Clone Name | rbastl26d10 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107504.1| Zea mays PCO076481 mRNA sequence Length = 832 Score = 192 bits (97), Expect = 6e-46 Identities = 127/137 (92%) Strand = Plus / Minus Query: 272 gcgccgaggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtcacctcc 331 ||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 579 gcgccaaggtaagacgccagccgcaggatgtcgcagaagacgccacccgcagtcacctcc 520 Query: 332 gcgcccgcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaagtggtgaag 391 |||||||||||||| || |||||||| || |||||||||||||||||||| |||||||| Sbjct: 519 gcgcccgcgcctgggccccgcacgattagcggctgctccttgtacctcgaggtggtgaat 460 Query: 392 gcgatgatgttgtcgga 408 ||||||||||||||||| Sbjct: 459 gcgatgatgttgtcgga 443
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 188 bits (95), Expect = 1e-44 Identities = 122/131 (93%) Strand = Plus / Plus Query: 278 aggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtcacctccgcgccc 337 |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 6941170 aggtaggacgccagccgcaggatgtcgcagaagacgccaccggcggtgacctccgcgccg 6941229 Query: 338 gcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaagtggtgaaggcgatg 397 ||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 6941230 gcgccggggcctcgcacgatcagcggctgctccttgtacctcgacgtggtgaaggcgatg 6941289 Query: 398 atgttgtcgga 408 ||||||||||| Sbjct: 6941290 atgttgtcgga 6941300
>dbj|AP005839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0044K01 Length = 160643 Score = 188 bits (95), Expect = 1e-44 Identities = 122/131 (93%) Strand = Plus / Plus Query: 278 aggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtcacctccgcgccc 337 |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 12341 aggtaggacgccagccgcaggatgtcgcagaagacgccaccggcggtgacctccgcgccg 12400 Query: 338 gcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaagtggtgaaggcgatg 397 ||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 12401 gcgccggggcctcgcacgatcagcggctgctccttgtacctcgacgtggtgaaggcgatg 12460 Query: 398 atgttgtcgga 408 ||||||||||| Sbjct: 12461 atgttgtcgga 12471
>dbj|AK068391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146N15, full insert sequence Length = 3120 Score = 188 bits (95), Expect = 1e-44 Identities = 122/131 (93%) Strand = Plus / Minus Query: 278 aggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtcacctccgcgccc 337 |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 2817 aggtaggacgccagccgcaggatgtcgcagaagacgccaccggcggtgacctccgcgccg 2758 Query: 338 gcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaagtggtgaaggcgatg 397 ||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 2757 gcgccggggcctcgcacgatcagcggctgctccttgtacctcgacgtggtgaaggcgatg 2698 Query: 398 atgttgtcgga 408 ||||||||||| Sbjct: 2697 atgttgtcgga 2687
>dbj|AK066685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071M24, full insert sequence Length = 2328 Score = 188 bits (95), Expect = 1e-44 Identities = 122/131 (93%) Strand = Plus / Minus Query: 278 aggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtcacctccgcgccc 337 |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 2034 aggtaggacgccagccgcaggatgtcgcagaagacgccaccggcggtgacctccgcgccg 1975 Query: 338 gcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaagtggtgaaggcgatg 397 ||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 1974 gcgccggggcctcgcacgatcagcggctgctccttgtacctcgacgtggtgaaggcgatg 1915 Query: 398 atgttgtcgga 408 ||||||||||| Sbjct: 1914 atgttgtcgga 1904
