ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NFYA9_ARATH (Q945M9) Nuclear transcription factor Y subunit A-9 ... 31 1.1
2LYS1_SCHPO (Q09694) Saccharopine dehydrogenase [NAD+, L-lysine-f... 30 2.4
3ZC3H3_MOUSE (Q8CHP0) Zinc finger CCCH-type domain-containing pro... 30 2.4
4NK2R_BOVIN (P05363) Substance-K receptor (SKR) (Neurokinin A rec... 29 5.4
5NRAM1_MOUSE (P41251) Natural resistance-associated macrophage pr... 29 5.4
6CBIT_SULTO (Q96ZL5) Probable cobalt-precorrin-6Y C(15)-methyltra... 28 7.1
7E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78) 23 8.5
8NRAM1_CANFA (Q9XT74) Natural resistance-associated macrophage pr... 28 9.2
9CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel al... 28 9.2
10STX5_DROME (Q24509) Syntaxin-5 (Sed5 protein) (dSed5) 28 9.2

>NFYA9_ARATH (Q945M9) Nuclear transcription factor Y subunit A-9 (AtNF-YA-9)|
          Length = 303

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
 Frame = +1

Query: 85  KHPCSRSSANNILRKSQATQNSVLAAT-SARSQEQRHHSFPNPQARLRHTSRNLHSFLPK 261
           K P +R   N + ++SQ T +   A   S ++QE  HH    P    +     +  +   
Sbjct: 68  KSPSNRD--NTVNKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLVGHTV-GWASS 124

Query: 262 KNIQNPRLNFTVIVLG*HPRKAEDLASVPYGDRPRVELPL 381
              Q+P     +   G HP     L  VPYG  P   +PL
Sbjct: 125 NPYQDPYYAGVMGAYGHHP-----LGFVPYGGMPHSRMPL 159



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>LYS1_SCHPO (Q09694) Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC|
           1.5.1.7) (Lysine--2-oxoglutarate reductase) (SDH)
          Length = 368

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 199 FPNPQARLRHTSRNLHSFLPKKNIQNPRLNFTVIVLG*HPRKAEDLAS 342
           FPN ++ +RH +R +   L K N Q PR+   +  LG     A DLAS
Sbjct: 168 FPNEKSLVRHVARQVRLALKKNNNQYPRI-LVIGALGRCGTGACDLAS 214



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>ZC3H3_MOUSE (Q8CHP0) Zinc finger CCCH-type domain-containing protein 3|
          Length = 950

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 91  PCSRSSANNILRKSQATQNSVLAATSARSQEQRHHSFPNPQARLRHTSRNLHS 249
           P S++SA ++LRK   TQ SV   +S  +      + P P  R+  ++  L S
Sbjct: 815 PRSKASAGHVLRKPTTTQRSVRQMSSGLASGAEAPASPPPSPRVLASTSTLSS 867



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>NK2R_BOVIN (P05363) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 384

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -1

Query: 271 ECF-SLARTNEGFWKCAEAGPGDWGS-----CDVFVLGFLQTLPLARYFVLLAIYGV 119
           +CF S   T+EG  KC  A P D G        + V+  +  LPL   FV  ++ G+
Sbjct: 166 QCFYSTITTDEGATKCVVAWPEDSGGKMLLLYHLIVIALIYFLPLVVMFVAYSVIGL 222



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>NRAM1_MOUSE (P41251) Natural resistance-associated macrophage protein 1 (NRAMP|
           1)
          Length = 548

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
 Frame = -1

Query: 187 FVLGFLQTLPLARYFVLLAIYGVYYL--------RCCDYRGA 86
           FV+ +L +LP   YF L+A++ + YL         CC   GA
Sbjct: 480 FVISYLPSLPHPAYFGLVALFAIGYLGLTAYLAWTCCIAHGA 521



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>CBIT_SULTO (Q96ZL5) Probable cobalt-precorrin-6Y C(15)-methyltransferase|
           [decarboxylating] (EC 2.1.1.-)
          Length = 192

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +1

Query: 253 LPKKNIQNPRLNFTVIVLG*HPRKAE----DLASVPYGDRPRVELPLRHADLELDQAGAV 420
           L KKN++  +LN  VI+ G  P   +    ++ ++  G   R+E  L  +D +L   G +
Sbjct: 76  LTKKNVEKFKLNNVVIIEGEAPEALDHVDSEVDAIFIGGTERLEEILLSSDKKLKNGGRI 135

Query: 421 VV 426
           V+
Sbjct: 136 VI 137



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>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)|
          Length = 866

 Score = 23.5 bits (49), Expect(2) = 8.5
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 213 GPASAHFQKPSFVLAKEKHSEPPSELYCNSARITPS*GRRSCLST 347
           GPAS H    S   +   HS P S   C+SA  + S   RSC S+
Sbjct: 232 GPASNHNTSSSSPSSSAAHSSPDSG--CSSA--SSSGSSRSCGSS 272



 Score = 23.1 bits (48), Expect(2) = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 127 KSQATQNSVLAATSARSQEQRHHSFPNPQ 213
           ++ A   SV A+ S + Q+QR H+    Q
Sbjct: 167 RTSALAESVAASLSPQQQQQRQHTHQQQQ 195



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>NRAM1_CANFA (Q9XT74) Natural resistance-associated macrophage protein 1 (NRAMP|
           1)
          Length = 547

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 187 FVLGFLQTLPLARYFVLLAIYGVYYLRCCDY 95
           FV+ +L +LP   YF+L+A+  + YL    Y
Sbjct: 480 FVVIYLPSLPHPAYFILVALLAIVYLGLTTY 510



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>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.2)
          Length = 2365

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
 Frame = +1

Query: 172  RSQEQRHHSFPNPQARLR-------HTSRNLHS 249
            R + +R  +FPNP+A+ R       HT R++HS
Sbjct: 1591 RLERRRRSTFPNPEAQRRPYYADYSHTRRSIHS 1623



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>STX5_DROME (Q24509) Syntaxin-5 (Sed5 protein) (dSed5)|
          Length = 467

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 171 KKPRTKTSQLPQSPGPASAHFQKPS 245
           K+ +T+  Q  Q PGP +AH   PS
Sbjct: 309 KQQKTRRDQFSQGPGPLAAHTVSPS 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,339,733
Number of Sequences: 219361
Number of extensions: 1242266
Number of successful extensions: 3812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3810
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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