ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.... 30 1.2
2CEMA_CHLRE (Q37050) Chloroplast envelope membrane protein 30 2.0
3PDC2_CANAL (O60035) Protein PDC2 28 6.0
4SGCG_HUMAN (Q13326) Gamma-sarcoglycan (Gamma-SG) (35 kDa dystrop... 28 7.8

>ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)|
          Length = 887

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 71  LGTLDKRKNIAAQMKHVYTGGPIHVRKNYGVLVGKKE 181
           +G + + KNIA Q+K +   G IH+R  + + V   E
Sbjct: 397 MGVIAEGKNIAHQIKKININGIIHIRDRFNIPVSNDE 433



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>CEMA_CHLRE (Q37050) Chloroplast envelope membrane protein|
          Length = 500

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 187 HSISQVLLFSCWQLNLYTLLYVLVA*EIQV 276
           HSI  +  F    L+L+TLLY+L+  EIQ+
Sbjct: 373 HSIEAITNFFADLLSLFTLLYLLITLEIQI 402



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>PDC2_CANAL (O60035) Protein PDC2|
          Length = 836

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 154 LRCVGWKKRTMHSISQVLLFSCW-QLNLYTLL 246
           +R + W  R+ HS+S   +FS W + +L+ LL
Sbjct: 428 IRAIEWITRSWHSVSSERIFSSWKKTHLFNLL 459



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>SGCG_HUMAN (Q13326) Gamma-sarcoglycan (Gamma-SG) (35 kDa dystrophin-associated|
           glycoprotein) (35DAG)
          Length = 290

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 88  KKEYCCSNEA-CLHRGPNSCTEKLRCVGWKKRTMHSISQVLLFSCWQLNLYTLLYVL 255
           +++Y  + E  C+ R  N    K+   GW+KR ++ +  +LL     +NL   +++L
Sbjct: 2   REQYTTATEGICIERPENQYVYKIGIYGWRKRCLY-LFVLLLLIILVVNLALTIWIL 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,360,450
Number of Sequences: 219361
Number of extensions: 815241
Number of successful extensions: 2470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2470
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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