ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26c05 |
|---|---|
| Clone Library Name | barley_pub |
>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC| 2.7.11.1) Length = 901 Score = 68.2 bits (165), Expect = 5e-12 Identities = 32/33 (96%), Positives = 32/33 (96%) Frame = -3 Query: 406 RNVGSSIGDGLRSLEEEIGPASPQENLYLQHNF 308 RNVGSSIGDGLRSLEEEI PASPQENLYLQHNF Sbjct: 869 RNVGSSIGDGLRSLEEEIAPASPQENLYLQHNF 901
>CUTC_TREDE (Q73KH5) Copper homeostasis protein cutC| Length = 246 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 44 KTTTHLHVSASYRTRLINWGHSTYKYKWQL*DDRINLQRNA 166 K THL V A R R + +S+Y+YK L D ++ + A Sbjct: 49 KKETHLEVMAMVRPRAAGFFYSSYEYKTMLEDAKLFIDNGA 89
>PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A)| Length = 387 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Frame = +2 Query: 65 VSASYRTRLINWGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 223 + +SY T +NW +Y+ WQ+ D +++ C S Q + L S++ Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290 Query: 224 NGQSNRSQSLNLKRQTVSMFSA 289 N QS S NL + V SA Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312
>PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Pepsin A)| Length = 387 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Frame = +2 Query: 65 VSASYRTRLINWGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 223 + +SY T +NW +Y+ WQ+ D +++ C S Q + L S++ Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290 Query: 224 NGQSNRSQSLNLKRQTVSMFSA 289 N QS S NL + V SA Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312
>SYFB_BORPE (Q7VVR5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +1 Query: 307 RSCAASTGSPVETPAQSLPPVTADHLL 387 R AA TG+P+ PA PVT DH L Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203
>SYFB_BORPA (Q7W7C6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +1 Query: 307 RSCAASTGSPVETPAQSLPPVTADHLL 387 R AA TG+P+ PA PVT DH L Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203
>SYFB_BORBR (Q7WKR4) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +1 Query: 307 RSCAASTGSPVETPAQSLPPVTADHLL 387 R AA TG+P+ PA PVT DH L Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203
>UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 262 Score = 28.9 bits (63), Expect = 3.0 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -1 Query: 294 RSAENMETVCRF--KFRLCDLLLWPFRREDLAI*STYWKDF*HLEAFLCRLIRS 139 + E+++ V R + R+ + LLW +L TYW DF ++ L R IRS Sbjct: 201 KELEDIDLVIRSSGEIRISNFLLWHIAYSELFFVDTYWPDFRKID--LWRAIRS 252
>SYL_MYCTU (P67510) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 969 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = -2 Query: 365 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 240 GGRDWA ++ GE V+ L+ D L W P VL+++ VT Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256
>SYL_MYCBO (P67511) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 969 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = -2 Query: 365 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 240 GGRDWA ++ GE V+ L+ D L W P VL+++ VT Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256
>POLG_RHDVS (Q86117) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = +3 Query: 63 TYLRATEQDSSTGAI----PLINTSGNYRTTESIYKEMPPDAKNPSSTY 197 T ++A E +TGA P NTSG+ +SIY + A+NP+ + Sbjct: 2136 TTVQAYELGFATGAPGNLQPTTNTSGSQTVAKSIYAVVTGTAQNPAGLF 2184
>POLG_RHDVA (Q86119) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = +3 Query: 63 TYLRATEQDSSTGAI----PLINTSGNYRTTESIYKEMPPDAKNPSSTY 197 T ++A E +TGA P NTSG+ +SIY + A+NP+ + Sbjct: 2136 TTVQAYELGFATGAPGNLQPTTNTSGSQTVAKSIYAVVTGTAQNPAGLF 2184
>PEPA3_RABIT (P27822) Pepsin-3 precursor (EC 3.4.23.1) (Pepsin III) (Pepsin A)| Length = 387 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = +2 Query: 65 VSASYRTRLINWGHSTYKYKWQL*DDRINLQRNASRC*KSFQYVLYIARSSL 220 + +SY T +NW +Y+ WQ+ D I + C S Q ++ S L Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITLDSITMDGETIACADSCQAIVDTGTSLL 282
>DPYL4_HUMAN (O14531) Dihydropyrimidinase-related protein 4 (DRP-4) (Collapsin| response mediator protein 3) (CRMP-3) (UNC33-like phosphoprotein 4) (ULIP4 protein) Length = 572 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +1 Query: 268 DGFHVFS*SWHFIRSCAASTGSPVETPAQSLPPVTADHLLC 390 DG H +S +W A + V +P + P TADHL C Sbjct: 286 DGSHYWSKNW-------AKAAAFVTSPPVNPDPTTADHLTC 319
>PEPA_HUMAN (P00790) Pepsin A precursor (EC 3.4.23.1)| Length = 388 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = +2 Query: 65 VSASYRTRLINWGHSTYKYKWQL*DDRINLQRNASRC*KSFQYVLYIARSSL 220 + +SY T +NW T + WQ+ D I + A C + Q ++ S L Sbjct: 232 IDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAIACAEGCQAIVDTGTSLL 283
>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)| (153 kDa nucleoporin) Length = 1468 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -1 Query: 327 CTCSTTSDEMPRSAENME 274 C+CS +DE+PR EN E Sbjct: 67 CSCSVNADEVPRWPENRE 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,746,991 Number of Sequences: 219361 Number of extensions: 1183338 Number of successful extensions: 3332 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3251 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3330 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
