ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 123 5e-25
2gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genom... 123 5e-25
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
4dbj|AK101339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 5e-25
5dbj|AB057787.1| Oryza sativa OsCR4 gene, complete cds 123 5e-25
6gb|AY110360.1| Zea mays CL2011_1 mRNA sequence 111 2e-21
7gb|U67422.1|ZMU67422 Zea mays CRINKLY4 precursor (cr4) mRNA, com... 111 2e-21
8ref|XM_468998.1| Oryza sativa (japonica cultivar-group), mRNA 100 7e-18
9gb|AY484589.1| Musa acuminata clone MuH9, genomic sequence 60 6e-06
10gb|AC010623.10| Homo sapiens chromosome 5 clone CTD-2093G19, com... 44 0.35
11gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome... 42 1.4
12gb|AC009393.5| Drosophila melanogaster clone BACR17F05, complete... 42 1.4
13gb|AC018479.2|AC018479 Drosophila melanogaster, chromosome 3R, r... 42 1.4
14gb|AE003697.4| Drosophila melanogaster chromosome 3R, section 35... 42 1.4
15ref|NM_112562.3| Arabidopsis thaliana unknown protein AT3G16860 ... 40 5.5
16emb|AJ781197.1| Influenza B virus (B/Hong Kong/330/01) partial P... 40 5.5
17emb|AJ781196.1| Influenza B virus (B/Trieste/28/02) partial PB2 ... 40 5.5
18emb|AJ781192.1| Influenza B virus (B/Sichuan/379/99) partial PB2... 40 5.5
19emb|Z75889.1|HS267P19 Human DNA sequence from clone RP1-267P19 o... 40 5.5
20emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C2... 40 5.5
21gb|AC161258.2| Mus musculus BAC clone RP23-457H24 from chromosom... 40 5.5
22gb|AC104819.4| Homo sapiens BAC clone RP11-731D1 from 4, complet... 40 5.5
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
24emb|BX823830.1|CNS0A7F9 Arabidopsis thaliana Full-length cDNA Co... 40 5.5
25gb|AC068196.4| Homo sapiens BAC clone RP11-685J19 from 2, comple... 40 5.5
26dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
27dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
28gb|AY504607.1| Influenza B virus (B/Hong Kong/330/2001) basic po... 40 5.5
29gb|AY377788.1| Leishmania donovani promastigote IFN-gamma releas... 40 5.5
30gb|AY504615.1| Influenza B virus (B/Hong Kong/330/2001 egg adapt... 40 5.5
31dbj|AP001308.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 5.5
32emb|Y14424.1|ATSEB2 Arabidopsis thaliana mRNA for hypothetical p... 40 5.5
33emb|AL353724.11| Human DNA sequence from clone RP11-448I13 on ch... 40 5.5
34gb|AC102860.13| Mus musculus chromosome 3, clone RP24-511H12, co... 40 5.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  123 bits (62), Expect = 5e-25
 Identities = 110/126 (87%)
 Strand = Plus / Minus

                                                                            
Query: 281      ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 340
                |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 24307141 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 24307082

                                                                            
Query: 341      agacgccggcccaatctcttcctccagtgaccgcagaccatctcctatgctgctcccgac 400
                 || ||||| | ||| ||||||||||| |||||||  ||||| |||||||||||||| ||
Sbjct: 24307081 tgaggccgggctaatttcttcctccagcgaccgcaatccatcacctatgctgctcccaac 24307022

                      
Query: 401      attcct 406
                 |||||
Sbjct: 24307021 gttcct 24307016



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 149      aatctacaaagaaatgcctccagatgctaaaaatccttccagt 191
                ||||||||||||||||||||| | |||||||| | ||||||||
Sbjct: 24307331 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 24307289
to top
>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete
             sequence
          Length = 171664

 Score =  123 bits (62), Expect = 5e-25
 Identities = 110/126 (87%)
 Strand = Plus / Plus

                                                                         
Query: 281   ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 340
             |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 73483 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 73542

                                                                         
Query: 341   agacgccggcccaatctcttcctccagtgaccgcagaccatctcctatgctgctcccgac 400
              || ||||| | ||| ||||||||||| |||||||  ||||| |||||||||||||| ||
Sbjct: 73543 tgaggccgggctaatttcttcctccagcgaccgcaatccatcacctatgctgctcccaac 73602

