Clone Name | rbastl26f01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_479924.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3034 Score = 287 bits (145), Expect = 2e-74 Identities = 214/237 (90%) Strand = Plus / Minus Query: 217 cttcctactgggtactgttcctaacatgaacaagattcctcagctcctcaaatgcatcca 276 ||||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||| Sbjct: 2809 cttcctactgggtgctgtttctgacatgcacaagattcctcagctcttcaaatgcatcca 2750 Query: 277 tggtctctgtgtcaaatcctccggcaaactgatgaattctgaaggcaaatctcacagcct 336 ||||||||| || ||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct: 2749 tggtctctggatcgaatcccccagcaaactgatgcattctgaaggcaaatctcacagcct 2690 Query: 337 gaagcagcatgtactccagagctaggtccttgttcagaggtcccatgtactgaagctcca 396 |||| ||||| ||||||| |||| | || |||||||||||||||||||| ||||| |||| Sbjct: 2689 gaagtagcatatactccaaagctggatctttgttcagaggtcccatgtattgaagttcca 2630 Query: 397 tagcaactcttttcatgtacatatttgctagtttcacagaagcaaattttatcttgc 453 |||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||| Sbjct: 2629 tagcaactcttttcatgtacatctttgctaatttgacagaagaaaattttatcttgc 2573
>dbj|AK102166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086H09, full insert sequence Length = 3034 Score = 287 bits (145), Expect = 2e-74 Identities = 214/237 (90%) Strand = Plus / Minus Query: 217 cttcctactgggtactgttcctaacatgaacaagattcctcagctcctcaaatgcatcca 276 ||||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||| Sbjct: 2809 cttcctactgggtgctgtttctgacatgcacaagattcctcagctcttcaaatgcatcca 2750 Query: 277 tggtctctgtgtcaaatcctccggcaaactgatgaattctgaaggcaaatctcacagcct 336 ||||||||| || ||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct: 2749 tggtctctggatcgaatcccccagcaaactgatgcattctgaaggcaaatctcacagcct 2690 Query: 337 gaagcagcatgtactccagagctaggtccttgttcagaggtcccatgtactgaagctcca 396 |||| ||||| ||||||| |||| | || |||||||||||||||||||| ||||| |||| Sbjct: 2689 gaagtagcatatactccaaagctggatctttgttcagaggtcccatgtattgaagttcca 2630 Query: 397 tagcaactcttttcatgtacatatttgctagtttcacagaagcaaattttatcttgc 453 |||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||| Sbjct: 2629 tagcaactcttttcatgtacatctttgctaatttgacagaagaaaattttatcttgc 2573
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 186 bits (94), Expect = 4e-44 Identities = 133/146 (91%) Strand = Plus / Plus Query: 305 ctgatgaattctgaaggcaaatctcacagcctgaagcagcatgtactccagagctaggtc 364 |||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||| | || Sbjct: 1647583 ctgatgcattctgaaggcaaatctcacagcctgaagtagcatatactccaaagctggatc 1647642 Query: 365 cttgttcagaggtcccatgtactgaagctccatagcaactcttttcatgtacatatttgc 424 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 1647643 tttgttcagaggtcccatgtattgaagttccatagcaactcttttcatgtacatctttgc 1647702 Query: 425 tagtttcacagaagcaaattttatct 450 || ||| ||||||| ||||||||||| Sbjct: 1647703 taatttgacagaagaaaattttatct 1647728 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 217 cttcctactgggtactgttcctaacatgaacaagattcctcagctcctcaaatgcatcca 276 ||||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||| Sbjct: 1647164 cttcctactgggtgctgtttctgacatgcacaagattcctcagctcttcaaatgcatcca 1647223 Query: 277 tggtctctgtgtcaaatcctccggcaaactg 307 ||||||||| || ||||| || |||||||| Sbjct: 1647224 tggtctctggatcgaatcccccagcaaactg 1647254 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 caaactgaaaatatatagcttaca 25 |||||| ||||||||||||||||| Sbjct: 26842571 caaacttaaaatatatagcttaca 26842548
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 186 bits (94), Expect = 4e-44 Identities = 133/146 (91%) Strand = Plus / Plus Query: 305 ctgatgaattctgaaggcaaatctcacagcctgaagcagcatgtactccagagctaggtc 364 |||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||| | || Sbjct: 47083 ctgatgcattctgaaggcaaatctcacagcctgaagtagcatatactccaaagctggatc 47142 Query: 365 cttgttcagaggtcccatgtactgaagctccatagcaactcttttcatgtacatatttgc 424 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 47143 tttgttcagaggtcccatgtattgaagttccatagcaactcttttcatgtacatctttgc 47202 Query: 425 tagtttcacagaagcaaattttatct 450 || ||| ||||||| ||||||||||| Sbjct: 47203 taatttgacagaagaaaattttatct 47228 Score = 101 bits (51), Expect = 2e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 217 cttcctactgggtactgttcctaacatgaacaagattcctcagctcctcaaatgcatcca 276 ||||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||| Sbjct: 46664 cttcctactgggtgctgtttctgacatgcacaagattcctcagctcttcaaatgcatcca 46723 Query: 277 tggtctctgtgtcaaatcctccggcaaactg 307 ||||||||| || ||||| || |||||||| Sbjct: 46724 tggtctctggatcgaatcccccagcaaactg 46754
