ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067994.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 72 2e-09
3gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare str... 72 2e-09
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5gb|AC163683.4| Mus musculus BAC clone RP23-8L20 from chromosome ... 44 0.35
6gb|AC163747.4| Mus musculus BAC clone RP23-403P6 from chromosome... 44 0.35
7gb|AC007037.4| Homo sapiens BAC clone RP11-119H15 from 2, comple... 44 0.35
8dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 44 0.35
9dbj|AB021119.1| Arabidopsis thaliana sigD gene for RNA polymeras... 44 0.35
10dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.35
11dbj|AB083049.1| Corynebacterium efficiens odhA gene for 2-oxoglu... 44 0.35
12gb|AY818950.1| Veronica agrestis 18S ribosomal RNA (rrn18) gene,... 42 1.4
13gb|AY771350.1| Homo sapiens heme oxygenase (decycling) 2 (HMOX2)... 42 1.4
14gb|DQ317029.1| Monsonia emarginata small subunit ribosomal RNA g... 42 1.4
15gb|DQ317028.1| Geranium macrorrhizum small subunit ribosomal RNA... 42 1.4
16gb|DQ317007.1| Erodium trifolium small subunit ribosomal RNA gen... 42 1.4
17gb|DQ317006.1| Erodium pelargoniflorum small subunit ribosomal R... 42 1.4
18gb|DQ317005.1| Erodium chrysanthum small subunit ribosomal RNA g... 42 1.4
19gb|DQ317004.1| Sarcocaulon vanderietiae small subunit ribosomal ... 42 1.4
20emb|AJ389621.1|PSE389621 Plantago sericea mitochondrial partial ... 42 1.4
21emb|AJ389620.1|PCY389620 Plantago cyanops mitochondrial partial ... 42 1.4
22emb|AJ389619.1|PLA389619 Plantago lanceolata mitochondrial parti... 42 1.4
23emb|AJ389618.1|PAT389618 Plantago atrata mitochondrial partial 1... 42 1.4
24gb|AF194003.1| Geranium himalayense small subunit ribosomal RNA ... 42 1.4
25gb|AF194002.1| Hypseocharis pimpinellifolia small subunit riboso... 42 1.4
26gb|AF193999.1| Digitalis purpurea small subunit ribosomal RNA (m... 42 1.4
27gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bi... 42 1.4
28gb|AC007606.8| Homo sapiens chromosome 16 clone RP11-35P16, comp... 42 1.4
29gb|U82642.1|EVU82642 Epifagus virginiana small subunit ribosomal... 42 1.4
30ref|XM_472301.1| Oryza sativa (japonica cultivar-group), predic... 40 5.5
31gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer... 40 5.5
32gb|AC122325.4| Mus musculus BAC clone RP23-334H17 from chromosom... 40 5.5
33gb|AC145350.2| Homo sapiens chromosome 16 clone RP11-19N8, compl... 40 5.5
34emb|CR932438.14| Zebrafish DNA sequence from clone DKEY-250O4 in... 40 5.5
35gb|AC140862.3| Homo sapiens chromosome 16 clone RP11-1057D24, co... 40 5.5
36emb|AL591144.6| Zebrafish DNA sequence from clone BUSM1-104N07 i... 40 5.5
37emb|BX537137.13| Zebrafish DNA sequence from clone DKEYP-87D1 in... 40 5.5
38gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, compl... 40 5.5
39gb|AC140873.3| Homo sapiens chromosome 16 clone RP11-1161D4, com... 40 5.5
40gb|AC109814.5| Homo sapiens BAC clone RP13-976I19 from 4, comple... 40 5.5
41gb|AC138916.3| Homo sapiens chromosome 16 clone RP11-629J1, comp... 40 5.5
42gb|AC023153.6| Homo sapiens BAC clone RP11-743M22 from 2, comple... 40 5.5
43emb|BX548173.6| Zebrafish DNA sequence from clone DKEY-47K16 in ... 40 5.5
44gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, com... 40 5.5
45emb|AJ327185.1|HSA327185 Homo sapiens genomic sequence surroundi... 40 5.5
46emb|CR352299.11| Zebrafish DNA sequence from clone CH211-204E6 i... 40 5.5
47gb|AC153619.5| Mus musculus 6 BAC RP23-365G1 (Roswell Park Cance... 40 5.5
48emb|BX571689.20| Zebrafish DNA sequence from clone DKEY-181H23 i... 40 5.5
49emb|AL805973.6| Mouse DNA sequence from clone RP23-69G24 on chro... 40 5.5
50gb|AC121834.4| Mus musculus BAC clone RP24-72F20 from chromosome... 40 5.5 
>dbj|AK067994.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123J15, full
            insert sequence
          Length = 3025