                   
Query: 401   attcct 406
              |||||
Sbjct: 73603 gttcct 73608



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 149   aatctacaaagaaatgcctccagatgctaaaaatccttccagt 191
             ||||||||||||||||||||| | |||||||| | ||||||||
Sbjct: 73293 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 73335
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  123 bits (62), Expect = 5e-25
 Identities = 110/126 (87%)
 Strand = Plus / Minus

                                                                            
Query: 281      ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 340
                |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 24224610 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 24224551

                                                                            
Query: 341      agacgccggcccaatctcttcctccagtgaccgcagaccatctcctatgctgctcccgac 400
                 || ||||| | ||| ||||||||||| |||||||  ||||| |||||||||||||| ||
Sbjct: 24224550 tgaggccgggctaatttcttcctccagcgaccgcaatccatcacctatgctgctcccaac 24224491

                      
Query: 401      attcct 406
                 |||||
Sbjct: 24224490 gttcct 24224485



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                           
Query: 149      aatctacaaagaaatgcctccagatgctaaaaatccttccagt 191
                ||||||||||||||||||||| | |||||||| | ||||||||
Sbjct: 24224800 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 24224758
to top
>dbj|AK101339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J17, full
            insert sequence
          Length = 3772

 Score =  123 bits (62), Expect = 5e-25
 Identities = 110/126 (87%)
 Strand = Plus / Minus

                                                                        
Query: 281  ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 340
            |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 3406 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 3347

                                                                        
Query: 341  agacgccggcccaatctcttcctccagtgaccgcagaccatctcctatgctgctcccgac 400
             || ||||| | ||| ||||||||||| |||||||  ||||| |||||||||||||| ||
Sbjct: 3346 tgaggccgggctaatttcttcctccagcgaccgcaatccatcacctatgctgctcccaac 3287

                  
Query: 401  attcct 406
             |||||
Sbjct: 3286 gttcct 3281



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 149  aatctacaaagaaatgcctccagatgctaaaaatccttccagt 191
            ||||||||||||||||||||| | |||||||| | ||||||||
Sbjct: 3596 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 3554
to top
>dbj|AB057787.1| Oryza sativa OsCR4 gene, complete cds
          Length = 3859

 Score =  123 bits (62), Expect = 5e-25
 Identities = 110/126 (87%)
 Strand = Plus / Minus

                                                                        
Query: 281  ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 340
            |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 3534 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 3475

                                                                        
Query: 341  agacgccggcccaatctcttcctccagtgaccgcagaccatctcctatgctgctcccgac 400
             || ||||| | ||| ||||||||||| |||||||  ||||| |||||||||||||| ||
Sbjct: 3474 tgaggccgggctaatttcttcctccagcgaccgcaatccatcacctatgctgctcccaac 3415

                  
Query: 401  attcct 406
             |||||
Sbjct: 3414 gttcct 3409



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 149  aatctacaaagaaatgcctccagatgctaaaaatccttccagt 191
            ||||||||||||||||||||| | |||||||| | ||||||||
Sbjct: 3724 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 3682
to top
>gb|AY110360.1| Zea mays CL2011_1 mRNA sequence
          Length = 3324

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                        
Query: 299  atttcatcagaagttgtgctgcaagtacaggttctcctgtggagacgccggcccaatctc 358
            ||||| |||||||||||||||||||||||||||||| ||||| || || ||  | || ||
Sbjct: 2868 atttcttcagaagttgtgctgcaagtacaggttctcttgtggtgaagctggagcgatttc 2809

                                                            
Query: 359  ttcctccagtgaccgcagaccatctcctatgctgctcccgacattcct 406
            |||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct: 2808 ttcctccagtgaccgcagtccgtcacctatgctgctcccgacgttcct 2761
to top
>gb|U67422.1|ZMU67422 Zea mays CRINKLY4 precursor (cr4) mRNA, complete cds
          Length = 3346

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                        
Query: 299  atttcatcagaagttgtgctgcaagtacaggttctcctgtggagacgccggcccaatctc 358
            ||||| |||||||||||||||||||||||||||||| ||||| || || ||  | || ||
Sbjct: 2868 atttcttcagaagttgtgctgcaagtacaggttctcttgtggtgaagctggagcgatttc 2809

                                                            
Query: 359  ttcctccagtgaccgcagaccatctcctatgctgctcccgacattcct 406
            |||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct: 2808 ttcctccagtgaccgcagtccgtcacctatgctgctcccgacgttcct 2761
to top
>ref|XM_468998.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2706