>dbj|AK099132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051M04, full insert sequence Length = 3065 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 287 gtcaaatcctccggcaaactgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||| ||||||||||||||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 2803 gtcaaagcctccggcaaactgatgaactcggaaagcaaatctcacaccctgaagaagca 2745
>dbj|AK072914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150I16, full insert sequence Length = 3183 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 287 gtcaaatcctccggcaaactgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||| ||||||||||||||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 2918 gtcaaagcctccggcaaactgatgaactcggaaagcaaatctcacaccctgaagaagca 2860
>dbj|AK062121.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D01, full insert sequence Length = 1478 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 287 gtcaaatcctccggcaaactgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||| ||||||||||||||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 1216 gtcaaagcctccggcaaactgatgaactcggaaagcaaatctcacaccctgaagaagca 1158
>ref|NM_117970.3| Arabidopsis thaliana unknown protein AT4G18570 mRNA, complete cds Length = 2309 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 258 agctcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactgatgaa 312 ||||| |||||||| | ||| || |||| ||||||||||||||||||||||||| Sbjct: 2065 agctcttcaaatgccttcattgtttctgcatcaaatcctccggcaaactgatgaa 2011
>gb|AY128285.1| Arabidopsis thaliana AT4g18560/F28J12_220 mRNA, complete cds Length = 2134 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 258 agctcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactgatgaa 312 ||||| |||||||| | ||| || |||| ||||||||||||||||||||||||| Sbjct: 1890 agctcttcaaatgccttcattgtttctgcatcaaatcctccggcaaactgatgaa 1836
>emb|BX826449.1|CNS0A49I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2022 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 258 agctcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactgatgaa 312 ||||| |||||||| | ||| || |||| ||||||||||||||||||||||||| Sbjct: 1906 agctcttcaaatgccttcattgtttctgcatcaaatcctccggcaaactgatgaa 1852
>gb|BT004523.1| Arabidopsis thaliana At4g18560/F28J12_220 gene, complete cds Length = 1929 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 258 agctcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactgatgaa 312 ||||| |||||||| | ||| || |||| ||||||||||||||||||||||||| Sbjct: 1844 agctcttcaaatgccttcattgtttctgcatcaaatcctccggcaaactgatgaa 1790
>gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, complete sequence Length = 148552 Score = 46.1 bits (23), Expect = 0.100 Identities = 41/47 (87%) Strand = Plus / Minus Query: 261 tcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactg 307 ||||||||||||| ||| || |||| ||||||||||| |||||||| Sbjct: 59489 tcctcaaatgcatgcattgtttctgcatcaaatcctccagcaaactg 59443
>gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, complete sequence Length = 106128 Score = 46.1 bits (23), Expect = 0.100 Identities = 41/47 (87%) Strand = Plus / Minus Query: 261 tcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactg 307 ||||||||||||| ||| || |||| ||||||||||| |||||||| Sbjct: 57458 tcctcaaatgcatgcattgtttctgcatcaaatcctccagcaaactg 57412
