ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PACC_CRYNE (Q5KCH0) pH-response transcription factor pacC/RIM101 33 0.36
2CRH2_YEAST (P32623) Probable glycosidase CRH2 precursor (EC 3.2.... 31 1.0
3DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently... 31 1.4
4CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 prec... 30 2.3
5VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (... 30 2.3
6PGL1_CAEEL (Q9TZQ3) P granule abnormality protein 1 29 5.2
7YMH1_CAEEL (P34468) Hypothetical protein F58A4.1 28 6.7
8NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleo... 28 6.7
9YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P... 28 6.7
10WSC2_YEAST (P53832) Cell wall integrity and stress response comp... 28 8.8
11YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor 28 8.8
12EMSY_MOUSE (Q8BMB0) Protein EMSY 28 8.8

>PACC_CRYNE (Q5KCH0) pH-response transcription factor pacC/RIM101|
          Length = 917

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = +1

Query: 127 EREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKRNAAQVGGLPT 297
           +R G+S  +  RASS +  +  +S +++  S L  S++ S TTTP R +    G+PT
Sbjct: 720 QRGGHSSGQYRRASSLSSNSTSTSGSSSFNSSLAPSNVASGTTTP-RGSTPPRGVPT 775



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>CRH2_YEAST (P32623) Probable glycosidase CRH2 precursor (EC 3.2.-.-) (Congo|
           red hypersensitive protein 2) (Unknown transcript 2
           protein)
          Length = 467

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 20/64 (31%), Positives = 35/64 (54%)
 Frame = +1

Query: 97  SNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKRNAA 276
           ++SD SSST++    S    + +SS++  +  SS  T    ++VSS + SS T+  +  +
Sbjct: 370 TSSDHSSSTKKSSKTSSTASSSSSSSSSSSSSSSTATKNGDKVVSS-VSSSVTSQTQTTS 428

Query: 277 QVGG 288
            V G
Sbjct: 429 SVSG 432



 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +1

Query: 73  LNSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISST 252
           L+  +G  ++S   SS+      SK     +SST K +  SS  ++ +S   SS   SST
Sbjct: 345 LDPHKGATTSSTQKSSSSTATSSSKTSSDHSSSTKKSSKTSSTASSSSSSSSSSSSSSST 404

Query: 253 TT 258
            T
Sbjct: 405 AT 406



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>DAN1_YEAST (P47178) Cell wall protein DAN1 precursor (Covalently-linked cell|
           wall protein 13)
          Length = 298

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/66 (25%), Positives = 36/66 (54%)
 Frame = +1

Query: 97  SNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKRNAA 276
           S+++ SS+    +     + + A+ST   + +SSV +++AS + SS   ++TT P  + +
Sbjct: 149 SSAETSSNAASTQATVSSESSSAASTIASSAESSVASSVASSVASSASFANTTAPVSSTS 208

Query: 277 QVGGLP 294
            +   P
Sbjct: 209 SISVTP 214



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>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner|
           cell wall protein)
          Length = 238

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 94  ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISST 252
           AS+S  SSST+     +    ++ASST   +  SS T   +S   SS  +SS+
Sbjct: 124 ASSSSASSSTKASSSSAAPSSSKASSTESSSSSSSSTKAPSSEESSSTYVSSS 176



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>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP40]
          Length = 1850

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +1

Query: 94   ASNSDPSSSTR--EREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKR 267
            A N D SSS+R  +    SK+  +++S+++K +  SS +++ +SR  SS   SS+ +   
Sbjct: 1161 ARNKDASSSSRSSKSSNSSKRSSSKSSNSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSS 1220

Query: 268  NAA 276
            +++
Sbjct: 1221 SSS 1223



 Score = 29.3 bits (64), Expect = 3.9
 Identities = 18/61 (29%), Positives = 35/61 (57%)
 Frame = +1

