ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105391.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
2dbj|AK101482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
4dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
5gb|AY109507.1| Zea mays CL553_1 mRNA sequence 56 1e-04
6gb|AC147101.2| Mus musculus BAC clone RP23-455H16 from chromosom... 44 0.37
7gb|AC132582.3| Mus musculus BAC clone RP24-319N10 from chromosom... 44 0.37
8gb|AC150912.3| Pan troglodytes BAC clone CH251-18B3 from chromos... 40 5.8
9gb|AC162380.4| Pan troglodytes BAC clone CH251-629G18 from chrom... 40 5.8
10gb|AC119166.16| Mus musculus chromosome 1, clone RP24-393L8, com... 40 5.8
11gb|AC148932.3| Pan troglodytes BAC clone CH251-571G8 from chromo... 40 5.8
12gb|AY423588.1| Reticulitermes santonensis clone RS43 microsatell... 40 5.8
13gb|AC007683.5| Homo sapiens BAC clone RP11-401L13 from 7, comple... 40 5.8
14gb|AC126217.3| Rattus norvegicus 1 BAC CH230-9L4 (Children's Hos... 40 5.8
15gb|AC142337.1| Pan troglodytes BAC clone RP43-39F23 from 7, comp... 40 5.8
16gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete s... 40 5.8
17emb|AL596225.11| Human DNA sequence from clone RP11-30D7 on chro... 40 5.8
18emb|AL358512.9| Human DNA sequence from clone RP11-102M16 on chr... 40 5.8
19emb|AL031782.1|HS708F5 Human DNA sequence from clone RP4-708F5 o... 40 5.8
20gb|AC078880.27| Homo sapiens 12 BAC RP11-116D17 (Roswell Park Ca... 40 5.8
21tpg|BK001791.1| TPA: TPA_inf: Bos taurus RTN2-C (RTN2) mRNA, com... 40 5.8
22gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, com... 40 5.8
23gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor ... 40 5.8
24gb|AC161278.2| Pan troglodytes BAC clone CH251-486B7 from chromo... 40 5.8
25gb|AC148835.3| Pan troglodytes BAC clone CH251-25M11 from chromo... 40 5.8
26emb|CR383658.1| Human chromosome 14 DNA sequence BAC R-754I20 of... 40 5.8
27emb|CR383657.1| Human chromosome 14 DNA sequence BAC R-491G9 of ... 40 5.8
28gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8... 40 5.8
29gb|AC016945.22| Homo sapiens 3 BAC RP11-31L6 (Roswell Park Cance... 40 5.8
30dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
31gb|AC006379.2|AC006379 Homo sapiens BAC clone RP11-456N16 from 7... 40 5.8
32ref|NM_182656.1| Bos taurus reticulon 2 (RTN2), mRNA 40 5.8
33dbj|AB078046.1| Flexibacter canadensis gene for 16S rRNA, strain... 40 5.8
34gb|AC005400.1|AC005400 Homo sapiens clone UWGC:g1564a310 from 7p... 40 5.8
35gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromoso... 40 5.8
36gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromoso... 40 5.8
37gb|M62793.1|FBCRRDA F.canadensis 16S ribosomal RNA 40 5.8
38dbj|AP000539.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 40 5.8
39emb|AL591892.4| Mouse DNA sequence from clone RP23-422F22 on chr... 40 5.8 
>dbj|AK105391.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-H06, full
           insert sequence
          Length = 960

 Score =  103 bits (52), Expect = 5e-19
 Identities = 118/140 (84%)
 Strand = Plus / Minus

                                                                       
Query: 246 agctgcagatcaattgggggatagccttcgatgcactttaccgtaatcttgccatttcca 305
           ||||| ||||||||||| ||  ||||||| ||| | |  ||||||||||||||||| |||
Sbjct: 651 agctggagatcaattggtgggaagccttcaatgaaatccaccgtaatcttgccattccca 592

                                                                       
Query: 306 gtctggaattcgttcttcaatctggaaatggaccttgacaacaaatacactcttaacgcc 365
           | ||||||||| ||||||||||||||||| ||||||||||  ||||| ||| |||| || 
Sbjct: 591 gcctggaattcattcttcaatctggaaatagaccttgacagtaaatatacttttaatgca 532