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence Length = 152544 Score = 46.1 bits (23), Expect = 0.100 Identities = 41/47 (87%) Strand = Plus / Plus Query: 261 tcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactg 307 ||||||||||||| ||| || |||| ||||||||||| |||||||| Sbjct: 41452 tcctcaaatgcatgcattgtttctgcatcaaatcctccagcaaactg 41498
>gb|AC122746.7| Mus musculus chromosome 17, clone RP23-144A20, complete sequence Length = 218858 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 107 acactacatacatacacaccaac 129 ||||||||||||||||||||||| Sbjct: 191490 acactacatacatacacaccaac 191512
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49 Length = 199075 Score = 46.1 bits (23), Expect = 0.100 Identities = 44/51 (86%) Strand = Plus / Minus Query: 258 agctcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactga 308 ||||| |||||||| | ||| || |||| ||||||||||||||||||||| Sbjct: 12587 agctcttcaaatgccttcattgtttctgcatcaaatcctccggcaaactga 12537
>emb|AL021710.1|ATF28J12 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project) Length = 110102 Score = 46.1 bits (23), Expect = 0.100 Identities = 44/51 (86%) Strand = Plus / Minus Query: 258 agctcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactga 308 ||||| |||||||| | ||| || |||| ||||||||||||||||||||| Sbjct: 93765 agctcttcaaatgccttcattgtttctgcatcaaatcctccggcaaactga 93715
>gb|AC155242.2| Mus musculus BAC clone RP24-496G24 from chromosome 17, complete sequence Length = 132408 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 107 acactacatacatacacaccaac 129 ||||||||||||||||||||||| Sbjct: 131698 acactacatacatacacaccaac 131676
>gb|AY107994.1| Zea mays PCO117356 mRNA sequence Length = 947 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 311 aattctgaaggcaaatctcacag 333 ||||||||||||||||||||||| Sbjct: 246 aattctgaaggcaaatctcacag 224
>ref|NM_113468.3| Arabidopsis thaliana CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) AT3G25690 (CHUP1) mRNA, complete cds Length = 3379 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Minus Query: 261 tcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactgatg 310 ||||||||||| | |||| |||||| ||||| ||||| ||||||||||| Sbjct: 3152 tcctcaaatgctttcatgctctctgcatcaaaccctccagcaaactgatg 3103
>gb|AC068066.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-414I9, complete sequence Length = 184879 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 104 aatacactacatacatacacac 125 |||||||||||||||||||||| Sbjct: 106438 aatacactacatacatacacac 106417
>gb|AC121497.15| Mus musculus chromosome 6, clone RP23-2M23, complete sequence Length = 231059 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 aatacactacatacatacacac 125 |||||||||||||||||||||| Sbjct: 227407 aatacactacatacatacacac 227428
>dbj|AB087408.1| Arabidopsis thaliana CHUP1 mRNA for actin binding protein, complete cds Length = 3320 Score = 44.1 bits (22), Expect = 0.39 Identities = 43/50 (86%) Strand = Plus / Minus Query: 261 tcctcaaatgcatccatggtctctgtgtcaaatcctccggcaaactgatg 310 ||||||||||| | |||| |||||| ||||| ||||| ||||||||||| Sbjct: 3152 tcctcaaatgctttcatgctctctgcatcaaaccctccagcaaactgatg 3103
>gb|AC102914.9| Mus musculus chromosome 15, clone RP24-274M4, complete sequence Length = 185807 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 353 cagagctaggtccttgttcag 373 ||||||||||||||||||||| Sbjct: 94656 cagagctaggtccttgttcag 94636
>gb|AC161193.3| Mus musculus chromosome 8, clone RP23-308L22, complete sequence Length = 177860 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 atacactacatacatacacac 125 ||||||||||||||||||||| Sbjct: 83304 atacactacatacatacacac 83324
>gb|AF384675.1| Mus musculus FGF15 (Fgf15) gene, complete cds; BC1 scRNA gene, complete sequence; hypothetical protein and cyclin D1 (Ccnd1) genes, complete cds Length = 154480 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 91073 acactacatacatacacacca 91093
>gb|AC112964.8| Mus musculus chromosome 8, clone RP24-82M4, complete sequence Length = 193076 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 atacactacatacatacacac 125 ||||||||||||||||||||| Sbjct: 135267 atacactacatacatacacac 135287
