Clone Name | rbastl26d02 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 67.9 bits (34), Expect = 1e-08 Identities = 56/66 (84%) Strand = Plus / Minus Query: 115 ttcattattgggcaaaacaagggannnnnnnngcacacaacaatgcattgaccggtagcc 174 |||||||||||||||||||||||| |||||| || |||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 175 agctga 180 |||||| Sbjct: 2836 agctga 2831
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin (LOC579890), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ggagggaacatcacaccatc 111 |||||||||||||||||||| Sbjct: 1457 ggagggaacatcacaccatc 1438
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 24 caacgcccaaactgaaaatcacaacaatgcct 55 |||| ||||||||||||| | ||||||||||| Sbjct: 18830365 caactcccaaactgaaaaactcaacaatgcct 18830396
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 24 caacgcccaaactgaaaatcacaacaatgcct 55 |||| ||||||||||||| | ||||||||||| Sbjct: 133814 caactcccaaactgaaaaactcaacaatgcct 133845
>ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA synthetase (GLP_661_10786_9158) partial mRNA Length = 1629 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 150 cacaacaatgcattgaccg 168 ||||||||||||||||||| Sbjct: 1215 cacaacaatgcattgaccg 1197
>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced Length = 1285452 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 atcacaacaatgcctgagg 59 ||||||||||||||||||| Sbjct: 705265 atcacaacaatgcctgagg 705283
>gb|AC091192.6| Homo sapiens chromosome 8, clone RP11-731N10, complete sequence Length = 175372 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 ccaaactgaaaatcacaac 48 ||||||||||||||||||| Sbjct: 11076 ccaaactgaaaatcacaac 11094
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 108 catcgacttcattattgggcaaa 130 ||||||||| ||||||||||||| Sbjct: 1099 catcgactttattattgggcaaa 1077
>gb|AC110025.4| Homo sapiens chromosome 8, clone CTD-2294G15, complete sequence Length = 108074 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 ccaaactgaaaatcacaac 48 ||||||||||||||||||| Sbjct: 18491 ccaaactgaaaatcacaac 18473
>gb|AC006419.4| Arabidopsis thaliana chromosome 2 clone F3K12 map mi421, complete sequence Length = 113960 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 agcttgcaacgcccaaact 36 ||||||||||||||||||| Sbjct: 14472 agcttgcaacgcccaaact 14454
>gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence Length = 178621 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 atcacaacaatgcctgagg 59 ||||||||||||||||||| Sbjct: 169438 atcacaacaatgcctgagg 169456
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence Length = 180261 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 gacagaggaaacaaaggag 19 ||||||||||||||||||| Sbjct: 150274 gacagaggaaacaaaggag 150292
>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 atcacaacaatgcctgagg 59 ||||||||||||||||||| Sbjct: 705265 atcacaacaatgcctgagg 705283
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 100 catcacaccatcgacttcattat 122 |||||||||||||| |||||||| Sbjct: 22022485 catcacaccatcgaattcattat 22022463 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aaactgaaaatcacaacaa 50 ||||||||||||||||||| Sbjct: 21532593 aaactgaaaatcacaacaa 21532611
>gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA synthetase (proS) gene, complete cds Length = 1629 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 150 cacaacaatgcattgaccg 168 ||||||||||||||||||| Sbjct: 1215 cacaacaatgcattgaccg 1197
>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds Length = 3402 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 ggaacatcacaccatcgac 114 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691
>dbj|AP005742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0489D11 Length = 150757 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 aaactgaaaatcacaacaa 50 ||||||||||||||||||| Sbjct: 94203 aaactgaaaatcacaacaa 94221
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 100 catcacaccatcgacttcattat 122 |||||||||||||| |||||||| Sbjct: 64549 catcacaccatcgaattcattat 64527
>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B mRNA, complete cds Length = 681 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 ccatcgacttcattattgg 125 ||||||||||||||||||| Sbjct: 271 ccatcgacttcattattgg 253
>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A mRNA, complete cds Length = 692 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 ccatcgacttcattattgg 125 ||||||||||||||||||| Sbjct: 328 ccatcgacttcattattgg 310
>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete cds Length = 3085 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 ggaacatcacaccatcgac 114 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691
>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete cds Length = 2703 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 ggaacatcacaccatcgac 114 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691
>gb|AC171211.1| Mus musculus BAC clone RP23-34I14 from chromosome 16, complete sequence Length = 230462 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 gacagaggaaacaaaggag 19 ||||||||||||||||||| Sbjct: 199271 gacagaggaaacaaaggag 199253 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,199,063 Number of Sequences: 3902068 Number of extensions: 1199063 Number of successful extensions: 118327 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118198 Number of HSP's gapped (non-prelim): 129 length of query: 180 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 158 effective length of database: 17,147,199,772 effective search space: 2709257563976 effective search space used: 2709257563976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)