                               
Query: 366 tcaatatggtcactgttgcc 385
           |||| ||| |||| ||||||
Sbjct: 531 tcaaaatgctcacggttgcc 512
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>dbj|AK101482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041F01, full
            insert sequence
          Length = 4632

 Score =  103 bits (52), Expect = 5e-19
 Identities = 118/140 (84%)
 Strand = Plus / Minus

                                                                        
Query: 246  agctgcagatcaattgggggatagccttcgatgcactttaccgtaatcttgccatttcca 305
            ||||| ||||||||||| ||  ||||||| ||| | |  ||||||||||||||||| |||
Sbjct: 4323 agctggagatcaattggtgggaagccttcaatgaaatccaccgtaatcttgccattccca 4264

                                                                        
Query: 306  gtctggaattcgttcttcaatctggaaatggaccttgacaacaaatacactcttaacgcc 365
            | ||||||||| ||||||||||||||||| ||||||||||  ||||| ||| |||| || 
Sbjct: 4263 gcctggaattcattcttcaatctggaaatagaccttgacagtaaatatacttttaatgca 4204

                                
Query: 366  tcaatatggtcactgttgcc 385
            |||| ||| |||| ||||||
Sbjct: 4203 tcaaaatgctcacggttgcc 4184
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 81/94 (86%)
 Strand = Plus / Minus

                                                                            
Query: 293      cttgccatttccagtctggaattcgttcttcaatctggaaatggaccttgacaacaaata 352
                ||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||  |||||
Sbjct: 25961167 cttgccattcccagcctggaattcattcttcaatctggaaatagaccttgacagtaaata 25961108

                                                  
Query: 353      cactcttaacgcctcaatatggtcactgttgcct 386
                 ||| |||| || |||| ||| |||| |||||||
Sbjct: 25961107 tacttttaatgcatcaaaatgctcacggttgcct 25961074



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 88       ctaagtaaatgatacattgc 107
                ||||||||||||||||||||
Sbjct: 11095326 ctaagtaaatgatacattgc 11095345
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>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0017B12
          Length = 157424

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 81/94 (86%)
 Strand = Plus / Minus

                                                                          
Query: 293    cttgccatttccagtctggaattcgttcttcaatctggaaatggaccttgacaacaaata 352
              ||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||  |||||
Sbjct: 116265 cttgccattcccagcctggaattcattcttcaatctggaaatagaccttgacagtaaata 116206

                                                
Query: 353    cactcttaacgcctcaatatggtcactgttgcct 386
               ||| |||| || |||| ||| |||| |||||||
Sbjct: 116205 tacttttaatgcatcaaaatgctcacggttgcct 116172
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>gb|AY109507.1| Zea mays CL553_1 mRNA sequence
          Length = 3145

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 264  ggatagccttcgatgcactttaccgtaatcttgccatttccagtctggaattcgttcttc 323
            ||||| ||||||||||| |  |||||||||  |||||||||| | ||||| | |||||||
Sbjct: 2953 ggataaccttcgatgcagtcgaccgtaatcacgccatttccactttggaactggttcttc 2894

                    
Query: 324  aatctgga 331
            ||||||||
Sbjct: 2893 aatctgga 2886
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>gb|AC147101.2| Mus musculus BAC clone RP23-455H16 from chromosome 12, complete sequence
          Length = 168258

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 65     cccttccatccttgccagcaca 86
              ||||||||||||||||||||||
Sbjct: 103392 cccttccatccttgccagcaca 103413
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>gb|AC132582.3| Mus musculus BAC clone RP24-319N10 from chromosome 12, complete sequence
          Length = 159310

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 65     cccttccatccttgccagcaca 86
              ||||||||||||||||||||||
Sbjct: 134924 cccttccatccttgccagcaca 134945
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>gb|AC150912.3| Pan troglodytes BAC clone CH251-18B3 from chromosome 7, complete
             sequence
          Length = 170021

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     gggagcacactgtaatagac 28
             ||||||||||||||||||||
Sbjct: 37435 gggagcacactgtaatagac 37454
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>gb|AC162380.4| Pan troglodytes BAC clone CH251-629G18 from chromosome 7, complete
             sequence
          Length = 210978