>gb|AC166079.2| Mus musculus BAC clone RP23-51L15 from chromosome 7, complete sequence Length = 193749 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 127812 acactacatacatacacacca 127792
>gb|AC142211.3| Mus musculus BAC clone RP24-501B23 from chromosome 8, complete sequence Length = 175636 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 45282 acactacatacatacacacca 45262
>gb|AC140471.2| Mus musculus BAC clone RP24-400H5 from chromosome 19, complete sequence Length = 185153 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 atacactacatacatacacac 125 ||||||||||||||||||||| Sbjct: 125725 atacactacatacatacacac 125705
>gb|AC127573.4| Mus musculus BAC clone RP24-231H7 from chromosome 9, complete sequence Length = 148263 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 91277 acactacatacatacacacca 91297
>gb|AC123804.3| Mus musculus BAC clone RP24-140B5 from chromosome 7, complete sequence Length = 145046 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 134902 acactacatacatacacacca 134882
>gb|AC125354.4| Mus musculus BAC clone RP23-302B8 from 8, complete sequence Length = 159941 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 atacactacatacatacacac 125 ||||||||||||||||||||| Sbjct: 109170 atacactacatacatacacac 109150
>emb|AL022153.1|HS23K20 Human DNA sequence from clone RP1-23K20 on chromosome Xq25-26.2 Contains the 5' end of the COVA1 gene for cytosolic ovarian carcinoma antigen 1, the 3' end of a novel gene and a CpG island, complete sequence Length = 126352 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 tcttttcatgtacatatttgc 424 ||||||||||||||||||||| Sbjct: 122159 tcttttcatgtacatatttgc 122179
>gb|AC165271.2| Mus musculus BAC clone RP24-424G16 from chromosome 16, complete sequence Length = 165496 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 26015 acactacatacatacacacca 26035
>gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosome 7, complete sequence Length = 221679 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 40030 acactacatacatacacacca 40010
>gb|AC099818.2| Homo sapiens chromosome 8, clone RP11-99I9, complete sequence Length = 160046 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 tcttttcatgtacatatttgc 424 ||||||||||||||||||||| Sbjct: 6674 tcttttcatgtacatatttgc 6654
>gb|AC021733.12| Homo sapiens chromosome 8, clone RP11-775B15, complete sequence Length = 158341 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 tcttttcatgtacatatttgc 424 ||||||||||||||||||||| Sbjct: 147151 tcttttcatgtacatatttgc 147131
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 305 ctgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 274026 ctgatgaactcggaaagcaaatctcacaccctgaagaagca 274066
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 305 ctgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 256287 ctgatgaactcggaaagcaaatctcacaccctgaagaagca 256327
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence Length = 229073 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 aatacactacatacatacaca 124 ||||||||||||||||||||| Sbjct: 25445 aatacactacatacatacaca 25465
>gb|AC123621.10| Mus musculus chromosome 19, clone RP23-74D13, complete sequence Length = 197720 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 atacactacatacatacacac 125 ||||||||||||||||||||| Sbjct: 196350 atacactacatacatacacac 196370
>gb|AC166165.3| Mus musculus BAC clone RP23-381I17 from chromosome 10, complete sequence Length = 217425 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 37516 acactacatacatacacacca 37536
>gb|AC132232.6| Mus musculus BAC clone RP24-489N16 from chromosome 10, complete sequence Length = 166451 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 5780 acactacatacatacacacca 5760
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 305 ctgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 256287 ctgatgaactcggaaagcaaatctcacaccctgaagaagca 256327
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 305 ctgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 274026 ctgatgaactcggaaagcaaatctcacaccctgaagaagca 274066