>dbj|D78573.1|RICAKHD Rice mRNA for aspartate kinase-homoserine dehydrogenase, complete cds Length = 3061 Score = 188 bits (95), Expect = 1e-44 Identities = 122/131 (93%) Strand = Plus / Minus Query: 278 aggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtcacctccgcgccc 337 |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 2784 aggtaggacgccagccgcaggatgtcgcagaagacgccaccggcggtgacctccgcgccg 2725 Query: 338 gcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaagtggtgaaggcgatg 397 ||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 2724 gcgccggggcctcgcacgatcagcggctgctccttgtacctcgacgtggtgaaggcgatg 2665 Query: 398 atgttgtcgga 408 ||||||||||| Sbjct: 2664 atgttgtcgga 2654
>gb|L33913.1|MZEAKHDA Zea mays (clone pAKHSDH2) aspartate kinase-homoserine dehydrogenase mRNA, complete cds Length = 3045 Score = 170 bits (86), Expect = 2e-39 Identities = 122/134 (91%) Strand = Plus / Minus Query: 275 ccgaggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtcacctccgcg 334 |||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct: 2784 ccgaggtaagacgccagccgcagaatgtcgcagaagacgccaccggctgtcacctccgcg 2725 Query: 335 cccgcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaagtggtgaaggcg 394 || || || || || ||||||||||| ||||||||||||||||| || |||||||||||| Sbjct: 2724 ccggcacccggaccccgcacgatcagcggctgctccttgtacctggacgtggtgaaggcg 2665 Query: 395 atgatgttgtcgga 408 |||||||||||||| Sbjct: 2664 atgatgttgtcgga 2651
>gb|L33912.1|MZEAKHD Zea mays (clone pAKHSDH1) aspartate kinase-homoserine dehydrogenase mRNA, complete cds Length = 3178 Score = 149 bits (75), Expect = 8e-33 Identities = 126/143 (88%) Strand = Plus / Minus Query: 266 gagggggcgccgaggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtc 325 |||||||| || |||||||| | ||| ||||| |||||||||||||||||||| |||||| Sbjct: 2800 gagggggcaccaaggtaggaagacaggcgcagtatgtcgcagaagacgcctcctgcagtc 2741 Query: 326 acctccgcgcccgcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaagtg 385 || ||||| || || || || || ||||||||||||||||| |||||||||||||| ||| Sbjct: 2740 acttccgcaccagcccccggaccacgcacgatcagtggctgatccttgtacctcgaggtg 2681 Query: 386 gtgaaggcgatgatgttgtcgga 408 |||||||| |||||||||||||| Sbjct: 2680 gtgaaggctatgatgttgtcgga 2658
>gb|AY111528.1| Zea mays CL2353_1 mRNA sequence Length = 3153 Score = 141 bits (71), Expect = 2e-30 Identities = 116/131 (88%) Strand = Plus / Minus Query: 278 aggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtcacctccgcgccc 337 |||||||| | ||| ||||| |||||||||||||||||||| |||||||| ||||| || Sbjct: 2788 aggtaggaagacaggcgcagtatgtcgcagaagacgcctcctgcagtcacttccgcacca 2729 Query: 338 gcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaagtggtgaaggcgatg 397 || || || || ||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct: 2728 gccccgggacctcgcacgatcagtggctgatccttgtacctcgaggtggtgaaggctatg 2669 Query: 398 atgttgtcgga 408 ||||||||||| Sbjct: 2668 atgttgtcgga 2658
>ref|XM_481775.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2766 Score = 115 bits (58), Expect = 1e-22 Identities = 124/146 (84%) Strand = Plus / Minus Query: 263 tatgagggggcgccgaggtaggacgccagccgcaggatgtcgcagaagacgcctccggca 322 |||||||| ||||| |||||||| |||||||| || ||||| | |||||| ||||| || Sbjct: 2765 tatgagggagcgcctaggtaggaggccagccgtagtatgtcactgaagacacctcctgcg 2706 Query: 323 gtcacctccgcgcccgcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaa 382 |||||||| || || ||||| || || ||||||||||| || ||||||||||| || || Sbjct: 2705 gtcacctctgcaccggcgcccgggcctcgcacgatcagcggttgctccttgtatcttgac 2646 Query: 383 gtggtgaaggcgatgatgttgtcgga 408 || ||||||||||||||||||||||| Sbjct: 2645 gtcgtgaaggcgatgatgttgtcgga 2620
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 115 bits (58), Expect = 1e-22 Identities = 124/146 (84%) Strand = Plus / Plus Query: 263 tatgagggggcgccgaggtaggacgccagccgcaggatgtcgcagaagacgcctccggca 322 |||||||| ||||| |||||||| |||||||| || ||||| | |||||| ||||| || Sbjct: 15432425 tatgagggagcgcctaggtaggaggccagccgtagtatgtcactgaagacacctcctgcg 15432484 Query: 323 gtcacctccgcgcccgcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaa 382 |||||||| || || ||||| || || ||||||||||| || ||||||||||| || || Sbjct: 15432485 gtcacctctgcaccggcgcccgggcctcgcacgatcagcggttgctccttgtatcttgac 15432544 Query: 383 gtggtgaaggcgatgatgttgtcgga 408 || ||||||||||||||||||||||| Sbjct: 15432545 gtcgtgaaggcgatgatgttgtcgga 15432570
>dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1790_D02 Length = 162928 Score = 115 bits (58), Expect = 1e-22 Identities = 124/146 (84%) Strand = Plus / Plus Query: 263 tatgagggggcgccgaggtaggacgccagccgcaggatgtcgcagaagacgcctccggca 322 |||||||| ||||| |||||||| |||||||| || ||||| | |||||| ||||| || Sbjct: 118001 tatgagggagcgcctaggtaggaggccagccgtagtatgtcactgaagacacctcctgcg 118060 Query: 323 gtcacctccgcgcccgcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaa 382 |||||||| || || ||||| || || ||||||||||| || ||||||||||| || || Sbjct: 118061 gtcacctctgcaccggcgcccgggcctcgcacgatcagcggttgctccttgtatcttgac 118120 Query: 383 gtggtgaaggcgatgatgttgtcgga 408 || ||||||||||||||||||||||| Sbjct: 118121 gtcgtgaaggcgatgatgttgtcgga 118146
>dbj|AK073790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067A07, full insert sequence Length = 2472 Score = 99.6 bits (50), Expect = 7e-18 Identities = 123/146 (84%), Gaps = 1/146 (0%) Strand = Plus / Minus Query: 263 tatgagggggcgccgaggtaggacgccagccgcaggatgtcgcagaagacgcctccggca 322 |||||||| ||||| |||||||| |||||||| || ||||| | |||||| ||||| || Sbjct: 2289 tatgagggagcgcctaggtaggaggccagccgtagtatgtcactgaagacacctcctgcg 2230 Query: 323 gtcacctccgcgcccgcgcctggcccgcgcacgatcagtggctgctccttgtacctcgaa 382 |||||||| || || ||||| || || ||| ||||||| || ||||||||||| || || Sbjct: 2229 gtcacctctgcaccggcgcccgggcctcgc-cgatcagcggttgctccttgtatcttgac 2171 Query: 383 gtggtgaaggcgatgatgttgtcgga 408 || ||||||||||||||||||||||| Sbjct: 2170 gtcgtgaaggcgatgatgttgtcgga 2145
>gb|AY111338.1| Zea mays CL2352_-1 mRNA sequence Length = 3045 Score = 79.8 bits (40), Expect = 6e-12 Identities = 49/52 (94%) Strand = Plus / Minus Query: 357 tcagtggctgctccttgtacctcgaagtggtgaaggcgatgatgttgtcgga 408 |||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 2702 tcagcggctgctccttgtacctggacgtggtgaaggcgatgatgttgtcgga 2651 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 275 ccgaggtaggacgccagccgcaggatgtcgcagaagacgcctccggcagtcacc 328 |||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| Sbjct: 2784 ccgaggtaagacgccagccgcagaatgtcgcagaagacgccaccggctgtcacc 2731
>gb|AC007035.3| Homo sapiens BAC clone RP11-104I19 from 7, complete sequence Length = 180397 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatcttatttgctt 153 ||||||||||||||| ||||||||||| Sbjct: 106272 aaacaaaacaaaacaccttatttgctt 106298
>gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, complete sequence Length = 168316 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 127 aaacaaaacaaaacatcttatt 148 |||||||||||||||||||||| Sbjct: 91146 aaacaaaacaaaacatcttatt 91125
>gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, complete sequence Length = 167209 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatcttatt 148 |||||||||||||||||||||| Sbjct: 50188 aaacaaaacaaaacatcttatt 50209
>emb|AL606974.9| Mouse DNA sequence from clone RP23-39E21 on chromosome 4, complete sequence Length = 232587 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 120 cactggcaaacaaaacaaaaca 141 |||||||||||||||||||||| Sbjct: 224766 cactggcaaacaaaacaaaaca 224787
>ref|NG_001334.1| Homo sapiens growth hormone locus (GH@) on chromosome 17 Length = 55000 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 ttttttattattgcactgataattc 42 |||||||||||| |||||||||||| Sbjct: 32961 ttttttattattacactgataattc 32937 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 tttttattattgcactgataattc 42 ||||||||||| |||||||||||| Sbjct: 18210 tttttattattacactgataattc 18187
