ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26d12 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 77.8 bits (190), Expect = 6e-15 Identities = 41/55 (74%), Positives = 41/55 (74%) Frame = -1 Query: 404 FPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 240 FPRHKERLDRKVVDVAREVAKMEVPSYRRHL DIPLVSVYFR Sbjct: 997 FPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 77.8 bits (190), Expect = 6e-15 Identities = 41/55 (74%), Positives = 41/55 (74%) Frame = -1 Query: 404 FPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 240 FPRHKERLDRKVVDVAREVAKMEVPSYRRHL DIPLVSVYFR Sbjct: 997 FPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 65.1 bits (157), Expect = 4e-11 Identities = 33/55 (60%), Positives = 38/55 (69%) Frame = -1 Query: 404 FPRHKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 240 F RHK+RL +KVVD+AREVAK++VP YRRHL DIPLVSVYFR Sbjct: 999 FARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053
>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 398 Score = 30.8 bits (68), Expect = 0.80 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +2 Query: 329 RAPPSWPPPWQHQLP 373 + PP WPPPW Q+P Sbjct: 112 KGPPDWPPPWGVQMP 126
>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific protease 2) Length = 984 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/83 (25%), Positives = 36/83 (43%) Frame = +3 Query: 147 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDIVVIVILTGHHDVEMTPV 326 +LT++NAT S + S+ E + +DIV I L + E+ + Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353 Query: 327 RGHLHLGHLPGNINYLSVKPFLV 395 + GH GN + +S +P +V Sbjct: 354 EKPILRGHNEGNQSLISAEPIVV 376
>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 654 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 264 DVDIVVIVILTGHHDVEMTPVRGHLHLG 347 D+DI+ + I GH V + VRG HLG Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295
>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD| Length = 311 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 270 DIVVIVILTGHHDVEMTPVRGHLHLGHL 353 D+ VI L GH D+ T + HLH HL Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294
>ACUC_BACSU (P39067) Acetoin utilization protein acuC| Length = 387 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +2 Query: 317 DAGKRAPPSWPPPWQHQLPFCQAVPCAW 400 D G PP W WQ Q P A+P +W Sbjct: 323 DPGHEIPPEWIVKWQKQCPV--ALPSSW 348
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = -1 Query: 392 KERLDRKVVDVAREVAKMEVPSYRRHL 312 K+RL K+ + +EV+K EVPS+ ++L Sbjct: 156 KDRLGLKLTSLIKEVSKKEVPSHVKNL 182
>YCAI_ECOLI (P37443) Hypothetical protein ycaI| Length = 754 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -2 Query: 367 LMLPGRWPRWRCPLTGVI 314 + LPGRW W+ PL G I Sbjct: 248 IFLPGRWIHWQIPLIGGI 265
>FUT4_RAT (Q62994) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 433 Score = 27.7 bits (60), Expect = 6.8 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = +2 Query: 329 RAPPSWPPPWQHQ 367 + PP WPPPW Q Sbjct: 145 KGPPDWPPPWGAQ 157
>TX13B_HUMAN (Q9BXU2) Testis-expressed sequence 13B protein| Length = 312 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/49 (26%), Positives = 23/49 (46%) Frame = +1 Query: 94 HRDGRKENQSVMWLKPPLSLQSLMQLMTCQSIRHDQPQDHVNTDEALLQ 240 HR G+ +N+ V WL+ L L+ ++ + Q + +EA Q Sbjct: 80 HRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEMECNEATFQ 128
>YBI6_YEAST (P38177) Protein YBL086C| Length = 466 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Frame = +3 Query: 285 VILTGHHDVEMTPVRG---HLHLGHLPGNINYLSVKPFLV 395 V L G H T RG H+H+ H NY KP LV Sbjct: 50 VALDGEHQTTSTQSRGTTKHVHVQHHRAQWNYSLDKPILV 89
>IF4E2_ARATH (O04663) Eukaryotic translation initiation factor 4E-2 (eIF4E-2)| (eIF-4E-2) (mRNA cap-binding protein) (eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit) (eIF4Eiso protein) (eIF(iso)4E) Length = 198 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -1 Query: 86 DHWGLIWSCYQTSRFTRHAQHHL 18 D WGL + +QTS+ T +A+ HL Sbjct: 61 DFWGLHETIFQTSKLTANAEIHL 83
>FUT4_PANTR (Q659K9) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 405 Score = 27.3 bits (59), Expect = 8.9 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +2 Query: 329 RAPPSWPPPW 358 + PP WPPPW Sbjct: 119 KGPPDWPPPW 128
>FUT4_HUMAN (P22083) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) (ELAM-1 ligand fucosyltransferase) Length = 405 Score = 27.3 bits (59), Expect = 8.9 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +2 Query: 329 RAPPSWPPPW 358 + PP WPPPW Sbjct: 119 KGPPDWPPPW 128
>UVRC_RALEJ (Q46Z26) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 663 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 261 RDVDIVVIVILTGHHDVEMTPVRGHLHLG 347 RD+D++ + + G V + VRG HLG Sbjct: 267 RDIDVLAVAVEGGRACVNLAMVRGGRHLG 295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,363,824 Number of Sequences: 219361 Number of extensions: 942413 Number of successful extensions: 2602 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2513 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2600 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
