ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HGT1_CANAL (O74713) High-affinity glucose transporter 29 3.3
2VD05_VARV (P33069) Protein D5 28 7.4
3TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine syntheta... 28 7.4

>HGT1_CANAL (O74713) High-affinity glucose transporter|
          Length = 545

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 233 GCGH--EVAKRRLKWGMTRSPGACLFL 307
           G GH   VA  R+ WG+   PG CLFL
Sbjct: 180 GLGHINGVASFRIAWGLQIVPGLCLFL 206



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>VD05_VARV (P33069) Protein D5|
          Length = 785

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 44  NLEENNNKIASCAKLDYYYYCSTLEQLYS*VQ*T*HLHPHQYLVEDDAV*SVSRISYDHS 223
           +L+ENN        +DY   C+  ++         H HPHQ  +E+DA+  + +    HS
Sbjct: 263 DLDENNFTTVPLV-IDYVTPCALCKKRS-------HKHPHQLSLENDAI-RIYKTGNPHS 313

Query: 224 C 226
           C
Sbjct: 314 C 314



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>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)|
           [Includes: ATP-dependent asparagine adenylase (AsnA)
           (Asparagine activase); ATP-dependent glutamine adenylase
           (GlnA) (Glutamine activase); ATP-dependent tyrosine
           adenylase (TyrA) (Ty
          Length = 6486

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
 Frame = -1

Query: 305 ETGMPLVTSSCPIL---TAFLPLHGHTPE----YKSDHMKCVKHFTQRHLRPNTDADGGV 147
           E  + L+ +   +L    A+LP+    P+    Y  D  +     TQ HL+PN    G V
Sbjct: 522 EHSLELIVAIMAVLRSGAAYLPIDPEYPQDRIQYLLDDSQTTLLLTQSHLQPNIRFAGSV 581

Query: 146 MFIALRS 126
           +++  RS
Sbjct: 582 LYLDDRS 588


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,390,546
Number of Sequences: 219361
Number of extensions: 870299
Number of successful extensions: 1767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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