ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26e08 |
|---|---|
| Clone Library Name | barley_pub |
>DNE21_RHIME (Q92LA6) Error-prone DNA polymerase 1 (EC 2.7.7.7)| Length = 1116 Score = 32.7 bits (73), Expect = 0.21 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%) Frame = +1 Query: 31 PENGLGYLLSKQQESVKRKPKMRTQVSFPLSDHP--FGGPHSYIPIFSTRDQESKYAYPK 204 P G G+LL K E + P+ ++ SD+P + + E + YP Sbjct: 212 PIAGAGFLLQKNAERHLKGPREMARL---FSDYPEAIANTRKFFRELAFSLDELSHQYPD 268 Query: 205 PIAAGATSAEHFRKPLSRCSANRFP 279 A G T AE R+ ++ +A R+P Sbjct: 269 ENADGETPAESLRRLVAEGAAERYP 293
>EFG_NOCFA (Q5YPG3) Elongation factor G (EF-G)| Length = 700 Score = 31.6 bits (70), Expect = 0.47 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 8/63 (12%) Frame = +1 Query: 4 LLQSIIFFSP-----ENGLGYLLSKQQESVKRKPKMR---TQVSFPLSDHPFGGPHSYIP 159 +L ++I + P EN G++ K+ E + R+P ++F ++ HPF G +YI Sbjct: 274 MLDAVIDYLPSPLDVENVEGHVPGKEDEVINRRPSADEPFAALAFKIAVHPFFGKLTYIR 333 Query: 160 IFS 168 ++S Sbjct: 334 VYS 336
>S26A4_HUMAN (O43511) Pendrin (Sodium-independent chloride/iodide transporter)| (Solute carrier family 26 member 4) Length = 780 Score = 31.2 bits (69), Expect = 0.61 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 246 LPEVLGRCCTCGDRLRIGVLTLLIPCGKNWYI*MWSSKWMIR*W 115 L E L +CC+C + GVL L+P I W K+ ++ W Sbjct: 46 LRESLAKCCSCSRKRAFGVLKTLVP------ILEWLPKYRVKEW 83
>DUOX2_PIG (Q8HZK2) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-)| (NADH/NADPH thyroid oxidase p138-tox) Length = 1545 Score = 31.2 bits (69), Expect = 0.61 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -3 Query: 173 RVEKIGIYECGPPNG*SDNGNETCVLI 93 +V KIG++ CGPP G + N +TC LI Sbjct: 1505 QVRKIGVFSCGPP-GMTKNVEKTCQLI 1530
>SNDH_ACELI (Q44091) L-sorbosone dehydrogenase (EC 1.1.1.-) (SNDH)| Length = 449 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +1 Query: 52 LLSKQQESVKRKPKMRTQVSF-PLSD-HPFGGPHSYIPIFSTRDQESKYAYPKPIAAGAT 225 L Q S RKPK +V + P +D HP G P + F T+D++ + P +A + Sbjct: 366 LFVAQHGSWNRKPKSGYRVIYVPFTDGHPDGTPRDVLTGFLTQDEDHAHGRPVGLALDKS 425 Query: 226 SA 231 A Sbjct: 426 GA 427
>NDF1_MESAU (Q60430) Neurogenic differentiation factor 1 (NeuroD1) (Beta-cell| E-box trans-activator 2) (BETA2) Length = 355 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = +1 Query: 109 SFPLSDHPFGGPHSYIPIFSTRDQESKYAY-PKPIAAGATSAEHFRKPLSRCSANRF 276 SFP+ + + P P + T D + P P A AT F PL+ C++ F Sbjct: 212 SFPVHPYSYQSPGLPSPPYGTMDSSHVFQVKPPPHAYSATLEPFFESPLTDCTSPSF 268
>HEM2_SCHPO (P78974) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALADH) Length = 329 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = -2 Query: 369 KMVMMSLQLSYRCCIISYTMTRGGKISSKKRKPVCRASAQGLPEVLGRCC 220 K ++ L+LS++ C+ISY+ K +S P RA+A G P+ R C Sbjct: 179 KQKLVELELSHKVCVISYS----AKFASGFFGPF-RAAANGAPKFGDRSC 223
>YBEY_ECO57 (Q8XBK1) UPF0054 protein ybeY| Length = 155 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 225 ICRALQEALEQMLGKPVSFSWRRSCRHGSLYNL 323 ICR + E Q GKP+ W HGSL+ L Sbjct: 88 ICRQMVEKEAQEQGKPLEAHWAHMVVHGSLHLL 120