>gb|AC120393.16| Mus musculus chromosome 7, clone RP24-312B12, complete sequence Length = 183977 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 118 cacactggcaaacaaaacaaaacat 142 ||||||| ||||||||||||||||| Sbjct: 4688 cacactgacaaacaaaacaaaacat 4664
>dbj|AK155956.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830002B03 product:sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) D, full insert sequence Length = 4140 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 caaacaaaacaaaacatctta 146 ||||||||||||||||||||| Sbjct: 2734 caaacaaaacaaaacatctta 2754
>gb|AC040958.20| Homo sapiens chromosome 17, clone RP11-630H24, complete sequence Length = 26211 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 18 ttttttattattgcactgataattc 42 |||||||||||| |||||||||||| Sbjct: 21758 ttttttattattacactgataattc 21782
>gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, complete sequence Length = 188353 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatcttat 147 ||||||||||||||||||||| Sbjct: 86112 aaacaaaacaaaacatcttat 86132
>gb|AC127029.12| Homo sapiens chromosome 17, clone CTC-264K15, complete sequence Length = 101990 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 18 ttttttattattgcactgataattc 42 |||||||||||| |||||||||||| Sbjct: 145 ttttttattattacactgataattc 169 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 tttttattattgcactgataattc 42 ||||||||||| |||||||||||| Sbjct: 14914 tttttattattacactgataattc 14937
>gb|AC125468.5| Mus musculus BAC clone RP24-113D21 from 7, complete sequence Length = 197913 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 118 cacactggcaaacaaaacaaaacat 142 ||||||| ||||||||||||||||| Sbjct: 132152 cacactgacaaacaaaacaaaacat 132128
>emb|AL772271.11| Mouse DNA sequence from clone RP23-17P12 on chromosome 2, complete sequence Length = 204136 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 caaacaaaacaaaacatctta 146 ||||||||||||||||||||| Sbjct: 11157 caaacaaaacaaaacatctta 11177
>emb|AL807745.7| Mouse DNA sequence from clone RP23-20E10 on chromosome 4, complete sequence Length = 218691 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 actggcaaacaaaacaaaaca 141 ||||||||||||||||||||| Sbjct: 98953 actggcaaacaaaacaaaaca 98933
>gb|J03071.1|HUMGHCSA Human growth hormone (GH-1 and GH-2) and chorionic somatomammotropin (CS-1, CS-2 and CS-5) genes, complete cds Length = 66495 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 18 ttttttattattgcactgataattc 42 |||||||||||| |||||||||||| Sbjct: 32962 ttttttattattacactgataattc 32938 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 tttttattattgcactgataattc 42 ||||||||||| |||||||||||| Sbjct: 18210 tttttattattacactgataattc 18187
>gb|AC102140.15| Mus musculus chromosome 3, clone RP23-286J21, complete sequence Length = 192833 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 43556 ctggcaaacaaaacaaaaca 43537
>gb|AC102907.11| Mus musculus chromosome 1, clone RP24-291E1, complete sequence Length = 185121 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gaacagcacactggcaaaca 131 |||||||||||||||||||| Sbjct: 116300 gaacagcacactggcaaaca 116319
>ref|XM_526750.1| PREDICTED: Pan troglodytes similar to 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) (LOC471368), mRNA Length = 1053 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 487 ctggcaaacaaaacaaaaca 506
>gb|AY868413.1| Uncultured Bacteroidetes bacterium clone G50-0035 16S ribosomal RNA gene, partial sequence Length = 451 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 agtggctgctccttgtacct 378 |||||||||||||||||||| Sbjct: 178 agtggctgctccttgtacct 159
>gb|AC115777.16| Mus musculus chromosome 6, clone RP23-139O6, complete sequence Length = 216399 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 73922 aaacaaaacaaaacatctta 73941
