ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26e05 |
|---|---|
| Clone Library Name | barley_pub |
>SHH_RAT (Q63673) Sonic hedgehog protein precursor (SHH) [Contains: Sonic| hedgehog protein N-product; Sonic hedgehog protein C-product] Length = 437 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -1 Query: 198 VSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 97 V AG DWVY + KA ++ +KA S + S+GC Sbjct: 167 VEAGFDWVYYESKARIHCSVKAE-NSVAAKSDGC 199
>SHH_BRARE (Q92008) Sonic hedgehog A protein precursor (SHHA) (VHH-1)| [Contains: Sonic hedgehog A protein N-product; Sonic hedgehog A protein C-product] Length = 418 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -1 Query: 258 DVTTLHLEARECT*LSE*YTVSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 97 D+TT + + LS V AG DWVY + KA ++ +KA S + S GC Sbjct: 147 DITTSDRDKSKYGTLSR-LAVEAGFDWVYYESKAHIHCSVKAE-NSVAAKSGGC 198
>TWHH_BRARE (Q90419) Tiggy-winkle hedgehog protein precursor (TWHH) (Sonic| hedgehog B protein) (SHHB) [Contains: Tiggy-winkle hedgehog protein N-product; Tiggy-winkle hedgehog protein C-product] Length = 416 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -1 Query: 258 DVTTLHLEARECT*LSE*YTVSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 97 D+TT + + LS V AG DWVY + KA ++ +KA S + S GC Sbjct: 150 DITTSDRDKSKYGMLSR-LAVEAGFDWVYYESKAHIHCSVKAE-NSVAAKSGGC 201
>DHH1_XENLA (Q91610) Desert hedgehog protein 1 precursor (DHH-1) (Cephalic| hedgehog protein) (X-CHH) [Contains: Desert hedgehog protein 1 N-product; Desert hedgehog protein 1 C-product] Length = 396 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -1 Query: 198 VSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 97 V AG DWVY + KA ++ +KA S S GC Sbjct: 166 VEAGFDWVYYESKAHIHVSVKAD-NSLGVRSGGC 198
>SHH_MOUSE (Q62226) Sonic hedgehog protein precursor (SHH) (HHG-1) [Contains:| Sonic hedgehog protein N-product; Sonic hedgehog protein C-product] Length = 437 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -1 Query: 198 VSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 97 V AG DWVY + KA ++ +KA S + S GC Sbjct: 167 VEAGFDWVYYESKAHIHCSVKAE-NSVAAKSGGC 199
>Y454_CHLCV (O34023) Hypothetical protein CCA00454 (ORFF)| Length = 581 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -1 Query: 384 SSPPKLRQFWKHQWLKCFGSS 322 SSPPKL Q WKH+ L G S Sbjct: 90 SSPPKLSQLWKHRNLLLRGLS 110
>SHH_CHICK (Q91035) Sonic hedgehog protein precursor (SHH) [Contains: Sonic| hedgehog protein N-product; Sonic hedgehog protein C-product] Length = 425 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -1 Query: 198 VSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 97 V AG DWVY + KA ++ +KA S + S GC Sbjct: 169 VEAGFDWVYYESKAHIHCSVKAE-NSVAAKSGGC 201
>SHH_HUMAN (Q15465) Sonic hedgehog protein precursor (SHH) (HHG-1) [Contains:| Sonic hedgehog protein N-product; Sonic hedgehog protein C-product] Length = 462 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -1 Query: 198 VSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 97 V AG DWVY + KA ++ +KA S + S GC Sbjct: 166 VEAGFDWVYYESKAHIHCSVKAE-NSVAAKSGGC 198
>SHH_XENLA (Q92000) Sonic hedgehog protein precursor (X-SHH) (VHH-1)| [Contains: Sonic hedgehog protein N-product; Sonic hedgehog protein C-product] Length = 444 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = -1 Query: 198 VSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 97 V AG DWVY + KA ++ +KA S + S GC Sbjct: 167 VEAGFDWVYYESKAHIHCSVKAE-NSVAAKSGGC 199
>SRGP2_MOUSE (Q812A2) SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3)| (srGAP2) (WAVE-associated Rac GTPase-activating protein) (WRP) (Rho-GTPase-activating protein 14) Length = 1099 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 96 CNPPKGKKTRRNQPLFGHSRRLF 164 C PPK +K RR +PL +S +LF Sbjct: 482 CLPPKPQKMRRPRPLSVYSHKLF 504