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     gggagcacactgtaatagac 28
             ||||||||||||||||||||
Sbjct: 18431 gggagcacactgtaatagac 18412
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>gb|AC119166.16| Mus musculus chromosome 1, clone RP24-393L8, complete sequence
          Length = 163121

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 63    ctcccttccatccttgccagcaca 86
             |||| |||||||||||||||||||
Sbjct: 69242 ctcctttccatccttgccagcaca 69265
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>gb|AC148932.3| Pan troglodytes BAC clone CH251-571G8 from chromosome 7, complete
              sequence
          Length = 232604

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      gggagcacactgtaatagac 28
              ||||||||||||||||||||
Sbjct: 178587 gggagcacactgtaatagac 178606
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>gb|AY423588.1| Reticulitermes santonensis clone RS43 microsatellite sequence
          Length = 563

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 tgcttttgtgaggtacaaac 124
           ||||||||||||||||||||
Sbjct: 415 tgcttttgtgaggtacaaac 434
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>gb|AC007683.5| Homo sapiens BAC clone RP11-401L13 from 7, complete sequence
          Length = 155735

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     gggagcacactgtaatagac 28
             ||||||||||||||||||||
Sbjct: 72616 gggagcacactgtaatagac 72597
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>gb|AC126217.3| Rattus norvegicus 1 BAC CH230-9L4 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 243051

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    tcccttccatccttgccagcacat 87
             |||||||| |||||||||||||||
Sbjct: 21284 tcccttccttccttgccagcacat 21307
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>gb|AC142337.1| Pan troglodytes BAC clone RP43-39F23 from 7, complete sequence
          Length = 157646

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      gggagcacactgtaatagac 28
              ||||||||||||||||||||
Sbjct: 110435 gggagcacactgtaatagac 110416
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>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   cttccctagctgcagatcaa 258
             ||||||||||||||||||||
Sbjct: 23908 cttccctagctgcagatcaa 23927
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>emb|AL596225.11| Human DNA sequence from clone RP11-30D7 on chromosome 1 Contains part
             of the gene for a novel protein (FLJ31862, FLJ22091,
             FLJ10597) and two CpG islands, complete sequence
          Length = 148750

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tctcccttccatccttgcca 81
             ||||||||||||||||||||
Sbjct: 32989 tctcccttccatccttgcca 33008
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>emb|AL358512.9| Human DNA sequence from clone RP11-102M16 on chromosome 1 Contains the
             3' end of the gene for interleukin 12 receptor beta 2
             (IL12RB2) and the 3' end of the gene for PAI-1
             mRNA-binding protein (PAI-RBP1), complete sequence
          Length = 45562

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   cagcctgattagaatgaatt 149
             ||||||||||||||||||||
Sbjct: 35204 cagcctgattagaatgaatt 35223
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>emb|AL031782.1|HS708F5 Human DNA sequence from clone RP4-708F5 on chromosome 6p11.2-12.3
              Contains part of the COL21A1 gene for collagen, type XXI,
              alpha 1 (collagen XXI, collagen, type XX, alpha 1, COLA1L,
              COL20A1, DKFZp564B052), complete sequence
          Length = 126501

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     ctctgaatacacacttgaca 55
              ||||||||||||||||||||
Sbjct: 108971 ctctgaatacacacttgaca 108990
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>gb|AC078880.27| Homo sapiens 12 BAC RP11-116D17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 130824

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    catccttgccagcacatcta 90
             ||||||||||||||||||||
Sbjct: 40770 catccttgccagcacatcta 40789
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>tpg|BK001791.1| TPA: TPA_inf: Bos taurus RTN2-C (RTN2) mRNA, complete cds
          Length = 1207

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 57  ttccatctcccttccatccttgcc 80
           ||||||||||||||||||| ||||
Sbjct: 744 ttccatctcccttccatccctgcc 767
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>gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, complete sequence
          Length = 138416

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    tatggtcactgttgcctaag 389
              ||||||||||||||||||||
Sbjct: 136973 tatggtcactgttgcctaag 136992
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>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete
              cds, alternatively spliced
          Length = 381696

