Clone Name | rbastl26e02 |
---|---|
Clone Library Name | barley_pub |
>NFYA9_ARATH (Q945M9) Nuclear transcription factor Y subunit A-9 (AtNF-YA-9)| Length = 303 Score = 31.2 bits (69), Expect = 1.1 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Frame = +1 Query: 85 KHPCSRSSANNILRKSQATQNSVLAAT-SARSQEQRHHSFPNPQARLRHTSRNLHSFLPK 261 K P +R N + ++SQ T + A S ++QE HH P + + + Sbjct: 68 KSPSNRD--NTVNKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLVGHTV-GWASS 124 Query: 262 KNIQNPRLNFTVIVLG*HPRKAEDLASVPYGDRPRVELPL 381 Q+P + G HP L VPYG P +PL Sbjct: 125 NPYQDPYYAGVMGAYGHHP-----LGFVPYGGMPHSRMPL 159
>LYS1_SCHPO (Q09694) Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC| 1.5.1.7) (Lysine--2-oxoglutarate reductase) (SDH) Length = 368 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = +1 Query: 199 FPNPQARLRHTSRNLHSFLPKKNIQNPRLNFTVIVLG*HPRKAEDLAS 342 FPN ++ +RH +R + L K N Q PR+ + LG A DLAS Sbjct: 168 FPNEKSLVRHVARQVRLALKKNNNQYPRI-LVIGALGRCGTGACDLAS 214
>ZC3H3_MOUSE (Q8CHP0) Zinc finger CCCH-type domain-containing protein 3| Length = 950 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +1 Query: 91 PCSRSSANNILRKSQATQNSVLAATSARSQEQRHHSFPNPQARLRHTSRNLHS 249 P S++SA ++LRK TQ SV +S + + P P R+ ++ L S Sbjct: 815 PRSKASAGHVLRKPTTTQRSVRQMSSGLASGAEAPASPPPSPRVLASTSTLSS 867
>NK2R_BOVIN (P05363) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2| receptor) (NK-2R) (Tachykinin receptor 2) Length = 384 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Frame = -1 Query: 271 ECF-SLARTNEGFWKCAEAGPGDWGS-----CDVFVLGFLQTLPLARYFVLLAIYGV 119 +CF S T+EG KC A P D G + V+ + LPL FV ++ G+ Sbjct: 166 QCFYSTITTDEGATKCVVAWPEDSGGKMLLLYHLIVIALIYFLPLVVMFVAYSVIGL 222
>NRAM1_MOUSE (P41251) Natural resistance-associated macrophage protein 1 (NRAMP| 1) Length = 548 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 8/42 (19%) Frame = -1 Query: 187 FVLGFLQTLPLARYFVLLAIYGVYYL--------RCCDYRGA 86 FV+ +L +LP YF L+A++ + YL CC GA Sbjct: 480 FVISYLPSLPHPAYFGLVALFAIGYLGLTAYLAWTCCIAHGA 521
>CBIT_SULTO (Q96ZL5) Probable cobalt-precorrin-6Y C(15)-methyltransferase| [decarboxylating] (EC 2.1.1.-) Length = 192 Score = 28.5 bits (62), Expect = 7.1 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Frame = +1 Query: 253 LPKKNIQNPRLNFTVIVLG*HPRKAE----DLASVPYGDRPRVELPLRHADLELDQAGAV 420 L KKN++ +LN VI+ G P + ++ ++ G R+E L +D +L G + Sbjct: 76 LTKKNVEKFKLNNVVIIEGEAPEALDHVDSEVDAIFIGGTERLEEILLSSDKKLKNGGRI 135 Query: 421 VV 426 V+ Sbjct: 136 VI 137
>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)| Length = 866 Score = 23.5 bits (49), Expect(2) = 8.5 Identities = 18/45 (40%), Positives = 22/45 (48%) Frame = +3 Query: 213 GPASAHFQKPSFVLAKEKHSEPPSELYCNSARITPS*GRRSCLST 347 GPAS H S + HS P S C+SA + S RSC S+ Sbjct: 232 GPASNHNTSSSSPSSSAAHSSPDSG--CSSA--SSSGSSRSCGSS 272 Score = 23.1 bits (48), Expect(2) = 8.5 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +1 Query: 127 KSQATQNSVLAATSARSQEQRHHSFPNPQ 213 ++ A SV A+ S + Q+QR H+ Q Sbjct: 167 RTSALAESVAASLSPQQQQQRQHTHQQQQ 195
>NRAM1_CANFA (Q9XT74) Natural resistance-associated macrophage protein 1 (NRAMP| 1) Length = 547 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -1 Query: 187 FVLGFLQTLPLARYFVLLAIYGVYYLRCCDY 95 FV+ +L +LP YF+L+A+ + YL Y Sbjct: 480 FVVIYLPSLPHPAYFILVALLAIVYLGLTTY 510
>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) Length = 2365 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 7/33 (21%) Frame = +1 Query: 172 RSQEQRHHSFPNPQARLR-------HTSRNLHS 249 R + +R +FPNP+A+ R HT R++HS Sbjct: 1591 RLERRRRSTFPNPEAQRRPYYADYSHTRRSIHS 1623
>STX5_DROME (Q24509) Syntaxin-5 (Sed5 protein) (dSed5)| Length = 467 Score = 28.1 bits (61), Expect = 9.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 171 KKPRTKTSQLPQSPGPASAHFQKPS 245 K+ +T+ Q Q PGP +AH PS Sbjct: 309 KQQKTRRDQFSQGPGPLAAHTVSPS 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,339,733 Number of Sequences: 219361 Number of extensions: 1242266 Number of successful extensions: 3812 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3724 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3810 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)