 Score =  113 bits (57), Expect = 5e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                        
Query: 238  ttcaggaagcccttgagcagatgctcggcaaaccggtttccttttcttggaggagatctt 297
            ||||||||||  | |||||||||   ||||| ||||||||||||  |||||||| | |||
Sbjct: 2787 ttcaggaagctttcgagcagatgtcaggcaacccggtttcctttctttggaggacacctt 2728

                                                                        
Query: 298  gccgccacgggtcattgtataacttataatgcaacacctgtatgaaagttgcaaagacat 357
            ||||||| |||||| ||||||| || |||||||| |||||||||||||| || |||||||
Sbjct: 2727 gccgccaagggtcaatgtataatttgtaatgcaatacctgtatgaaagtagcgaagacat 2668

                                                 
Query: 358  catcaccatcttctagtttcgaaacctcaaccgacca 394
            ||||| | |  |||||||| || |||||||| |||||
Sbjct: 2667 catcaaccttgtctagttttgacacctcaacagacca 2631
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                           
Query: 238     ttcaggaagcccttgagcagatgctcggcaaaccggtttccttttcttggaggagatctt 297
               ||||||||||  | |||||||||   ||||| ||||||||||||  |||||||| | |||
Sbjct: 3964913 ttcaggaagctttcgagcagatgtcaggcaacccggtttcctttctttggaggacacctt 3964854

                                                       
Query: 298     gccgccacgggtcattgtataacttataatgcaacacctg 337
               ||||||| |||||| ||||||| || |||||||| |||||
Sbjct: 3964853 gccgccaagggtcaatgtataatttgtaatgcaatacctg 3964814



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                           
Query: 333     acctgtatgaaagttgcaaagacatcatcaccatcttctagtttcgaaacctcaaccgac 392
               |||||||||||||| || |||||||||||| | |  |||||||| || |||||||| |||
Sbjct: 3964592 acctgtatgaaagtagcgaagacatcatcaaccttgtctagttttgacacctcaacagac 3964533

                 
Query: 393     ca 394
               ||
Sbjct: 3964532 ca 3964531
to top
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0061L19, from chromosome 3, complete sequence
          Length = 153322

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                          
Query: 238    ttcaggaagcccttgagcagatgctcggcaaaccggtttccttttcttggaggagatctt 297
              ||||||||||  | |||||||||   ||||| ||||||||||||  |||||||| | |||
Sbjct: 134455 ttcaggaagctttcgagcagatgtcaggcaacccggtttcctttctttggaggacacctt 134514

                                                      
Query: 298    gccgccacgggtcattgtataacttataatgcaacacctg 337
              ||||||| |||||| ||||||| || |||||||| |||||
Sbjct: 134515 gccgccaagggtcaatgtataatttgtaatgcaatacctg 134554



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                          
Query: 333    acctgtatgaaagttgcaaagacatcatcaccatcttctagtttcgaaacctcaaccgac 392
              |||||||||||||| || |||||||||||| | |  |||||||| || |||||||| |||
Sbjct: 134776 acctgtatgaaagtagcgaagacatcatcaaccttgtctagttttgacacctcaacagac 134835

                
Query: 393    ca 394
              ||
Sbjct: 134836 ca 134837
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                           
Query: 238     ttcaggaagcccttgagcagatgctcggcaaaccggtttccttttcttggaggagatctt 297
               ||||||||||  | |||||||||   ||||| ||||||||||||  |||||||| | |||
Sbjct: 3965024 ttcaggaagctttcgagcagatgtcaggcaacccggtttcctttctttggaggacacctt 3964965

                                                       
Query: 298     gccgccacgggtcattgtataacttataatgcaacacctg 337
               ||||||| |||||| ||||||| || |||||||| |||||
Sbjct: 3964964 gccgccaagggtcaatgtataatttgtaatgcaatacctg 3964925



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                           
Query: 333     acctgtatgaaagttgcaaagacatcatcaccatcttctagtttcgaaacctcaaccgac 392
               |||||||||||||| || |||||||||||| | |  |||||||| || |||||||| |||
Sbjct: 3964703 acctgtatgaaagtagcgaagacatcatcaaccttgtctagttttgacacctcaacagac 3964644