>dbj|AP003153.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-485C23, complete sequences Length = 156444 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 120791 acactacatacatacacacca 120771
>dbj|AP003152.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-356B22, complete sequences Length = 190116 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 43311 acactacatacatacacacca 43291
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 305 ctgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 48706 ctgatgaactcggaaagcaaatctcacaccctgaagaagca 48666
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 305 ctgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 7077 ctgatgaactcggaaagcaaatctcacaccctgaagaagca 7117
>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 96667 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 305 ctgatgaattctgaaggcaaatctcacagcctgaagcagca 345 |||||||| || ||| |||||||||||| ||||||| |||| Sbjct: 1230 ctgatgaactcggaaagcaaatctcacaccctgaagaagca 1190
>emb|BX248320.3| Zebrafish DNA sequence from clone CH211-146A1 in linkage group 18, complete sequence Length = 54960 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 actcaaatacactacatacat 119 ||||||||||||||||||||| Sbjct: 11078 actcaaatacactacatacat 11058
>gb|AC165248.2| Mus musculus BAC clone RP24-219D2 from chromosome 16, complete sequence Length = 190373 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 166973 acactacatacatacacacca 166993
>gb|AC163288.4| Mus musculus BAC clone RP23-279M5 from chromosome 8, complete sequence Length = 222867 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 acactacatacatacacacca 127 ||||||||||||||||||||| Sbjct: 150225 acactacatacatacacacca 150205
>gb|AC114653.11| Mus musculus chromosome 5, clone RP24-158G19, complete sequence Length = 164313 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 atacactacatacatacaca 124 |||||||||||||||||||| Sbjct: 27005 atacactacatacatacaca 26986
>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete sequence Length = 191358 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tacactacatacatacacac 125 |||||||||||||||||||| Sbjct: 104124 tacactacatacatacacac 104105
>gb|AC129216.4| Mus musculus BAC clone RP24-446C11 from chromosome 14, complete sequence Length = 190338 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 atacactacatacatacaca 124 |||||||||||||||||||| Sbjct: 119024 atacactacatacatacaca 119005
>gb|AC122356.4| Mus musculus BAC clone RP23-401P15 from chromosome 14, complete sequence Length = 206660 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 atacactacatacatacaca 124 |||||||||||||||||||| Sbjct: 27347 atacactacatacatacaca 27328
>ref|XM_814945.1| Trypanosoma cruzi strain CL Brener dynein heavy chain (Tc00.1047053506679.110) partial mRNA Length = 12480 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 agctcctcaaatgcatccatggtc 281 |||||||| ||||||||||||||| Sbjct: 1364 agctcctcgaatgcatccatggtc 1341
>gb|AC116592.5| Mus musculus BAC clone RP24-90K3 from 2, complete sequence Length = 238657 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 gctcctcaaatgcatccatg 278 |||||||||||||||||||| Sbjct: 154845 gctcctcaaatgcatccatg 154826
>gb|AC104872.8| Mus musculus chromosome 12, clone RP23-360C2, complete sequence Length = 196850 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 tagtttcacagaagcaaattttat 448 ||||| |||||||||||||||||| Sbjct: 149673 tagttgcacagaagcaaattttat 149696
>gb|AC005084.2| Homo sapiens BAC clone CTA-298G8 from 7, complete sequence Length = 177901 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 cttttcatgtacatatttgc 424 |||||||||||||||||||| Sbjct: 155627 cttttcatgtacatatttgc 155646
>emb|AL360297.12| Human DNA sequence from clone RP11-386O9 on chromosome 1 Contains two novel genes, complete sequence Length = 169881 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 cttttcatgtacatatttgc 424 |||||||||||||||||||| Sbjct: 35199 cttttcatgtacatatttgc 35218