>DUOX1_RAT (Q8CIY2) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1551 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -3 Query: 173 RVEKIGIYECGPPNG*SDNGNETCVLI 93 +V KIG++ CGPP G + N + C LI Sbjct: 1511 QVRKIGVFSCGPP-GMTKNVEKACQLI 1536
>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1553 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -3 Query: 173 RVEKIGIYECGPPNG*SDNGNETCVLI 93 +V KIG++ CGPP G + N + C LI Sbjct: 1513 QVRKIGVFSCGPP-GMTKNVEKACQLI 1538
>DUOX1_HUMAN (Q9NRD9) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| thyroid oxidase 1) (Thyroid oxidase 1) (Large NOX 1) (Long NOX 1) Length = 1551 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -3 Query: 173 RVEKIGIYECGPPNG*SDNGNETCVLI 93 +V KIG++ CGPP G + N + C LI Sbjct: 1511 QVRKIGVFSCGPP-GMTKNVEKACQLI 1536
>DUOX1_CANFA (Q9MZF4) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| thyroid oxidase 1) (Thyroid oxidase 1) Length = 1551 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -3 Query: 173 RVEKIGIYECGPPNG*SDNGNETCVLI 93 +V KIG++ CGPP G + N + C LI Sbjct: 1511 QVRKIGVFSCGPP-GMTKNVEKACQLI 1536
>DUOX2_RAT (Q9ES45) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-)| (NADH/NADPH thyroid oxidase THOX2) (Thyroid oxidase 2) (Large NOX 2) (Long NOX 2) Length = 1517 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -3 Query: 173 RVEKIGIYECGPPNG*SDNGNETCVLI 93 +V KIG++ CGPP G + N + C LI Sbjct: 1477 QVHKIGVFSCGPP-GMTKNVEKACQLI 1502
>Y1680_MANSM (Q65RX3) UPF0054 protein MS1680| Length = 156 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 225 ICRALQEALEQMLGKPVSFSWRRSCRHGSLYNL 323 ICR + E Q GKP++ W HGSL+ L Sbjct: 89 ICRQVVEREAQEQGKPLTAHWAHMVVHGSLHLL 121
>YBEY_SHIFL (P0A899) UPF0054 protein ybeY| Length = 155 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 225 ICRALQEALEQMLGKPVSFSWRRSCRHGSLYNL 323 ICR + E Q GKP+ W HGSL+ L Sbjct: 88 ICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLL 120
>YBEY_ECOLI (P0A898) UPF0054 protein ybeY| Length = 155 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 225 ICRALQEALEQMLGKPVSFSWRRSCRHGSLYNL 323 ICR + E Q GKP+ W HGSL+ L Sbjct: 88 ICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLL 120
>YBEY_ECOL6 (Q8FJY3) UPF0054 protein ybeY| Length = 155 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +3 Query: 225 ICRALQEALEQMLGKPVSFSWRRSCRHGSLYNL 323 ICR + E Q GKP+ W HGSL+ L Sbjct: 88 ICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLL 120
>DUOX2_HUMAN (Q9NRD8) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| oxidase/peroxidase DUOX2) (NADPH thyroid oxidase 2) (Thyroid oxidase 2) (NADH/NADPH thyroid oxidase p138-tox) (p138 thyroid oxidase) (Large NOX 2) (Long NOX 2) Length = 1548 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -3 Query: 173 RVEKIGIYECGPPNG*SDNGNETCVLI 93 +V KIG++ CGPP G + N + C L+ Sbjct: 1508 QVRKIGVFSCGPP-GMTKNVEKACQLV 1533