>SRGP2_HUMAN (O43295) SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3)| (srGAP2) (WAVE-associated Rac GTPase-activating protein) (WRP) (Mental disorder-associated GAP) (Rho-GTPase-activating protein 14) Length = 1099 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 96 CNPPKGKKTRRNQPLFGHSRRLF 164 C PPK +K RR +PL +S +LF Sbjct: 482 CLPPKPQKMRRPRPLSVYSHKLF 504
>DPOL_VZVD (P09252) DNA polymerase (EC 2.7.7.7)| Length = 1194 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 263 SSFICLHAACFDKVRGTET*LLPKHFSH 346 + F+C+HA C+D TE + + SH Sbjct: 1150 AGFVCIHAPCWDNKMNTEAEITEEEQSH 1177
>BTLA_HUMAN (Q7Z6A9) B- and T-lymphocyte attenuator precursor (B- and| T-lymphocyte-associated protein) (CD272 antigen) Length = 289 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%) Frame = -3 Query: 163 KSLRE*PNKG------WFLLVFLPFGGLHILVESCIY*LC 62 KS E P+K W L LP GGL +L+ +C C Sbjct: 137 KSASERPSKDEMASRPWLLYSLLPLGGLPLLITTCFCLFC 176
>CSTN1_HUMAN (O94985) Calsyntenin-1 precursor| Length = 981 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = +3 Query: 87 TSICNPPKGKKTRRNQPLFGHSRRLFFLYKPSQFLH*QYTTRSAMYTLS-LPNEAW*HLV 263 T +C+ K R + L+ H RL FL++ +Y + L+ + +E W H V Sbjct: 403 TILCSSDKTDMNRHHYSLYVHGCRLIFLFRQDPSEEKKYRPAEFHWKLNQVCDEEWHHYV 462 Query: 264 L 266 L Sbjct: 463 L 463
>STM_ARATH (Q38874) Homeobox protein SHOOT MERISTEMLESS| Length = 382 Score = 27.3 bits (59), Expect = 9.1 Identities = 24/95 (25%), Positives = 40/95 (42%) Frame = -2 Query: 359 FGSTNG*NVLGAVRSLFPLLCQSRQHEGR*N*NQMLPRFIWKRESVHS*ASSILLVQELT 180 F N + + + P + S QH G + +Q + +S H +SS+ Sbjct: 14 FAGDNSDGPMCPMMMMMPPIMTSHQHHGHDHQHQQQEHDGYAYQSHHQQSSSL------- 66 Query: 179 GFIQKEKPP*MTK*RLVSSRFLTLRRVAYTS*ELH 75 F+Q PP TK ++ SS + AY+ E+H Sbjct: 67 -FLQSLAPPQGTKNKVASSSSPSSCAPAYSLMEIH 100
>COFH_GLOVI (Q7NMI9) FO synthase subunit 2 (EC 2.5.1.-)| (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2) Length = 399 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +2 Query: 206 YSLSYVHSLASK*SVVTSGSSFICLHAACFDKVRG 310 YSL + H L V SG++ IC+ VRG Sbjct: 99 YSLDFAHILQKTAEAVASGATEICMQGGLNPAVRG 133
>IHH_MOUSE (P97812) Indian hedgehog protein precursor (IHH) (HHG-2) [Contains:| Indian hedgehog protein N-product; Indian hedgehog protein C-product] Length = 411 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 Query: 198 VSAGIDWVYTKRKASVNDQIKA 133 V AG DWVY + KA V+ +K+ Sbjct: 171 VEAGFDWVYYESKAHVHCSVKS 192
>IHH_HUMAN (Q14623) Indian hedgehog protein precursor (IHH) (HHG-2) [Contains:| Indian hedgehog protein N-product; Indian hedgehog protein C-product] Length = 411 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -1 Query: 198 VSAGIDWVYTKRKASVNDQIKA 133 V AG DWVY + KA V+ +K+ Sbjct: 171 VEAGFDWVYYESKAHVHCSVKS 192
>L_SV5WR (Q03396) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2255 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 115 RKREETSLYLVIHGGFSFCINPVNSC 192 R EE++L+L H G S C+ PV+SC Sbjct: 1358 RTFEESTLHL--HTGASCCVRPVDSC 1381
>L_SV5 (Q88434) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2255 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 115 RKREETSLYLVIHGGFSFCINPVNSC 192 R EE++L+L H G S C+ PV+SC Sbjct: 1358 RTFEESTLHL--HTGASCCVRPVDSC 1381 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,489,927 Number of Sequences: 219361 Number of extensions: 1004490 Number of successful extensions: 2082 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2057 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2081 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
