>NCCH_ALCXX (Q44583) RNA polymerase sigma factor nccH|
          Length = 186

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 247 IIQRSTIGSWDTYQALNRAGEMKLPWMFIIKLSRLKDLMELRGIGH 384
           I+Q + I +W      + + ++  PW+F I L++++DL   R + H
Sbjct: 50  IVQDTFIAAWHALDDFD-SDKLFRPWLFRIGLNKMRDLRRFRQVRH 94

>RUMA_DECAR (Q47HS4) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 432

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 342 LKAEGPDGATRHWPSGGPTGTYEM 413
           L+ +GPD A R +PSGGP  +Y +
Sbjct: 224 LQPKGPDTAFRFYPSGGPRLSYTL 247

>ISP4_SCHPO (P40900) Sexual differentiation process protein isp4|
          Length = 785

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 22/92 (23%), Positives = 45/92 (48%)
 Frame = +3

Query: 45  YKS*RILTISTSKAQ*FDLGYSYIDSKTYKLIIQMNMDVKLNKDSVSTGVDVITSMQKAL 224
           Y++   + +ST+ A  F L ++ I S  + +I+    ++  ++       D+   + KA 
Sbjct: 400 YQNYSPIFMSTTYALAFGLSFASITSVIFHVILYHGKEI-YDRLRDPPAPDIHEKLMKAY 458

Query: 225 NGVFWYIYYSTVHNRIMGYLPGSK*SWRNETP 320
           + V +Y +Y +V     G + G+   W+ ETP
Sbjct: 459 DEVPFY-WYLSVFLAFFGMMMGTIYGWKTETP 489

>YKE7_YEAST (P36090) Hypothetical 58.9 kDa protein in ELM1-PRI2 intergenic|
           region
          Length = 516

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +3

Query: 75  TSKAQ*FDLGYSYIDSKTYKLIIQMNMDVKLNKDSVSTGV--DVITSMQKALNGVFWYIY 248
           T+K   +D G +Y    ++ +I   N   +      S GV  DV  +   +    +  IY
Sbjct: 92  TAKTTTYDYGIAYFKQNSFDIIENDNRIDRSKVQMFSLGVIIDVQNASSDSKKHFYKEIY 151

Query: 249 YSTVHNRIMGYLPGSK*SWRNETPLD 326
           ++   NR   YL      W  +  LD
Sbjct: 152 HAYAANRYSSYLESLLGQWIRQRDLD 177

>FMT_SYNPX (Q7U6Z1) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 338

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +3

Query: 258 VHNRIMGYLPGSK*SW--------RNETPLDVHHQTLKAEGPDGATRHWPSGGPTG 401
           +H ++MG  PG++ SW        + E  +D     L  E  +     WP+GG  G
Sbjct: 230 IHRQVMGLYPGAQTSWNGKRLKLTQTEPLIDRLKDQLSPEAQE-LVGQWPTGGHAG 284

>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC|
           2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1)
          Length = 1166

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 261 HNRIMGYLPGSK*SWRNETPLDVHHQTLKAEGPDG 365
           HN + GYLPGS  S    + LDV +  L    P G
Sbjct: 696 HNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFG 730


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,712,985
Number of Sequences: 219361
Number of extensions: 1238288
Number of successful extensions: 2477
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2477
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)