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                        
Query: 305  tcagaagttgtgctgcaagtacaggttctcctgtggagacgccggcccaatctcttcctc 364
            ||||||||||||||||||||||||||| ||||| || || ||||| | ||| ||||||||
Sbjct: 2706 tcagaagttgtgctgcaagtacaggttttcctgcggtgaggccgggctaatttcttcctc 2647

                                                      
Query: 365  cagtgaccgcagaccatctcctatgctgctcccgacattcct 406
            ||| |||||||  ||||| |||||||||||||| || |||||
Sbjct: 2646 cagcgaccgcaatccatcacctatgctgctcccaacgttcct 2605
to top
>gb|AY484589.1| Musa acuminata clone MuH9, genomic sequence
          Length = 82723

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                         
Query: 305   tcagaagttgtgctgcaagtacaggttctcctgtggagacgccggcccaatctcttcctc 364
             |||||||||||| |||||| |||| ||||||||||| || || || || |||||||||||
Sbjct: 38972 tcagaagttgtgttgcaagaacagattctcctgtggggatgctggtccgatctcttcctc 39031

               
Query: 365   ca 366
             ||
Sbjct: 39032 ca 39033
to top
>gb|AC010623.10| Homo sapiens chromosome 5 clone CTD-2093G19, complete sequence
          Length = 122505

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 298   catttcatcagaagttgtgctg 319
             ||||||||||||||||||||||
Sbjct: 43055 catttcatcagaagttgtgctg 43076
to top
>gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome 8, complete sequence
          Length = 205525

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 350    cccaatctcttcctccagtga 370
              |||||||||||||||||||||
Sbjct: 123611 cccaatctcttcctccagtga 123631
to top
>gb|AC009393.5| Drosophila melanogaster clone BACR17F05, complete sequence
          Length = 198037

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 22    ttgcagggaaaccaacaacagaaag 46
             |||||||| ||||||||||||||||
Sbjct: 22317 ttgcagggcaaccaacaacagaaag 22341
to top
>gb|AC018479.2|AC018479 Drosophila melanogaster, chromosome 3R, region 87D-87D, BAC clone
              BACR09O13, complete sequence
          Length = 174677

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 22     ttgcagggaaaccaacaacagaaag 46
              |||||||| ||||||||||||||||
Sbjct: 151921 ttgcagggcaaccaacaacagaaag 151945
to top
>gb|AE003697.4| Drosophila melanogaster chromosome 3R, section 35 of 118 of the complete
              sequence
          Length = 221239

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 22     ttgcagggaaaccaacaacagaaag 46
              |||||||| ||||||||||||||||
Sbjct: 163610 ttgcagggcaaccaacaacagaaag 163634
to top
>ref|NM_112562.3| Arabidopsis thaliana unknown protein AT3G16860 mRNA, complete cds
          Length = 2361

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  agaagttgtgctgcaagtac 326
            ||||||||||||||||||||
Sbjct: 1475 agaagttgtgctgcaagtac 1456
to top
>emb|AJ781197.1| Influenza B virus (B/Hong Kong/330/01) partial PB2 gene for
           polymerase 2, genomic RNA, isolate B/Hong Kong/330/01
          Length = 2319

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 caaagaaatgcctccagatg 174
           ||||||||||||||||||||
Sbjct: 468 caaagaaatgcctccagatg 487
to top
>emb|AJ781196.1| Influenza B virus (B/Trieste/28/02) partial PB2 gene for polymerase
           2, genomic RNA, isolate B/Trieste/28/02
          Length = 2298

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 caaagaaatgcctccagatg 174
           ||||||||||||||||||||
Sbjct: 447 caaagaaatgcctccagatg 466
to top
>emb|AJ781192.1| Influenza B virus (B/Sichuan/379/99) partial PB2 gene for
           polymerase 2, genomic RNA, isolate B/Sichuan/379/99
          Length = 2319

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 caaagaaatgcctccagatg 174
           ||||||||||||||||||||
Sbjct: 468 caaagaaatgcctccagatg 487
to top
>emb|Z75889.1|HS267P19 Human DNA sequence from clone RP1-267P19 on chromosome 13 Contains part
             of the gene for androgen-induced prostate proliferative
             shutoff associated protein (AS3) (CG008, FLJ23236,
             KIAA0979) and two CpG islands, complete sequence
          Length = 113704