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     ctctgaatacacacttgaca 55
              ||||||||||||||||||||
Sbjct: 168336 ctctgaatacacacttgaca 168317
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>gb|AC161278.2| Pan troglodytes BAC clone CH251-486B7 from chromosome 7, complete
              sequence
          Length = 211383

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      gggagcacactgtaatagac 28
              ||||||||||||||||||||
Sbjct: 146439 gggagcacactgtaatagac 146458
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>gb|AC148835.3| Pan troglodytes BAC clone CH251-25M11 from chromosome 7, complete
             sequence
          Length = 154596

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     gggagcacactgtaatagac 28
             ||||||||||||||||||||
Sbjct: 38100 gggagcacactgtaatagac 38119
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>emb|CR383658.1| Human chromosome 14 DNA sequence BAC R-754I20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178323

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   tttgtgaggtacaaacagaa 128
             ||||||||||||||||||||
Sbjct: 36415 tttgtgaggtacaaacagaa 36396
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>emb|CR383657.1| Human chromosome 14 DNA sequence BAC R-491G9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176745

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    tttgtgaggtacaaacagaa 128
              ||||||||||||||||||||
Sbjct: 154478 tttgtgaggtacaaacagaa 154459
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>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence
          Length = 190701

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    tatggtcactgttgcctaag 389
              ||||||||||||||||||||
Sbjct: 164459 tatggtcactgttgcctaag 164440
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>gb|AC016945.22| Homo sapiens 3 BAC RP11-31L6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96001

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   gttcttcaatctggaaatgg 336
             ||||||||||||||||||||
Sbjct: 83530 gttcttcaatctggaaatgg 83511
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>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1217_C01
          Length = 100180

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ctaagtaaatgatacattgc 107
             ||||||||||||||||||||
Sbjct: 25232 ctaagtaaatgatacattgc 25251
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>gb|AC006379.2|AC006379 Homo sapiens BAC clone RP11-456N16 from 7p15.1-p13, complete sequence
          Length = 202719

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    gggagcacactgtaatagac 28
            ||||||||||||||||||||
Sbjct: 2653 gggagcacactgtaatagac 2672
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>ref|NM_182656.1| Bos taurus reticulon 2 (RTN2), mRNA
          Length = 1207

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 57  ttccatctcccttccatccttgcc 80
           ||||||||||||||||||| ||||
Sbjct: 744 ttccatctcccttccatccctgcc 767
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>dbj|AB078046.1| Flexibacter canadensis gene for 16S rRNA, strain:IFO 15130
          Length = 1475

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 tcaattgggggatagccttc 274
           ||||||||||||||||||||
Sbjct: 106 tcaattgggggatagccttc 125
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>gb|AC005400.1|AC005400 Homo sapiens clone UWGC:g1564a310 from 7p14-15, complete sequence
          Length = 42393

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    gggagcacactgtaatagac 28
            ||||||||||||||||||||
Sbjct: 8071 gggagcacactgtaatagac 8090
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>gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromosome unknown, complete
             sequence
          Length = 228494

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   acaacaaatacactcttaac 362
             ||||||||||||||||||||
Sbjct: 13655 acaacaaatacactcttaac 13636
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>gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromosome unknown, complete
             sequence
          Length = 180657

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   acaacaaatacactcttaac 362
             ||||||||||||||||||||
Sbjct: 53253 acaacaaatacactcttaac 53272
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>gb|M62793.1|FBCRRDA F.canadensis 16S ribosomal RNA
          Length = 1471

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 tcaattgggggatagccttc 274
           ||||||||||||||||||||
Sbjct: 136 tcaattgggggatagccttc 155
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>dbj|AP000539.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c72E11
          Length = 42207

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   tttgtgaggtacaaacagaa 128
             ||||||||||||||||||||
Sbjct: 19873 tttgtgaggtacaaacagaa 19854
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>emb|AL591892.4| Mouse DNA sequence from clone RP23-422F22 on chromosome 15, complete
             sequence
          Length = 113798

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 88    ctaagtaaatgatacattgctttt 111
             |||||||||||||||||| |||||
Sbjct: 91466 ctaagtaaatgatacattactttt 91489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,660,316
Number of Sequences: 3902068
Number of extensions: 3660316
Number of successful extensions: 77985
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77831
Number of HSP's gapped (non-prelim): 154
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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