacaataattacaacaaaaa 51976

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>dbj|D84253.1|GLGPEF1A Glugea plecoglossi DNA for peptide elongation factor 1 alpha,
           complete cds
          Length = 2073

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 attgtatgtgtcaacaaagt 358
           ||||||||||||||||||||
Sbjct: 863 attgtatgtgtcaacaaagt 882

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>dbj|D32139.1|GLGEF1A Glugea plecoglossi mRNA for elongation factor 1 alpha (EF-1 alpha),
           partial cds
          Length = 1359

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 attgtatgtgtcaacaaagt 358
           ||||||||||||||||||||
Sbjct: 382 attgtatgtgtcaacaaagt 401


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,431,499
Number of Sequences: 3902068
Number of extensions: 5431499
Number of successful extensions: 110179
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109910
Number of HSP's gapped (non-prelim): 263
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result