>ESTS_DROVI (Q05487) Esterase S precursor (EC 3.1.1.1) (Est-S)| (Carboxylic-ester hydrolase S) (Carboxylesterase-S) Length = 542 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +1 Query: 85 KPKMRTQVSFPLSDHPFGGPHSY 153 KPK T++SFP+ H FGG S+ Sbjct: 107 KPKNLTRISFPVVAHIFGGGWSF 129
>OTC_VIBS2 (P96172) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)| Length = 301 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 52 LLSKQQESVKRKPKMRTQVSFPLSDHPFGGPHSYI 156 L K ++ KP +RT+V+F + H GG Y+ Sbjct: 36 LAGKSIVTIYEKPSLRTRVTFDIGIHKLGGHAVYL 70
>OTC_MORAB (Q9K4Y9) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)| Length = 301 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 52 LLSKQQESVKRKPKMRTQVSFPLSDHPFGGPHSYI 156 L K ++ KP +RT+V+F + H GG Y+ Sbjct: 36 LAGKSIVTIYEKPSLRTRVTFDIGIHKLGGHAVYL 70
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 28.1 bits (61), Expect = 5.2 Identities = 30/117 (25%), Positives = 38/117 (32%), Gaps = 2/117 (1%) Frame = +1 Query: 58 SKQQESVKRKPKMRTQVSFPLSDHPFGGPHSYIPIFSTRDQESKYAYPK--PIAAGATSA 231 S + + P +T S+P H F P S S +Q KY P A + Sbjct: 388 SSSSAATSQYPASQTLPSYP---HSFPPPTS----MSVSNQPPKYTQPSLPSQAVWSQGP 440 Query: 232 EHFRKPLSRCSANRFPFLGGDLAATGHCITYNATPV*KLQRHHHHLLVSKPQPTRQP 402 P R N G G + P HHHH +PQP QP Sbjct: 441 PPPPPPYGRLLPNNNTHPGPFPPTGGQSTAHPPAPA-----HHHHQQQQQPQPQPQP 492
>SUCR1_HUMAN (Q9BXA5) Succinate receptor 1 (G-protein coupled receptor 91) (P2Y| purinoceptor 1-like) Length = 330 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -1 Query: 355 VFATFIQVLHYKLYNDPWRQDLLQEKE 275 +F TFI + Y + P+R+ LLQ+KE Sbjct: 107 LFLTFISIDRYLIIKYPFREHLLQKKE 133
>RHOQ_RAT (Q9JJL4) Rho-related GTP-binding protein RhoQ (Ras-related| GTP-binding protein TC10) Length = 205 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 297 KISSKKRKPVCRASAQGLPEVLGRCC 220 +++ K KPVC Q L + +G CC Sbjct: 134 RLNDMKEKPVCVEQGQKLAKEIGACC 159
>RHOQ_MOUSE (Q8R527) Rho-related GTP-binding protein RhoQ (Ras-related| GTP-binding protein TC10) Length = 205 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 297 KISSKKRKPVCRASAQGLPEVLGRCC 220 +++ K KPVC Q L + +G CC Sbjct: 134 RLNDMKEKPVCVEQGQKLAKEIGACC 159
>NDF1_HUMAN (Q13562) Neurogenic differentiation factor 1 (NeuroD1) (NeuroD)| Length = 356 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +1 Query: 109 SFPLSDHPFGGPHSYIPIFSTRDQESKY-AYPKPIAAGATSAEHFRKPLSRCSANRF 276 SFP+ + + P P + T D + P P A A F PL+ C++ F Sbjct: 213 SFPVHPYSYQSPGLPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSF 269
>KKK1_YEAST (P34244) Probable serine/threonine-protein kinase YKL101W (EC| 2.7.11.1) Length = 1518 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -1 Query: 196 RRTYSLDPVWKKLVYMNVVLQMDDPIMEMRPA 101 R YSL + K+ + +N +L DDP+ +PA Sbjct: 673 RSLYSLQSISKRSLNLNDLLVFDDPLPSKKPA 704
>DNAJ_GEOKA (Q5KWZ8) Chaperone protein dnaJ| Length = 382 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 327 IISYTMTRGGKISSKKRKPVCRASAQGLPEVLGRCCTCGDRLRI 196 + S T G+I +++ PVC + + +PE +C TCG R+ Sbjct: 176 VTSEQATPFGRIVNRRTCPVCGGTGRYIPE---KCPTCGGTGRV 216