>gb|AC129332.6| Mus musculus BAC clone RP23-91I19 from chromosome 9, complete sequence Length = 219117 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 170146 ctggcaaacaaaacaaaaca 170165
>gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome 7, complete sequence Length = 208880 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 197574 aaacaaaacaaaacatctta 197593
>gb|AC079216.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-353E8, complete sequence Length = 221748 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 aaacaaaacaaaacatcttatttg 150 ||||||||||||||||||| |||| Sbjct: 207088 aaacaaaacaaaacatcttctttg 207065
>gb|DQ002803.1| Macaca mulatta chorionic somatommamotropin hormone 3 (CSH-3) and chorionic somatommamotropin hormone 4 (CSH-4) genes, complete cds Length = 16512 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 tttttattattgcactgataattc 42 ||||||||||| |||||||||||| Sbjct: 5864 tttttattattacactgataattc 5841
>gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, complete sequence Length = 205816 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 31001 ctggcaaacaaaacaaaaca 30982
>gb|AC164304.2| Mus musculus BAC clone RP23-261B24 from chromosome 14, complete sequence Length = 184690 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 aaacaaaacaaaacatcttatttg 150 ||||||||||||||||||| |||| Sbjct: 181651 aaacaaaacaaaacatcttgtttg 181628
>gb|AC166939.2| Mus musculus BAC clone RP23-72K19 from chromosome 8, complete sequence Length = 236510 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 72776 ctggcaaacaaaacaaaaca 72795
>gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, complete sequence Length = 207763 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 caaacaaaacaaaacatctt 145 |||||||||||||||||||| Sbjct: 88157 caaacaaaacaaaacatctt 88138
>emb|CT030685.6| Mouse DNA sequence from clone RP24-284M15 on chromosome 9, complete sequence Length = 171996 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 147044 ctggcaaacaaaacaaaaca 147063
>ref|XM_390261.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10085.1) partial mRNA Length = 1074 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 actggcaaacaaaacaaaac 140 |||||||||||||||||||| Sbjct: 669 actggcaaacaaaacaaaac 650
>gb|AC130539.3| Mus musculus BAC clone RP23-455J15 from chromosome 9, complete sequence Length = 179156 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 accccctaccaaggaacagc 118 |||||||||||||||||||| Sbjct: 176660 accccctaccaaggaacagc 176641
>gb|AC122232.3| Mus musculus BAC clone RP23-136G1 from chromosome 7, complete sequence Length = 182272 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 57411 aaacaaaacaaaacatctta 57430
>gb|AC125154.3| Mus musculus BAC clone RP24-380C2 from chromosome 3, complete sequence Length = 186277 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 142549 ctggcaaacaaaacaaaaca 142568
>gb|AC122537.4| Mus musculus BAC clone RP24-548A15 from chromosome 7, complete sequence Length = 195987 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 150035 aaacaaaacaaaacatctta 150054
>gb|AC125405.4| Mus musculus BAC clone RP23-29M17 from 14, complete sequence Length = 190653 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 aaacaaaacaaaacatcttatttg 150 ||||||||||||||||||| |||| Sbjct: 44665 aaacaaaacaaaacatcttgtttg 44642
>gb|AC146786.1| Pan troglodytes BAC clone RP43-34C4 from UL, complete sequence Length = 167484 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 29791 aaacaaaacaaaacatctta 29810
>gb|AC004869.1| Homo sapiens PAC clone RP4-732C22 from 7, complete sequence Length = 159044 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 23362 aaacaaaacaaaacatctta 23381
>emb|Z82196.2|HS288L1 Human DNA sequence from clone RP1-288L1 on chromosome 22, complete sequence Length = 118593 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 acactggcaaacaaaacaaa 138 |||||||||||||||||||| Sbjct: 58985 acactggcaaacaaaacaaa 59004
