ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 68 1e-08
2ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 2.2
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
4dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
5ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA syntheta... 38 8.8
6gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cd... 38 8.8
7gb|AC091192.6| Homo sapiens chromosome 8, clone RP11-731N10, com... 38 8.8
8gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 38 8.8
9gb|AC110025.4| Homo sapiens chromosome 8, clone CTD-2294G15, com... 38 8.8
10gb|AC006419.4| Arabidopsis thaliana chromosome 2 clone F3K12 map... 38 8.8
11gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence 38 8.8
12gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome... 38 8.8
13tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform ... 38 8.8
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.8
15gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA syntheta... 38 8.8
16gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporte... 38 8.8
17dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.8
18dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.8
19gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial p... 38 8.8
20gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial p... 38 8.8
21gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporte... 38 8.8
22gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporte... 38 8.8
23gb|AC171211.1| Mus musculus BAC clone RP23-34I14 from chromosome... 38 8.8

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 115  ttcattattgggcaaaacaagggannnnnnnngcacacaacaatgcattgaccggtagcc 174
            ||||||||||||||||||||||||        |||||| || ||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                  
Query: 175  agctga 180
            ||||||
Sbjct: 2836 agctga 2831



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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 92   ggagggaacatcacaccatc 111
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 24       caacgcccaaactgaaaatcacaacaatgcct 55
                |||| ||||||||||||| | |||||||||||
Sbjct: 18830365 caactcccaaactgaaaaactcaacaatgcct 18830396



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>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1123_G08
          Length = 146944

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 24     caacgcccaaactgaaaatcacaacaatgcct 55
              |||| ||||||||||||| | |||||||||||
Sbjct: 133814 caactcccaaactgaaaaactcaacaatgcct 133845



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>ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA synthetase
            (GLP_661_10786_9158) partial mRNA
          Length = 1629

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 150  cacaacaatgcattgaccg 168
            |||||||||||||||||||
Sbjct: 1215 cacaacaatgcattgaccg 1197



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>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced
          Length = 1285452

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     atcacaacaatgcctgagg 59
              |||||||||||||||||||
Sbjct: 705265 atcacaacaatgcctgagg 705283



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>gb|AC091192.6| Homo sapiens chromosome 8, clone RP11-731N10, complete sequence
          Length = 175372

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    ccaaactgaaaatcacaac 48
             |||||||||||||||||||
Sbjct: 11076 ccaaactgaaaatcacaac 11094



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 108  catcgacttcattattgggcaaa 130
            ||||||||| |||||||||||||
Sbjct: 1099 catcgactttattattgggcaaa 1077



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>gb|AC110025.4| Homo sapiens chromosome 8, clone CTD-2294G15, complete sequence
          Length = 108074

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    ccaaactgaaaatcacaac 48
             |||||||||||||||||||
Sbjct: 18491 ccaaactgaaaatcacaac 18473



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>gb|AC006419.4| Arabidopsis thaliana chromosome 2 clone F3K12 map mi421, complete
             sequence
          Length = 113960

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    agcttgcaacgcccaaact 36
             |||||||||||||||||||
Sbjct: 14472 agcttgcaacgcccaaact 14454



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>gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence
          Length = 178621

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     atcacaacaatgcctgagg 59
              |||||||||||||||||||
Sbjct: 169438 atcacaacaatgcctgagg 169456



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>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence
          Length = 180261

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      gacagaggaaacaaaggag 19
              |||||||||||||||||||
Sbjct: 150274 gacagaggaaacaaaggag 150292



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>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene,
              alternatively spliced, complete cds
          Length = 1421559

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     atcacaacaatgcctgagg 59
              |||||||||||||||||||
Sbjct: 705265 atcacaacaatgcctgagg 705283



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 100      catcacaccatcgacttcattat 122
                |||||||||||||| ||||||||
Sbjct: 22022485 catcacaccatcgaattcattat 22022463



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 32       aaactgaaaatcacaacaa 50
                |||||||||||||||||||
Sbjct: 21532593 aaactgaaaatcacaacaa 21532611



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>gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA synthetase (proS) gene, complete cds
          Length = 1629

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 150  cacaacaatgcattgaccg 168
            |||||||||||||||||||
Sbjct: 1215 cacaacaatgcattgaccg 1197



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>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds
          Length = 3402

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  ggaacatcacaccatcgac 114
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0489D11
          Length = 150757

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    aaactgaaaatcacaacaa 50
             |||||||||||||||||||
Sbjct: 94203 aaactgaaaatcacaacaa 94221



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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 100   catcacaccatcgacttcattat 122
             |||||||||||||| ||||||||
Sbjct: 64549 catcacaccatcgaattcattat 64527



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>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B
           mRNA, complete cds
          Length = 681

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 107 ccatcgacttcattattgg 125
           |||||||||||||||||||
Sbjct: 271 ccatcgacttcattattgg 253



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>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A
           mRNA, complete cds
          Length = 692

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 107 ccatcgacttcattattgg 125
           |||||||||||||||||||
Sbjct: 328 ccatcgacttcattattgg 310



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>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete
           cds
          Length = 3085

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  ggaacatcacaccatcgac 114
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete
           cds
          Length = 2703

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  ggaacatcacaccatcgac 114
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>gb|AC171211.1| Mus musculus BAC clone RP23-34I14 from chromosome 16, complete sequence
          Length = 230462

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      gacagaggaaacaaaggag 19
              |||||||||||||||||||
Sbjct: 199271 gacagaggaaacaaaggag 199253


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,199,063
Number of Sequences: 3902068
Number of extensions: 1199063
Number of successful extensions: 118327
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118198
Number of HSP's gapped (non-prelim): 129
length of query: 180
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 158
effective length of database: 17,147,199,772
effective search space: 2709257563976
effective search space used: 2709257563976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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