ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017314.1| Zea mays clone EL01N0318C04.c mRNA sequence 62 1e-06
2gb|BT023996.1| Zea mays clone EL01N0406B12 mRNA sequence 62 1e-06
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.021
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
5gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.021
6dbj|AK066679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
7dbj|AB042935.1| Oryza sativa (japonica cultivar-group) Os-RelA1 ... 48 0.021
8gb|AC079773.8| Homo sapiens BAC clone RP11-258B17 from 2, comple... 46 0.083
9gb|AC149290.1| Solanum demissum chromosome 5 clone PGEC093P17 ma... 44 0.33
10gb|AC120869.12| Mus musculus chromosome 9, clone RP23-128A11, co... 42 1.3
11ref|XM_980200.1| PREDICTED: Mus musculus myosin IXa, transcript ... 40 5.1
12ref|XM_980277.1| PREDICTED: Mus musculus myosin IXa, transcript ... 40 5.1
13ref|XM_980238.1| PREDICTED: Mus musculus myosin IXa, transcript ... 40 5.1
14ref|XM_886170.2| PREDICTED: Mus musculus myosin IXa, transcript ... 40 5.1
15ref|XM_981204.1| PREDICTED: Mus musculus myosin IXa, transcript ... 40 5.1
16ref|XM_925292.2| PREDICTED: Mus musculus myosin IXa, transcript ... 40 5.1
17ref|XM_925286.2| PREDICTED: Mus musculus myosin IXa, transcript ... 40 5.1
18ref|XM_917816.2| PREDICTED: Mus musculus myosin IXa, transcript ... 40 5.1
19gb|AC131749.2| Mus musculus BAC clone RP23-26G8 from 9, complete... 40 5.1
20gb|AF038608.1| Caenorhabditis elegans cosmid C09G12, complete se... 40 5.1
21gb|AC120138.9| Mus musculus chromosome 1, clone RP23-283D3, comp... 40 5.1
22emb|AL831755.9| Human DNA sequence from clone RP13-279N23 on chr... 40 5.1
23emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 40 5.1
24gb|BC096035.1| Mus musculus myosin IXa, mRNA (cDNA clone IMAGE:6... 40 5.1
25gb|AC161107.24| Medicago truncatula clone mth2-192o12, complete ... 40 5.1
26gb|AC135316.15| Medicago truncatula clone mth2-20l8, complete se... 40 5.1
27gb|AC078986.20| Homo sapiens 3q BAC RP11-138N21 (Roswell Park Ca... 40 5.1
28dbj|AK162486.1| Mus musculus 12 days embryo embryonic body betwe... 40 5.1
29dbj|AK029836.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.1
30dbj|AK028873.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 5.1
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
32gb|BC068298.1| Mus musculus myosin IXa, mRNA (cDNA clone IMAGE:3... 40 5.1
33gb|BC046526.1| Mus musculus myosin IXa, mRNA (cDNA clone IMAGE:5... 40 5.1
34emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.1
35emb|AL929585.11| Mouse DNA sequence from clone RP23-97O7 on chro... 40 5.1
36emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on ch... 40 5.1 
>gb|BT017314.1| Zea mays clone EL01N0318C04.c mRNA sequence
          Length = 858

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 182 tcaattcctgcactaacagtatactactcgctcagctatgtacactc 228
           ||||| |||||||||||||||  |||||||||| |||||||||||||
Sbjct: 780 tcaatccctgcactaacagtaccctactcgctctgctatgtacactc 734
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>gb|BT023996.1| Zea mays clone EL01N0406B12 mRNA sequence
          Length = 2032

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 182  tcaattcctgcactaacagtatactactcgctcagctatgtacactc 228
            ||||| |||||||||||||||  |||||||||| |||||||||||||
Sbjct: 1902 tcaatccctgcactaacagtaccctactcgctctgctatgtacactc 1856
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 31/32 (96%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 211      gctcagctatgtacact-ctctcgcttccaaa 241
                ||||||||||||||||| ||||||||||||||
Sbjct: 12680655 gctcagctatgtacactcctctcgcttccaaa 12680624
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 31/32 (96%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                                
Query: 211      gctcagctatgtacact-ctctcgcttccaaa 241
                ||||||||||||||||| ||||||||||||||
Sbjct: 12677418 gctcagctatgtacactcctctcgcttccaaa 12677387
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>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0050D18, complete sequence
          Length = 126350