>emb|AL590787.24| Human DNA sequence from clone RP11-271M24 on chromosome 13 Contains the MTMR6 gene for myotubularin related protein 6, the 5' end of a novel gene (KIAA0410) and 2 CpG islands, complete sequence Length = 122589 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 caaacaaaacaaaacatcttattt 149 |||||||||||||||| ||||||| Sbjct: 106452 caaacaaaacaaaacaccttattt 106429
>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence Length = 247394 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 197207 ctggcaaacaaaacaaaaca 197188
>gb|AC164068.2| Mus musculus chromosome 1, clone RP23-5H15, complete sequence Length = 178006 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gaacagcacactggcaaaca 131 |||||||||||||||||||| Sbjct: 19903 gaacagcacactggcaaaca 19884
>gb|AC093004.2| Homo sapiens 3 BAC RP11-129J11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159134 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 49541 aaacaaaacaaaacatctta 49560
>gb|AC091910.3| Homo sapiens chromosome 5 clone RP11-210I16, complete sequence Length = 169490 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 actggcaaacaaaacaaaac 140 |||||||||||||||||||| Sbjct: 143197 actggcaaacaaaacaaaac 143216
>gb|AC108937.4| Homo sapiens BAC clone RP11-679I19 from 4, complete sequence Length = 105033 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 62999 aaacaaaacaaaacatctta 62980
>gb|AC026730.6| Homo sapiens chromosome 5 clone CTD-2295C16, complete sequence Length = 134054 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 actggcaaacaaaacaaaac 140 |||||||||||||||||||| Sbjct: 5143 actggcaaacaaaacaaaac 5162
>gb|AE003738.3| Drosophila melanogaster chromosome 3R, section 76 of 118 of the complete sequence Length = 287397 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 200513 ctggcaaacaaaacaaaaca 200494
>gb|AC148702.1| Macaca mulatta Major Histocompatibility Complex BAC MMU326H24, complete sequence Length = 202513 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tagaagaggcattccctttt 21 |||||||||||||||||||| Sbjct: 78842 tagaagaggcattccctttt 78861
>gb|AC160090.4| Mus musculus 6 BAC RP23-322E20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206093 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 152552 aaacaaaacaaaacatctta 152571
>gb|AC126425.2| Lemur catta, clone -162D1, complete sequence Length = 154718 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 27462 ctggcaaacaaaacaaaaca 27481
>gb|AC131599.2| Lemur catta, clone -206F2, complete sequence Length = 155606 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 90275 ctggcaaacaaaacaaaaca 90256
>gb|AC140172.3| Homo sapiens chromosome 5 clone RP11-811J10, complete sequence Length = 178207 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 actggcaaacaaaacaaaac 140 |||||||||||||||||||| Sbjct: 42278 actggcaaacaaaacaaaac 42297
>gb|AC009915.5|AC009915 Drosophila melanogaster, chromosome 3R, region 94A-94A, BAC clone BACR09L14, complete sequence Length = 167368 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 110333 ctggcaaacaaaacaaaaca 110314
>gb|AC009482.4| Homo sapiens BAC clone RP11-303F17 from 2, complete sequence Length = 109582 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 70685 ctggcaaacaaaacaaaaca 70704
>gb|AC084531.1|CBRG22D22 Caenorhabditis briggsae cosmid G22D22, complete sequence Length = 38174 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 caaaacaaaacatcttatttgctt 153 |||||||| ||||||||||||||| Sbjct: 28076 caaaacaacacatcttatttgctt 28099
>gb|AC010873.12| Homo sapiens BAC clone RP11-112N16 from 2, complete sequence Length = 180602 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 137840 ctggcaaacaaaacaaaaca 137821
