ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YB53_YEAST (P38308) Protein YBR203W 30 1.9
2ARI2_CAEEL (Q22431) Probable protein ariadne-2 (Ari-2) 29 2.5
3YOD1_SCHPO (Q9UUD8) Probable peptidase C18A7.01 (EC 3.4.-.-) 28 7.3
4HIS7_ERWCT (Q6D409) Histidine biosynthesis bifunctional protein ... 28 7.3
5GLUP_HELPY (O25788) Putative glucose/galactose transporter 27 9.5
6GLUP_HELPJ (Q9ZK41) Putative glucose/galactose transporter 27 9.5
7RBCC1_HUMAN (Q8TDY2) RB1-inducible coiled-coil protein 1 27 9.5

>YB53_YEAST (P38308) Protein YBR203W|
          Length = 924

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 25/75 (33%), Positives = 34/75 (45%)
 Frame = +1

Query: 4   SSLQHVEQFVTSGIICLETSTNKYMAIVLKLKSIYNNICIKENYEILLTDDQTAAHGHAH 183
           +S   V QFVTS  + L      Y+  VL L  +   I  +++ +    DD    H   H
Sbjct: 236 TSTYRVAQFVTS--LRLHPDNGAYVK-VLDLSHLKPGIIGQDSKDSQGLDDD--GHSRRH 290

Query: 184 TRRIERSTQLSYNVP 228
            RR  RST  S N+P
Sbjct: 291 RRRRRRSTNTSLNLP 305



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>ARI2_CAEEL (Q22431) Probable protein ariadne-2 (Ari-2)|
          Length = 482

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +1

Query: 16  HVEQFVTSGII----CLETSTNKYMAIVLKLKSIYNNICIKENYEILLTDDQTAAHGH 177
           HVE  ++ G+     C+E+    Y      L  I N+  IK  YE  L  D   +H H
Sbjct: 157 HVESRLSEGVASRIECMESECEVYAPSEFVLSIIKNSPVIKLKYERFLLRDMVNSHPH 214



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>YOD1_SCHPO (Q9UUD8) Probable peptidase C18A7.01 (EC 3.4.-.-)|
          Length = 451

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 4   SSLQHVEQFVTSGIICLETSTNKYMAIVLKLKSIYNNICIKENYEILLTDDQTAAHGHAH 183
           ++++ V+  +  GI      T K +A V+ +  +Y  + ++E+  +L  +     HG   
Sbjct: 239 AAIRSVQPCIKPGI------TEKELAEVINMLFVYGGLPVQESPIVLFGERAAMPHGGPS 292

Query: 184 TRRIERS 204
            RR+++S
Sbjct: 293 NRRLKKS 299



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>HIS7_ERWCT (Q6D409) Histidine biosynthesis bifunctional protein hisB|
           [Includes: Histidinol-phosphatase (EC 3.1.3.15);
           Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
           (IGPD)]
          Length = 355

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 145 LTDDQTAAHGHAHTRRIERSTQLSYNV 225
           +TD  T  + HAH  R+ R T +  NV
Sbjct: 158 ITDQLTKRNRHAHVNRVTRETAIDVNV 184



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>GLUP_HELPY (O25788) Putative glucose/galactose transporter|
          Length = 407

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 31  VTSGIICLETSTNKYMAIVLKLKSIYNNICIK 126
           + SGI+CL+T+ N ++ ++ K K   N + ++
Sbjct: 109 LASGIVCLQTAGNPFVTLLSKGKEARNLVLVQ 140



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>GLUP_HELPJ (Q9ZK41) Putative glucose/galactose transporter|
          Length = 407

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 31  VTSGIICLETSTNKYMAIVLKLKSIYNNICIK 126
           + SGI+CL+T+ N ++ ++ K K   N + ++
Sbjct: 109 LASGIVCLQTAGNPFVTLLSKGKEARNLVLVQ 140



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>RBCC1_HUMAN (Q8TDY2) RB1-inducible coiled-coil protein 1|
          Length = 1594

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 52  LETSTNKYMAIVLKLKSIYNNICIK-ENYEILLTDDQTAAHGHAHTRRIERSTQLSY 219
           LE  +N Y  ++ K +SIY+N     E+ ++ LT   TA    A    +E  T+ SY
Sbjct: 157 LEDCSNSYQKLLFKFESIYSNYLQSIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSY 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,469,810
Number of Sequences: 219361
Number of extensions: 679281
Number of successful extensions: 1365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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