ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26d08 |
|---|---|
| Clone Library Name | barley_pub |
>RIR1_ARATH (Q9SJ20) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase R1 subunit) (AtRNR1) Length = 816 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/22 (81%), Positives = 20/22 (90%) Frame = -2 Query: 377 EAKMAQVVCSLNNPEECLACGS 312 E K+AQ+VCSL NPEECLACGS Sbjct: 795 ETKLAQMVCSLTNPEECLACGS 816
>RIR1_DROME (P48591) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 812 Score = 34.3 bits (77), Expect = 0.075 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 377 EAKMAQVVCSLNNPEECLACGS 312 E KMA +VCSL N + C++CGS Sbjct: 791 ERKMADMVCSLENKDACMSCGS 812
>RIR1_MOUSE (P07742) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 792 Score = 32.7 bits (73), Expect = 0.22 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -2 Query: 377 EAKMAQVVCSLNNPEECLACGS 312 E A +VCSL N EECL CGS Sbjct: 771 ERNTAAMVCSLENREECLMCGS 792
>RIR1_HUMAN (P23921) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 792 Score = 31.6 bits (70), Expect = 0.49 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 377 EAKMAQVVCSLNNPEECLACGS 312 E A +VCSL N +ECL CGS Sbjct: 771 ERNTAAMVCSLENRDECLMCGS 792
>RIR1_BRARE (P79732) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) (Ribonucleotide reductase protein R1 class I) Length = 794 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -2 Query: 377 EAKMAQVVCSLNNPEECLACGS 312 E A +VCSL N ECL CGS Sbjct: 773 ERNKAAMVCSLENRHECLMCGS 794
>SODM_CANAL (O13401) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 234 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Frame = +2 Query: 143 ATQPSRAAQQRNSSVLKHNRTYINDSFLALFNAN-DQTVGLCNAALVKRKIDATDPSNFR 319 AT+P + Q KH++TY+N+ NA+ +Q V + VK+ + NF Sbjct: 47 ATEPYISGQINEIHYTKHHQTYVNN-----LNASIEQAVEAKSKGEVKKLVALEKAINFN 101 Query: 320 MPGTLPGCSRSRQLAP 367 G L C + LAP Sbjct: 102 GGGYLNHCLWWKNLAP 117
>NU160_HUMAN (Q12769) Nuclear pore complex protein Nup160 (Nucleoporin Nup160)| (160 kDa nucleoporin) Length = 1316 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +2 Query: 287 KIDATDPSNFRMPGTLPGCSRSRQLAPFWL 376 K+D TDP N+++ +PG S + + WL Sbjct: 158 KVDFTDPCNYQLIPAVPGISPNSTASTAWL 187
>PLS_STAAN (P61598) Putative surface protein SA2285 precursor| Length = 1370 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +2 Query: 188 LKHNRTYINDSFLALFNANDQTVGLCNAALVKRKIDATDPSNFRM 322 ++ N T + S + FN +++ GL A +K KID + NF++ Sbjct: 182 IQKNPTDLGVSEVTRFNVGNESNGLIGALQLKNKIDFSKDFNFKV 226
>PLS_STAAM (Q931E9) Putative surface protein SAV2496/SAV2497 precursor| Length = 1114 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +2 Query: 188 LKHNRTYINDSFLALFNANDQTVGLCNAALVKRKIDATDPSNFRM 322 ++ N T + S + FN +++ GL A +K KID + NF++ Sbjct: 182 IQKNPTDLGVSEVTRFNVGNESNGLIGALQLKNKIDFSKDFNFKV 226
>YC8B_METJA (P81319) Hypothetical protein MJ1282.2| Length = 179 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/68 (26%), Positives = 29/68 (42%) Frame = +3 Query: 33 ISITATTRQINNTNNDTYIYSCSNPCF*IVQITSQHWQLSHQGLPSKGTHQFLNTTAPT* 212 +S T+ NN+ N TYI N F + ++ + G F +TT+P Sbjct: 14 VSFINTSGYYNNSENVTYINMSMNGSFSGILYVKSSYKNYTITINESGNFVFNDTTSPIE 73 Query: 213 TTLFSHYS 236 L ++YS Sbjct: 74 VELLNNYS 81
>ARGJ1_ANASP (Q8YVA8) Arginine biosynthesis bifunctional protein argJ 1| [Includes: Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate Length = 413 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +2 Query: 155 SRAAQQRNSSVLKHNRTYINDSFLALFNANDQTVGLCNAALVKRKIDA 298 +RAA + +S+ T NDS +AL N +T + K++A Sbjct: 212 TRAADRSFNSITVDGDTSTNDSLIALANGQSRTPAITEVGAESEKLEA 259
>HBBC_TRENE (P45721) Hemoglobin beta-C subunit (Hemoglobin beta-C chain)| (Beta-C-globin) Length = 146 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = +2 Query: 161 AAQQRNSSVLKHNRTYINDSFLALFNANDQTVGLCNAALVKRKIDATDPSNFRM 322 AA +N+ V KH T +N A+ N +D T +++ + DP NF++ Sbjct: 52 AAIAQNAMVSKHGTTILNGLDRAVKNMDDITNTYAELSVLHSEKLHVDPDNFKL 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,019,090 Number of Sequences: 219361 Number of extensions: 985069 Number of successful extensions: 2151 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2083 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2149 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