                 
Query: 393     ca 394
               ||
Sbjct: 3964643 ca 3964642
to top
>gb|AC163683.4| Mus musculus BAC clone RP23-8L20 from chromosome 6, complete sequence
          Length = 218138

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 30    tccagagaatggtctgggttat 51
             ||||||||||||||||||||||
Sbjct: 95640 tccagagaatggtctgggttat 95661
to top
>gb|AC163747.4| Mus musculus BAC clone RP23-403P6 from chromosome 6, complete
            sequence
          Length = 185160

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 30   tccagagaatggtctgggttat 51
            ||||||||||||||||||||||
Sbjct: 2611 tccagagaatggtctgggttat 2632
to top
>gb|AC007037.4| Homo sapiens BAC clone RP11-119H15 from 2, complete sequence
          Length = 168084

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 264   ggcaaaccggtttccttttctt 285
             ||||||||||||||||||||||
Sbjct: 12889 ggcaaaccggtttccttttctt 12868
to top
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 288     aggagatcttgccgccacgggt 309
               ||||||||||||||||||||||
Sbjct: 1246477 aggagatcttgccgccacgggt 1246498
to top
>dbj|AB021119.1| Arabidopsis thaliana sigD gene for RNA polymerase sigma subunit
           SigD and spliced variant SigD*, complete cds
          Length = 2975

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 79  aaaaggaaaccaaaaatgagaa 100
           ||||||||||||||||||||||
Sbjct: 282 aaaaggaaaccaaaaatgagaa 261
to top
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12
          Length = 79259

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 79    aaaaggaaaccaaaaatgagaa 100
             ||||||||||||||||||||||
Sbjct: 74187 aaaaggaaaccaaaaatgagaa 74208
to top
>dbj|AB083049.1| Corynebacterium efficiens odhA gene for 2-oxoglutarate
           dehydrogenase, complete cds
          Length = 4096

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 288 aggagatcttgccgccacgggt 309
           ||||||||||||||||||||||
Sbjct: 766 aggagatcttgccgccacgggt 745
to top
>gb|AY818950.1| Veronica agrestis 18S ribosomal RNA (rrn18) gene, partial sequence;
            mitochondrial
          Length = 1909

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1021 atgcaacacctgtatgaaagt 1001
to top
>gb|AY771350.1| Homo sapiens heme oxygenase (decycling) 2 (HMOX2) gene, complete cds
          Length = 37879

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 74   ctgttaaaaggaaaccaaaaa 94
            |||||||||||||||||||||
Sbjct: 3922 ctgttaaaaggaaaccaaaaa 3902
to top
>gb|DQ317029.1| Monsonia emarginata small subunit ribosomal RNA gene, partial
            sequence; mitochondrial
          Length = 1868

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1003 atgcaacacctgtatgaaagt 983
to top
>gb|DQ317028.1| Geranium macrorrhizum small subunit ribosomal RNA gene, partial
           sequence; mitochondrial
          Length = 1875

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 326 atgcaacacctgtatgaaagt 346
           |||||||||||||||||||||
Sbjct: 999 atgcaacacctgtatgaaagt 979
to top
>gb|DQ317007.1| Erodium trifolium small subunit ribosomal RNA gene, partial sequence;
            mitochondrial
          Length = 1884

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1015 atgcaacacctgtatgaaagt 995
to top
>gb|DQ317006.1| Erodium pelargoniflorum small subunit ribosomal RNA gene, partial
            sequence; mitochondrial
          Length = 1870

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1003 atgcaacacctgtatgaaagt 983
to top
>gb|DQ317005.1| Erodium chrysanthum small subunit ribosomal RNA gene, partial
            sequence; mitochondrial
          Length = 1926

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1032 atgcaacacctgtatgaaagt 1012
to top
>gb|DQ317004.1| Sarcocaulon vanderietiae small subunit ribosomal RNA gene, partial
            sequence; mitochondrial
          Length = 1868

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1003 atgcaacacctgtatgaaagt 983
to top
>emb|AJ389621.1|PSE389621 Plantago sericea mitochondrial partial 18S rRNA gene
          Length = 1657