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    caacaacagaaagacaacta 53
             ||||||||||||||||||||
Sbjct: 91568 caacaacagaaagacaacta 91549
to top
>emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C21 on chromosome 1p22.2-31.1
             Contains STSs and GSSs, complete sequence
          Length = 143163

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   attccacttataaatacaag 124
             ||||||||||||||||||||
Sbjct: 65126 attccacttataaatacaag 65107
to top
>gb|AC161258.2| Mus musculus BAC clone RP23-457H24 from chromosome 17, complete sequence
          Length = 201842

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    tacaaagaaatgcctccaga 172
              ||||||||||||||||||||
Sbjct: 100627 tacaaagaaatgcctccaga 100608
to top
>gb|AC104819.4| Homo sapiens BAC clone RP11-731D1 from 4, complete sequence
          Length = 129203

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   ccaaagcaacaggtcacaaa 248
             ||||||||||||||||||||
Sbjct: 93753 ccaaagcaacaggtcacaaa 93772
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 146      atcaatctacaaagaaatgc 165
                ||||||||||||||||||||
Sbjct: 26177782 atcaatctacaaagaaatgc 26177763
to top
>emb|BX823830.1|CNS0A7F9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS80ZD01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  agaagttgtgctgcaagtac 326
            ||||||||||||||||||||
Sbjct: 1474 agaagttgtgctgcaagtac 1455
to top
>gb|AC068196.4| Homo sapiens BAC clone RP11-685J19 from 2, complete sequence
          Length = 162566

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 156    aaagaaatgcctccagatgctaaaaatc 183
              |||||||||||||| |||| ||||||||
Sbjct: 115825 aaagaaatgcctcctgatgttaaaaatc 115852
to top
>dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0048B08
          Length = 146874

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   atcaatctacaaagaaatgc 165
             ||||||||||||||||||||
Sbjct: 74609 atcaatctacaaagaaatgc 74590
to top
>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OSJNBb0012J10
          Length = 132375

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 atcaatctacaaagaaatgc 165
           ||||||||||||||||||||
Sbjct: 623 atcaatctacaaagaaatgc 604
to top
>gb|AY504607.1| Influenza B virus (B/Hong Kong/330/2001) basic polymerase subunit 2
           (PB2) gene, complete cds
          Length = 2396

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 caaagaaatgcctccagatg 174
           ||||||||||||||||||||
Sbjct: 482 caaagaaatgcctccagatg 501
to top
>gb|AY377788.1| Leishmania donovani promastigote IFN-gamma release-inducing antigen,
            complete sequence
          Length = 1953

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 26   agggaaaccaacaacagaaagaca 49
            ||||||| ||||||||||||||||
Sbjct: 1295 agggaaaacaacaacagaaagaca 1318
to top
>gb|AY504615.1| Influenza B virus (B/Hong Kong/330/2001 egg adapted) basic
           polymerase subunit 2 (PB2) gene, complete cds
          Length = 2396

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 155 caaagaaatgcctccagatg 174
           ||||||||||||||||||||
Sbjct: 482 caaagaaatgcctccagatg 501
to top
>dbj|AP001308.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUH15
          Length = 11291

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  agaagttgtgctgcaagtac 326
            ||||||||||||||||||||
Sbjct: 3352 agaagttgtgctgcaagtac 3371
to top
>emb|Y14424.1|ATSEB2 Arabidopsis thaliana mRNA for hypothetical protein SEB2, partial
          Length = 1244

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 agaagttgtgctgcaagtac 326
           ||||||||||||||||||||
Sbjct: 382 agaagttgtgctgcaagtac 363
to top
>emb|AL353724.11| Human DNA sequence from clone RP11-448I13 on chromosome 13, complete
              sequence
          Length = 120652

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     caacaacagaaagacaacta 53
              ||||||||||||||||||||
Sbjct: 110707 caacaacagaaagacaacta 110688
to top
>gb|AC102860.13| Mus musculus chromosome 3, clone RP24-511H12, complete sequence
          Length = 202315

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   agaagttgtgctgcaagtacaggt 330
             ||||||||||||| ||||||||||
Sbjct: 72030 agaagttgtgctgaaagtacaggt 72053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,774,284
Number of Sequences: 3902068
Number of extensions: 3774284
Number of successful extensions: 77319
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77206
Number of HSP's gapped (non-prelim): 111
length of query: 408
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 386
effective length of database: 17,147,199,772
effective search space: 6618819111992
effective search space used: 6618819111992
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top