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 31/32 (96%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 211   gctcagctatgtacact-ctctcgcttccaaa 241
             ||||||||||||||||| ||||||||||||||
Sbjct: 35108 gctcagctatgtacactcctctcgcttccaaa 35077
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>dbj|AK066679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072F16, full
            insert sequence
          Length = 3321

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 31/32 (96%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 211  gctcagctatgtacact-ctctcgcttccaaa 241
            ||||||||||||||||| ||||||||||||||
Sbjct: 3131 gctcagctatgtacactcctctcgcttccaaa 3100
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>dbj|AB042935.1| Oryza sativa (japonica cultivar-group) Os-RelA1 mRNA for chloroplast
            RelA homologue 1, complete cds
          Length = 3335

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 31/32 (96%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 211  gctcagctatgtacact-ctctcgcttccaaa 241
            ||||||||||||||||| ||||||||||||||
Sbjct: 3129 gctcagctatgtacactcctctcgcttccaaa 3098
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>gb|AC079773.8| Homo sapiens BAC clone RP11-258B17 from 2, complete sequence
          Length = 129676

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 341    agccattggtgcttccaaaattgtctc 367
              ||||||||||||||||||| |||||||
Sbjct: 100027 agccattggtgcttccaaatttgtctc 100001
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>gb|AC149290.1| Solanum demissum chromosome 5 clone PGEC093P17 map MAP_LOC, complete
              sequence
          Length = 200238

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 109    agggtaagaaaacgagaagaaa 130
              ||||||||||||||||||||||
Sbjct: 139589 agggtaagaaaacgagaagaaa 139568
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>gb|AC120869.12| Mus musculus chromosome 9, clone RP23-128A11, complete sequence
          Length = 244776

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     acactgaaattccaggacaaa 41
              |||||||||||||||||||||
Sbjct: 198408 acactgaaattccaggacaaa 198428
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>ref|XM_980200.1| PREDICTED: Mus musculus myosin IXa, transcript variant 1 (Myo9a),
            mRNA
          Length = 5357

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 2299 gcttttctttttgtataaac 2318
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>ref|XM_980277.1| PREDICTED: Mus musculus myosin IXa, transcript variant 3 (Myo9a),
            mRNA
          Length = 11711

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 8653 gcttttctttttgtataaac 8672
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>ref|XM_980238.1| PREDICTED: Mus musculus myosin IXa, transcript variant 2 (Myo9a),
            mRNA
          Length = 11963

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 8905 gcttttctttttgtataaac 8924
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>ref|XM_886170.2| PREDICTED: Mus musculus myosin IXa, transcript variant 1 (Myo9a),
            mRNA
          Length = 5357

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 2299 gcttttctttttgtataaac 2318
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>ref|XM_981204.1| PREDICTED: Mus musculus myosin IXa, transcript variant 2 (Myo9a),
            mRNA
          Length = 11963

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 8905 gcttttctttttgtataaac 8924
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>ref|XM_925292.2| PREDICTED: Mus musculus myosin IXa, transcript variant 5 (Myo9a),
            mRNA
          Length = 5357

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 2299 gcttttctttttgtataaac 2318
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>ref|XM_925286.2| PREDICTED: Mus musculus myosin IXa, transcript variant 3 (Myo9a),
            mRNA
          Length = 11711

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 8653 gcttttctttttgtataaac 8672
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>ref|XM_917816.2| PREDICTED: Mus musculus myosin IXa, transcript variant 2 (Myo9a),
            mRNA
          Length = 11963

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 8905 gcttttctttttgtataaac 8924
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>gb|AC131749.2| Mus musculus BAC clone RP23-26G8 from 9, complete sequence
          Length = 234280

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   gcttttctttttgtataaac 177
             ||||||||||||||||||||
Sbjct: 70306 gcttttctttttgtataaac 70325
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>gb|AF038608.1| Caenorhabditis elegans cosmid C09G12, complete sequence
          Length = 41519