>emb|AL122004.17|HSJ678E16 Human DNA sequence from clone RP4-678E16 on chromosome 1p32.3-34.2 Contains the 3' end of the gene for a novel protein (FLJ31862, FLJ22091, FLJ10597), the gene for a novel DUF829 domain-containing protein, two novel genes and four CpG islands, complete sequence Length = 107037 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 acatacatacacaccaacct 131 |||||||||||||||||||| Sbjct: 57402 acatacatacacaccaacct 57383
>gb|AC163438.3| Mus musculus chromosome 8, clone RP23-278M23, complete sequence Length = 186102 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 407 tttcatgtacatatttgctagttt 430 ||||||||||||||||||| |||| Sbjct: 109885 tttcatgtacatatttgcttgttt 109862
>gb|AF155220.1| Onchocerca volvulus fructose 1,6 bisphosphate aldolase (Fba) mRNA, complete cds Length = 1172 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 gtttcagcaatgttgcttccaaat 60 |||||||||||||| ||||||||| Sbjct: 704 gtttcagcaatgttccttccaaat 681
>gb|AC179924.2| Mus musculus BAC clone RP23-270O20 from chromosome 12, complete sequence Length = 217229 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 425 tagtttcacagaagcaaattttat 448 ||||| |||||||||||||||||| Sbjct: 8151 tagttgcacagaagcaaattttat 8128
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 caaactgaaaatatatagcttaca 25 |||||| ||||||||||||||||| Sbjct: 185913 caaacttaaaatatatagcttaca 185890
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 caaactgaaaatatatagcttaca 25 |||||| ||||||||||||||||| Sbjct: 105361 caaacttaaaatatatagcttaca 105338
>emb|BX664607.21| Zebrafish DNA sequence from clone CH211-132B12 in linkage group 18, complete sequence Length = 179328 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 atacactacatacatacaca 124 |||||||||||||||||||| Sbjct: 24073 atacactacatacatacaca 24092
>gb|AC114614.9| Mus musculus chromosome 5, clone RP24-81J14, complete sequence Length = 206921 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 atacactacatacatacaca 124 |||||||||||||||||||| Sbjct: 199951 atacactacatacatacaca 199932
>dbj|AK113560.1| Ciona intestinalis cDNA, clone:ciad073f05, full insert sequence Length = 1587 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 aactcttttcatgtacatat 420 |||||||||||||||||||| Sbjct: 1300 aactcttttcatgtacatat 1319
>gb|U49864.1|CRU49864 Chlamydomonas reinhardtii plus mating structure glycoprotein (fus1) gene, complete cds Length = 4813 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 acctttcaaaccgcctgtca 147 |||||||||||||||||||| Sbjct: 4527 acctttcaaaccgcctgtca 4546
>emb|CT030697.6| Mouse DNA sequence from clone RP23-274A4 on chromosome 12, complete sequence Length = 198527 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 425 tagtttcacagaagcaaattttat 448 ||||| |||||||||||||||||| Sbjct: 99533 tagttgcacagaagcaaattttat 99510
>gb|AC127589.4| Mus musculus BAC clone RP23-134K6 from 5, complete sequence Length = 209121 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 atacactacatacatacaca 124 |||||||||||||||||||| Sbjct: 147527 atacactacatacatacaca 147546
>emb|AL845529.10| Mouse DNA sequence from clone RP23-276D17 on chromosome 2, complete sequence Length = 166971 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 gctcctcaaatgcatccatg 278 |||||||||||||||||||| Sbjct: 65211 gctcctcaaatgcatccatg 65230
>gb|U96178.1|OVU96178 Onchocerca volvulus fructose-bisphosphate aldolase mRNA, partial cds Length = 1152 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 gtttcagcaatgttgcttccaaat 60 |||||||||||||| ||||||||| Sbjct: 684 gtttcagcaatgttccttccaaat 661
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aaccgcctgtcatgcttacc 155 |||||||||||||||||||| Sbjct: 402394 aaccgcctgtcatgcttacc 402375 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,782,528 Number of Sequences: 3902068 Number of extensions: 4782528 Number of successful extensions: 134626 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134192 Number of HSP's gapped (non-prelim): 434 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)