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1059 atgcaacacctgtatgaaagt 1039
to top
>emb|AJ389620.1|PCY389620 Plantago cyanops mitochondrial partial 18S rRNA gene
          Length = 1657

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1059 atgcaacacctgtatgaaagt 1039
to top
>emb|AJ389619.1|PLA389619 Plantago lanceolata mitochondrial partial 18S rRNA gene
          Length = 1629

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1030 atgcaacacctgtatgaaagt 1010
to top
>emb|AJ389618.1|PAT389618 Plantago atrata mitochondrial partial 18S rRNA gene
          Length = 1613

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1014 atgcaacacctgtatgaaagt 994
to top
>gb|AF194003.1| Geranium himalayense small subunit ribosomal RNA (mtSSU) gene,
            partial sequence; mitochondrial gene for mitochondrial
            product
          Length = 1874

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1003 atgcaacacctgtatgaaagt 983
to top
>gb|AF194002.1| Hypseocharis pimpinellifolia small subunit ribosomal RNA (mtSSU)
            gene, partial sequence; mitochondrial gene for
            mitochondrial product
          Length = 1743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1004 atgcaacacctgtatgaaagt 984
to top
>gb|AF193999.1| Digitalis purpurea small subunit ribosomal RNA (mtSSU) gene, partial
            sequence; mitochondrial gene for mitochondrial product
          Length = 1870

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  atgcaacacctgtatgaaagt 346
            |||||||||||||||||||||
Sbjct: 1003 atgcaacacctgtatgaaagt 983
to top
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete
             sequence
          Length = 50000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 346   ttgcaaagacatcatcaccat 366
             |||||||||||||||||||||
Sbjct: 45797 ttgcaaagacatcatcaccat 45817
to top
>gb|AC007606.8| Homo sapiens chromosome 16 clone RP11-35P16, complete sequence
          Length = 157477

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 74    ctgttaaaaggaaaccaaaaa 94
             |||||||||||||||||||||
Sbjct: 26931 ctgttaaaaggaaaccaaaaa 26911
to top
>gb|U82642.1|EVU82642 Epifagus virginiana small subunit ribosomal RNA gene, mitochondrial
           gene for mitochondrial RNA, complete sequence
          Length = 1038

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 326 atgcaacacctgtatgaaagt 346
           |||||||||||||||||||||
Sbjct: 966 atgcaacacctgtatgaaagt 946
to top
>ref|XM_472301.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1518

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 343 aagttgcaaagacatcatcaccatcttc 370
           ||||||||||| ||||||||||||||||
Sbjct: 336 aagttgcaaag-catcatcaccatcttc 310
to top
>gb|AC166290.7| Mus musculus  BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J
            Female) Mouse BAC Library) complete sequence
          Length = 242055

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 274  tttccttttcttggaggaga 293
            ||||||||||||||||||||
Sbjct: 7895 tttccttttcttggaggaga 7914
to top
>gb|AC122325.4| Mus musculus BAC clone RP23-334H17 from chromosome 5, complete sequence
          Length = 184869

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   agcacttcaggaagcccttg 252
             ||||||||||||||||||||
Sbjct: 53486 agcacttcaggaagcccttg 53467
to top
>gb|AC145350.2| Homo sapiens chromosome 16 clone RP11-19N8, complete sequence
          Length = 163018

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     taaaaggaaaccaaaaatga 97
              ||||||||||||||||||||
Sbjct: 120168 taaaaggaaaccaaaaatga 120187
to top
>emb|CR932438.14| Zebrafish DNA sequence from clone DKEY-250O4 in linkage group 13,
             complete sequence
          Length = 56325

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    ttctgtcaaaacaacaagaa 72
             ||||||||||||||||||||
Sbjct: 28227 ttctgtcaaaacaacaagaa 28246



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    ttctgtcaaaacaacaagaa 72
             ||||||||||||||||||||
Sbjct: 26383 ttctgtcaaaacaacaagaa 26364
to top
>gb|AC140862.3| Homo sapiens chromosome 16 clone RP11-1057D24, complete sequence
          Length = 168045

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     taaaaggaaaccaaaaatga 97
              ||||||||||||||||||||
Sbjct: 156009 taaaaggaaaccaaaaatga 156028
to top
>emb|AL591144.6| Zebrafish DNA sequence from clone BUSM1-104N07 in linkage group 8
              Contains part of a seven novel genes for a proteins similar
              to MHC class II alpha and beta chain, the putative novel
              retrovirus VIRDR1 and a CpG island, complete sequence
          Length = 111434