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   aaattccaggacaaactcta 46
            ||||||||||||||||||||
Sbjct: 3245 aaattccaggacaaactcta 3226
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>gb|AC120138.9| Mus musculus chromosome 1, clone RP23-283D3, complete sequence
          Length = 216381

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    cacattcaattacacaacta 70
             ||||||||||||||||||||
Sbjct: 93144 cacattcaattacacaacta 93125
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>emb|AL831755.9| Human DNA sequence from clone RP13-279N23 on chromosome 1 Conatains the
             3' end of the TAS1R2 gene for taste receptor, type 1,
             member 2, complete sequence
          Length = 91841

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   agaaaccagcctttatttgg 145
             ||||||||||||||||||||
Sbjct: 35551 agaaaccagcctttatttgg 35532
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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
              complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     caactctcaactagtatatg 97
              ||||||||||||||||||||
Sbjct: 159177 caactctcaactagtatatg 159158
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>gb|BC096035.1| Mus musculus myosin IXa, mRNA (cDNA clone IMAGE:6849802), partial cds
          Length = 3332

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 1925 gcttttctttttgtataaac 1944
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>gb|AC161107.24| Medicago truncatula clone mth2-192o12, complete sequence
          Length = 106909

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ctgcacattcaattacacaa 67
             ||||||||||||||||||||
Sbjct: 29440 ctgcacattcaattacacaa 29459



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ctgcacattcaattacacaa 67
             ||||||||||||||||||||
Sbjct: 18943 ctgcacattcaattacacaa 18962
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>gb|AC135316.15| Medicago truncatula clone mth2-20l8, complete sequence
          Length = 127653

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ctgcacattcaattacacaa 67
              ||||||||||||||||||||
Sbjct: 122944 ctgcacattcaattacacaa 122963



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ctgcacattcaattacacaa 67
              ||||||||||||||||||||
Sbjct: 112446 ctgcacattcaattacacaa 112465
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>gb|AC078986.20| Homo sapiens 3q BAC RP11-138N21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166518

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aactctagctgcacattcaa 59
             ||||||||||||||||||||
Sbjct: 49057 aactctagctgcacattcaa 49076
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>dbj|AK162486.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430090I05 product:hypothetical protein, full
            insert sequence
          Length = 4099

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 1043 gcttttctttttgtataaac 1062
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>dbj|AK029836.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4931409E17 product:CDNA FLJ11061 FIS,
            CLONE PLACE1004777, WEAKLY SIMILAR TO N-CHIMAERIN homolog
            [Homo sapiens], full insert sequence
          Length = 5777

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 2729 gcttttctttttgtataaac 2748
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>dbj|AK028873.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732465J09 product:MYOSIN-IXA homolog
            [Homo sapiens], full insert sequence
          Length = 3414

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 2865 gcttttctttttgtataaac 2884
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 78       caactctcaactagtatatg 97
                ||||||||||||||||||||
Sbjct: 34247795 caactctcaactagtatatg 34247776
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>gb|BC068298.1| Mus musculus myosin IXa, mRNA (cDNA clone IMAGE:30459210)
          Length = 4771

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 3297 gcttttctttttgtataaac 3316
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>gb|BC046526.1| Mus musculus myosin IXa, mRNA (cDNA clone IMAGE:5137392), partial cds
          Length = 2541

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gcttttctttttgtataaac 177
            ||||||||||||||||||||
Sbjct: 1978 gcttttctttttgtataaac 1997
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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    caactctcaactagtatatg 97
             ||||||||||||||||||||
Sbjct: 30409 caactctcaactagtatatg 30390
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>emb|AL929585.11| Mouse DNA sequence from clone RP23-97O7 on chromosome 4, complete
              sequence
          Length = 246011

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    catctgccttcatgctgcct 290
              ||||||||||||||||||||
Sbjct: 229511 catctgccttcatgctgcct 229492
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>emb|AL807385.11| Mouse DNA sequence from clone RP23-143B14 on chromosome 4, complete
              sequence
          Length = 221319

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    cccaaaacatttcagccatt 347
              ||||||||||||||||||||
Sbjct: 145725 cccaaaacatttcagccatt 145744


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,061,193
Number of Sequences: 3902068
Number of extensions: 4061193
Number of successful extensions: 65707
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 65600
Number of HSP's gapped (non-prelim): 112
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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