Query: 76   NSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTT 255
            +S+   +S+S  SSS+  +   S  K + +SS ++ + KSS +++ +S   SS   SS +
Sbjct: 1200 SSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSSSSSSKSSSSRS 1259

Query: 256  T 258
            +
Sbjct: 1260 S 1260



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>PGL1_CAEEL (Q9TZQ3) P granule abnormality protein 1|
          Length = 730

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 76  NSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISS 249
           ++  G  SN  PS+S ++   Y+K++ T   +T  V  K+ V   ++    S  L+ S
Sbjct: 452 DTPSGRKSNVQPSTSQQQDSAYTKEEMTTVHNTYSVNTKAQVLNGLSDTNSSGLLVDS 509



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>YMH1_CAEEL (P34468) Hypothetical protein F58A4.1|
          Length = 254

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 97  SNSDPSSSTREREGYSKKK*T-RASSTNKVTDKSSVTTTMASRLVSSHLISSTT 255
           ++S PS+ST      S    T R++ST   T +SS TTT  S   SS   ++T+
Sbjct: 93  THSSPSTSTSTSTSTSTSTSTSRSTSTVTPTTRSSTTTTATSTPTSSSKATTTS 146



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>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (DNup214)
          Length = 1711

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +1

Query: 97   SNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTTTPKRNAA 276
            SNS+P ++          K T   +++ VTD  SVTTT A        ++S+T P     
Sbjct: 1146 SNSEPITTVTSNTTTITSKPTNVIASSSVTDAPSVTTTNA--------VTSSTDP----- 1192

Query: 277  QVGGL 291
             +GGL
Sbjct: 1193 -IGGL 1196



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>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = +1

Query: 34  THXXXXXXXALIELNSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTM 213
           T         L  +NS    +++S P +S       S      + +T+ V   SSV++T 
Sbjct: 479 TTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTP 538

Query: 214 ASRLVSSHLISSTTTP 261
            S   S+   S+++TP
Sbjct: 539 LSSANSTTATSASSTP 554



 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/76 (25%), Positives = 33/76 (43%)
 Frame = +1

Query: 34  THXXXXXXXALIELNSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTM 213
           T         L  +NS    +++S P +S       S      + +T+ V   SSV++T 
Sbjct: 365 TTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTP 424

Query: 214 ASRLVSSHLISSTTTP 261
            S   S+   S+++TP
Sbjct: 425 LSSANSTTATSASSTP 440



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>WSC2_YEAST (P53832) Cell wall integrity and stress response component 2|
           precursor
          Length = 503

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 76  NSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTT 255
           +S+   +S +     T+     S    + +SST   T  SS TTT +S   SS   S+T+
Sbjct: 138 SSSTSVSSKTSTKLDTKTSTSSSATHSSSSSSTTSTTTSSSETTTSSSSSSSSSSTSTTS 197

Query: 256 T 258
           T
Sbjct: 198 T 198



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>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor|
          Length = 374

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = +1

Query: 76  NSAQG*ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLVSSHLISSTT 255
           +S+   +S+S  SSS+      S    + +SS++  +  SS +  + S   SSH  SS++
Sbjct: 165 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSS 224

Query: 256 TPKRNAA 276
           +   +++
Sbjct: 225 SSSSSSS 231



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>EMSY_MOUSE (Q8BMB0) Protein EMSY|
          Length = 1264

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +1

Query: 94  ASNSDPSSSTREREGYSKKK*TRASSTNKVTDKSSVTTTMASRLV--SSHLISSTTTP 261
           ASNS       E +GY+    +   S+    D   V   +ASR    S H I+  T+P
Sbjct: 665 ASNSSAQEGKEEPQGYTDSSSSSTESSQSSQDSQPVVHVIASRRQDWSEHEIAMETSP 722


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,202,420
Number of Sequences: 219361
Number of extensions: 764274
Number of successful extensions: 2471
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2454
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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