>SRD26_CAEEL (P92015) Serpentine receptor class delta-26 (Protein srd-26)| Length = 317 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 84 ETKNENAGLISIIGSSIWRTTFIYTNFF 167 + KN NA L+ +I ++ TFI+ FF Sbjct: 213 DVKNLNARLVKVINFQVFLPTFIFLGFF 240
>EFG_MYCTU (P0A556) Elongation factor G (EF-G)| Length = 701 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +1 Query: 43 LGYLLSKQQESVKRKPKMR---TQVSFPLSDHPFGGPHSYIPIFS 168 +G+ +K+ E V RK ++F ++ HPF G +YI ++S Sbjct: 293 IGHAPAKEDEEVVRKATTDEPFAALAFKIATHPFFGKLTYIRVYS 337
>EFG_MYCBO (P0A557) Elongation factor G (EF-G)| Length = 701 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +1 Query: 43 LGYLLSKQQESVKRKPKMR---TQVSFPLSDHPFGGPHSYIPIFS 168 +G+ +K+ E V RK ++F ++ HPF G +YI ++S Sbjct: 293 IGHAPAKEDEEVVRKATTDEPFAALAFKIATHPFFGKLTYIRVYS 337
>NDF1_RAT (Q64289) Neurogenic differentiation factor 1 (NeuroD1) (Basic| helix-loop-helix factor 1) (BHF-1) Length = 357 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +1 Query: 109 SFPLSDHPFGGPHSYIPIFSTRDQESKY-AYPKPIAAGATSAEHFRKPLSRCSANRF 276 SFP+ + + P P + T D + P P A A F PL+ C++ F Sbjct: 213 SFPVHPYSYQSPGLPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSF 269
>NDF1_MOUSE (Q60867) Neurogenic differentiation factor 1 (NeuroD1)| Length = 357 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +1 Query: 109 SFPLSDHPFGGPHSYIPIFSTRDQESKY-AYPKPIAAGATSAEHFRKPLSRCSANRF 276 SFP+ + + P P + T D + P P A A F PL+ C++ F Sbjct: 213 SFPVHPYSYQSPGLPSPPYGTMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSF 269
>SL9A5_HUMAN (Q14940) Sodium/hydrogen exchanger 5 (Na(+)/H(+) exchanger 5)| (NHE-5) (Solute carrier family 9 member 5) Length = 896 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = +1 Query: 70 ESVKRKPKMRTQVSFPLSDHPFGGPHSYIPIFSTRDQESKYAYPKPIA-AGATSAE 234 ES+ P + + L HP G +P+ D S +A+P +A AG + +E Sbjct: 799 ESLASPPCNQAPILTCLPPHPRGTEEPQVPLHLPSDPRSSFAFPPSLAKAGRSRSE 854
>AMEL_TACAC (O97647) Amelogenin (Fragment)| Length = 121 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 316 ITYNATPV*KLQRHHHHLLVSKPQPTRQP 402 ++ + TP LQ HHH +++ QPT+ P Sbjct: 9 LSQHQTPTHALQSHHHIPVMATQQPTQPP 37
>RHOQ_HUMAN (P17081) Rho-related GTP-binding protein RhoQ (Ras-related| GTP-binding protein TC10) Length = 205 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = -2 Query: 297 KISSKKRKPVCRASAQGLPEVLGRCC 220 +++ K KP+C Q L + +G CC Sbjct: 134 RLNDMKEKPICVEQGQKLAKEIGACC 159
>EFG1_TREPA (O83748) Elongation factor G 1 (EF-G 1)| Length = 695 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -1 Query: 331 LHYKLYNDPWRQDLLQEKETGLPSICSRAS*SAR 230 LH +Y + R++ E ETG+P + R + SAR Sbjct: 453 LHLDVYIERMRREYKCEVETGMPQVAYREAISAR 486 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,153,756 Number of Sequences: 219361 Number of extensions: 1401308 Number of successful extensions: 3988 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 3876 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3985 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
