Clone Name | rbastl26c12 |
---|---|
Clone Library Name | barley_pub |
>PACC_CRYNE (Q5KCH0) pH-response transcription factor pacC/RIM101| Length = 917 Score = 32.7 bits (73), Expect = 0.36 Identities = 20/57 (35%), Positives = 33/57 (57%) Frame = +1 Query: 127 EREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKRNAAQVGGLPT 297 +R G+S + RASS + + +S +++ S L S++ S TTTP R + G+PT Sbjct: 720 QRGGHSSGQYRRASSLSSNSTSTSGSSSFNSSLAPSNVASGTTTP-RGSTPPRGVPT 775
>CRH2_YEAST (P32623) Probable glycosidase CRH2 precursor (EC 3.2.-.-) (Congo| red hypersensitive protein 2) (Unknown transcript 2 protein) Length = 467 Score = 31.2 bits (69), Expect = 1.0 Identities = 20/64 (31%), Positives = 35/64 (54%) Frame = +1 Query: 97 SNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKRNAA 276 ++SD SSST++ S + +SS++ + SS T ++VSS + SS T+ + + Sbjct: 370 TSSDHSSSTKKSSKTSSTASSSSSSSSSSSSSSSTATKNGDKVVSS-VSSSVTSQTQTTS 428 Query: 277 QVGG 288 V G Sbjct: 429 SVSG 432 Score = 28.1 bits (61), Expect = 8.8 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +1 Query: 73 LNSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISST 252 L+ +G ++S SS+ SK +SST K + SS ++ +S SS SST Sbjct: 345 LDPHKGATTSSTQKSSSSTATSSSKTSSDHSSSTKKSSKTSSTASSSSSSSSSSSSSSST 404 Query: 253 TT 258 T Sbjct: 405 AT 406
>DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently-linked cell| wall protein 13) Length = 298 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/66 (25%), Positives = 36/66 (54%) Frame = +1 Query: 97 SNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKRNAA 276 S+++ SS+ + + + A+ST + +SSV +++AS + SS ++TT P + + Sbjct: 149 SSAETSSNAASTQATVSSESSSAASTIASSAESSVASSVASSVASSASFANTTAPVSSTS 208 Query: 277 QVGGLP 294 + P Sbjct: 209 SISVTP 214
>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner| cell wall protein) Length = 238 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/53 (35%), Positives = 28/53 (52%) Frame = +1 Query: 94 ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISST 252 AS+S SSST+ + ++ASST + SS T +S SS +SS+ Sbjct: 124 ASSSSASSSTKASSSSAAPSSSKASSTESSSSSSSSTKAPSSEESSSTYVSSS 176
>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major| vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I) (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II) (LVII); YGP40] Length = 1850 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Frame = +1 Query: 94 ASNSDPSSSTR--EREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKR 267 A N D SSS+R + SK+ +++S+++K + SS +++ +SR SS SS+ + Sbjct: 1161 ARNKDASSSSRSSKSSNSSKRSSSKSSNSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSS 1220 Query: 268 NAA 276 +++ Sbjct: 1221 SSS 1223 Score = 29.3 bits (64), Expect = 3.9 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +1 Query: 76 NSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTT 255 +S+ +S+S SSS+ + S K + +SS ++ + KSS +++ +S SS SS + Sbjct: 1200 SSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSSSSSSKSSSSRS 1259 Query: 256 T 258 + Sbjct: 1260 S 1260
>PGL1_CAEEL (Q9TZQ3) P granule abnormality protein 1| Length = 730 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/58 (27%), Positives = 29/58 (50%) Frame = +1 Query: 76 NSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISS 249 ++ G SN PS+S ++ Y+K++ T +T V K+ V ++ S L+ S Sbjct: 452 DTPSGRKSNVQPSTSQQQDSAYTKEEMTTVHNTYSVNTKAQVLNGLSDTNSSGLLVDS 509
>YMH1_CAEEL (P34468) Hypothetical protein F58A4.1| Length = 254 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +1 Query: 97 SNSDPSSSTREREGYSKKK*T-RASSTNKVTDKSSVTTTMASRLVSSHLISSTT 255 ++S PS+ST S T R++ST T +SS TTT S SS ++T+ Sbjct: 93 THSSPSTSTSTSTSTSTSTSTSRSTSTVTPTTRSSTTTTATSTPTSSSKATTTS 146
>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (DNup214) Length = 1711 Score = 28.5 bits (62), Expect = 6.7 Identities = 21/65 (32%), Positives = 31/65 (47%) Frame = +1 Query: 97 SNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKRNAA 276 SNS+P ++ K T +++ VTD SVTTT A ++S+T P Sbjct: 1146 SNSEPITTVTSNTTTITSKPTNVIASSSVTDAPSVTTTNA--------VTSSTDP----- 1192 Query: 277 QVGGL 291 +GGL Sbjct: 1193 -IGGL 1196
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/76 (25%), Positives = 33/76 (43%) Frame = +1 Query: 34 THXXXXXXXALIELNSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTM 213 T L +NS +++S P +S S + +T+ V SSV++T Sbjct: 479 TTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTP 538 Query: 214 ASRLVSSHLISSTTTP 261 S S+ S+++TP Sbjct: 539 LSSANSTTATSASSTP 554 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/76 (25%), Positives = 33/76 (43%) Frame = +1 Query: 34 THXXXXXXXALIELNSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTM 213 T L +NS +++S P +S S + +T+ V SSV++T Sbjct: 365 TTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTP 424 Query: 214 ASRLVSSHLISSTTTP 261 S S+ S+++TP Sbjct: 425 LSSANSTTATSASSTP 440
>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2| precursor Length = 503 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +1 Query: 76 NSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTT 255 +S+ +S + T+ S + +SST T SS TTT +S SS S+T+ Sbjct: 138 SSSTSVSSKTSTKLDTKTSTSSSATHSSSSSSTTSTTTSSSETTTSSSSSSSSSSTSTTS 197 Query: 256 T 258 T Sbjct: 198 T 198
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/67 (25%), Positives = 35/67 (52%) Frame = +1 Query: 76 NSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTT 255 +S+ +S+S SSS+ S + +SS++ + SS + + S SSH SS++ Sbjct: 165 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSS 224 Query: 256 TPKRNAA 276 + +++ Sbjct: 225 SSSSSSS 231
>EMSY_MOUSE (Q8BMB0) Protein EMSY| Length = 1264 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = +1 Query: 94 ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLV--SSHLISSTTTP 261 ASNS E +GY+ + S+ D V +ASR S H I+ T+P Sbjct: 665 ASNSSAQEGKEEPQGYTDSSSSSTESSQSSQDSQPVVHVIASRRQDWSEHEIAMETSP 722 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,202,420 Number of Sequences: 219361 Number of extensions: 764274 Number of successful extensions: 2471 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2327 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2454 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)