>gb|AC090945.1| Homo sapiens chromosome 3 clone RP11-255O19 map 3p, complete sequence Length = 160285 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 48300 ctggcaaacaaaacaaaaca 48319
>gb|AC092418.3| Homo sapiens chromosome 3 clone RP11-229A12, complete sequence Length = 164500 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 28679 aaacaaaacaaaacatctta 28698
>gb|AC127302.3| Mus musculus BAC clone RP23-269P7 from chromosome 9, complete sequence Length = 200073 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 21519 ctggcaaacaaaacaaaaca 21538
>ref|XM_318719.2| Anopheles gambiae str. PEST ENSANGP00000022680 (ENSANGG00000020222), partial mRNA Length = 657 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 tggtgaaggcgatgatgttgtcgg 407 ||||| |||||||||||||||||| Sbjct: 198 tggtgtaggcgatgatgttgtcgg 175
>emb|AL773596.12| Zebrafish DNA sequence from clone CH211-208G24 in linkage group 17, complete sequence Length = 206778 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 46829 aaacaaaacaaaacatctta 46848
>gb|AC113061.9| Mus musculus chromosome 14, clone RP23-255H22, complete sequence Length = 190623 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 104500 aaacaaaacaaaacatctta 104519
>gb|AC005920.1|AC005920 Homo sapiens chromosome 17, clone hRPK.700_H_6, complete sequence Length = 175793 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatcttatttg 150 |||||||||||||||| ||||||| Sbjct: 105552 aaacaaaacaaaacatgttatttg 105575
>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence Length = 230313 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ctggcaaacaaaacaaaaca 141 |||||||||||||||||||| Sbjct: 40599 ctggcaaacaaaacaaaaca 40618
>gb|AC138313.4| Mus musculus BAC clone RP23-243P9 from 9, complete sequence Length = 195883 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 accccctaccaaggaacagc 118 |||||||||||||||||||| Sbjct: 122511 accccctaccaaggaacagc 122530
>emb|AM039899.1| Hordeum vulgare partial mRNA for chromomethylase 1 (cmt1 gene) Length = 2441 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ttgtgcaagaagggtacaag 214 |||||||||||||||||||| Sbjct: 944 ttgtgcaagaagggtacaag 963
>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence Length = 173574 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatcttatttg 150 ||||||||||||||||||| |||| Sbjct: 110530 aaacaaaacaaaacatcttctttg 110553
>emb|AL627257.9| Mouse DNA sequence from clone RP23-3L4 on chromosome 4, complete sequence Length = 241053 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 110 aggaacagcacactggcaaacaaaacaaaaca 141 ||||||||| |||| |||||||||||||||| Sbjct: 202957 aggaacagctcactcacaaacaaaacaaaaca 202988
>emb|AL844843.4| Mouse DNA sequence from clone RP23-376P3 on chromosome X, complete sequence Length = 193470 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 aaacaaaacaaaacatctta 146 |||||||||||||||||||| Sbjct: 14203 aaacaaaacaaaacatctta 14222
>emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chromosome 4, complete sequence Length = 237318 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 110 aggaacagcacactggcaaacaaaacaaaaca 141 ||||||||| |||| |||||||||||||||| Sbjct: 61920 aggaacagctcactcacaaacaaaacaaaaca 61951 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,003,993 Number of Sequences: 3902068 Number of extensions: 5003993 Number of successful extensions: 464815 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 464016 Number of HSP's gapped (non-prelim): 799 length of query: 411 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 389 effective length of database: 17,147,199,772 effective search space: 6670260711308 effective search space used: 6670260711308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)