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     ttctgtcaaaacaacaagaa 72
              ||||||||||||||||||||
Sbjct: 103702 ttctgtcaaaacaacaagaa 103683
to top
>emb|BX537137.13| Zebrafish DNA sequence from clone DKEYP-87D1 in linkage group 20 Contains
              two novel genes and two CpG islands, complete sequence
          Length = 200339

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     ttctgtcaaaacaacaagaa 72
              ||||||||||||||||||||
Sbjct: 168434 ttctgtcaaaacaacaagaa 168453
to top
>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence
          Length = 193714

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   tttccttttcttggaggaga 293
             ||||||||||||||||||||
Sbjct: 86181 tttccttttcttggaggaga 86200
to top
>gb|AC140873.3| Homo sapiens chromosome 16 clone RP11-1161D4, complete sequence
          Length = 191227

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     taaaaggaaaccaaaaatga 97
              ||||||||||||||||||||
Sbjct: 110366 taaaaggaaaccaaaaatga 110385
to top
>gb|AC109814.5| Homo sapiens BAC clone RP13-976I19 from 4, complete sequence
          Length = 48718

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    gttaaaaggaaaccaaaaat 95
             ||||||||||||||||||||
Sbjct: 32999 gttaaaaggaaaccaaaaat 32980
to top
>gb|AC138916.3| Homo sapiens chromosome 16 clone RP11-629J1, complete sequence
          Length = 210885

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     taaaaggaaaccaaaaatga 97
              ||||||||||||||||||||
Sbjct: 189219 taaaaggaaaccaaaaatga 189238
to top
>gb|AC023153.6| Homo sapiens BAC clone RP11-743M22 from 2, complete sequence
          Length = 36123

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   tccagagaatggtctgggtt 49
            ||||||||||||||||||||
Sbjct: 2480 tccagagaatggtctgggtt 2499
to top
>emb|BX548173.6| Zebrafish DNA sequence from clone DKEY-47K16 in linkage group 21,
             complete sequence
          Length = 210873

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    ttctgtcaaaacaacaagaa 72
             ||||||||||||||||||||
Sbjct: 28098 ttctgtcaaaacaacaagaa 28117
to top
>gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence
          Length = 147102

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 68     aagaatctgttaaaaggaaaccaa 91
              ||||||||||| ||||||||||||
Sbjct: 126790 aagaatctgtttaaaggaaaccaa 126813
to top
>emb|AJ327185.1|HSA327185 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-DH24R
          Length = 759

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  aagaatctgttaaaaggaaa 87
           ||||||||||||||||||||
Sbjct: 394 aagaatctgttaaaaggaaa 413
to top
>emb|CR352299.11| Zebrafish DNA sequence from clone CH211-204E6 in linkage group 13,
              complete sequence
          Length = 120827

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     ttctgtcaaaacaacaagaa 72
              ||||||||||||||||||||
Sbjct: 103519 ttctgtcaaaacaacaagaa 103500
to top
>gb|AC153619.5| Mus musculus 6 BAC RP23-365G1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 116250

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    tttccttttcttggaggaga 293
              ||||||||||||||||||||
Sbjct: 100143 tttccttttcttggaggaga 100162
to top
>emb|BX571689.20| Zebrafish DNA sequence from clone DKEY-181H23 in linkage group 24,
             complete sequence
          Length = 154608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    ttctgtcaaaacaacaagaa 72
             ||||||||||||||||||||
Sbjct: 91444 ttctgtcaaaacaacaagaa 91463
to top
>emb|AL805973.6| Mouse DNA sequence from clone RP23-69G24 on chromosome 4, complete
              sequence
          Length = 138031

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     ttaaaaggaaaccaaaaatgagaa 100
              ||||||||||||||||| ||||||
Sbjct: 111512 ttaaaaggaaaccaaaattgagaa 111535
to top
>gb|AC121834.4| Mus musculus BAC clone RP24-72F20 from chromosome 5, complete sequence
          Length = 226382

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    agcacttcaggaagcccttg 252
              ||||||||||||||||||||
Sbjct: 180999 agcacttcaggaagcccttg 180980


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,073,792
Number of Sequences: 3902068
Number of extensions: 4073792
Number of successful extensions: 111281
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 111163
Number of HSP's gapped (non-prelim): 119
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top