ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26c02 |
|---|---|
| Clone Library Name | barley_pub |
>TOP1_SCHPO (P07799) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 814 Score = 32.3 bits (72), Expect = 0.59 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Frame = -2 Query: 459 SDKPRRKRFNPSKTTTLIRLCSRCKQVGHNKATCEAAFL*TKEFLYLQYV*QVH--PEAA 286 +D + F + +++C C HN KEF + H + Sbjct: 244 TDHAKNPVFQDNFFRDFLKVCDECN-FNHN----------IKEFSKCDFTQMFHHFEQKR 292 Query: 285 DERESFPAKIGREKEKASRQKKEEVERESSWWCLL 181 +E++S P +E++KA +QKK+E E E WC+L Sbjct: 293 EEKKSMP----KEQKKAIKQKKDE-EEEKYKWCIL 322
>GLSA_CAUCR (Q9ABF2) Glutaminase (EC 3.5.1.2)| Length = 306 Score = 29.3 bits (64), Expect = 5.0 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +2 Query: 62 PLQVTAFISYKQTNNGVNSCMSST-VITHPPSLVLSIYCTYNRHHHELSLSTSSFFCREA 238 P T+ +++ N + S M + ITH P V++ YC + +LS S CR+ Sbjct: 153 PAVATSELAHAWQNRAIASLMRAKGTITHDPEAVVAAYC------RQCALSMS---CRQL 203 Query: 239 FSFSLPIFAG 268 LP+ AG Sbjct: 204 ARAFLPLAAG 213
>PORC_METTH (O27772) Pyruvate synthase subunit porC (EC 1.2.7.1) (Pyruvate| oxidoreductase gamma chain) (POR) (Pyruvic-ferredoxin oxidoreductase gamma subunit) Length = 180 Score = 29.3 bits (64), Expect = 5.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -2 Query: 279 RESFPAKIGREKEKASRQKKEEVER 205 +E+FP KIG + +A+R EE+E+ Sbjct: 151 KETFPGKIGEKNAEAARMAYEEIEK 175
>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)| (Pam/highwire/rpm-1 protein) (Regulator of presynaptic morphology protein 1) (Synapse defective protein 3) Length = 3766 Score = 29.3 bits (64), Expect = 5.0 Identities = 11/29 (37%), Positives = 21/29 (72%) Frame = -2 Query: 282 ERESFPAKIGREKEKASRQKKEEVERESS 196 +RE P K ++EKA + +++E+E+ES+ Sbjct: 2248 QRELIPLKADTDREKAVKLRRKEIEKESN 2276
>RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-binding motif protein| 25) (RNA-binding region-containing protein 7) (Protein S164) Length = 784 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = -1 Query: 280 KRELPSENRKREREGFPAKEGRSRERE 200 ++E+ E R+RERE +E R RERE Sbjct: 243 RQEIEKERRERERERERERERRERERE 269
>Y688_RICPR (Q9ZCN5) Hypothetical protein RP688| Length = 297 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 79 LHII*TNKQRCQFMHVFYSNYPSPFFGSLHLLY 177 L I +K++ +F+HV Y YP+ FF H LY Sbjct: 188 LDIFLFHKEKDKFIHVIYDKYPNDFFYD-HELY 219
>RPOZ_STRP8 (P68842) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 104 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = -2 Query: 303 VHPEAADERESFPAKIGRE---KEKASRQKKEEVERE 202 +HP+ + +RE+ AKI E KE+ R+ KE++ +E Sbjct: 60 IHPDPSAKREAVRAKIEAERLAKEEEERKIKEQIAKE 96
>RPOZ_STRP6 (Q5XAP2) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 104 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = -2 Query: 303 VHPEAADERESFPAKIGRE---KEKASRQKKEEVERE 202 +HP+ + +RE+ AKI E KE+ R+ KE++ +E Sbjct: 60 IHPDPSAKREAVRAKIEAERLAKEEEERKIKEQIAKE 96
>RPOZ_STRP3 (P68841) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 104 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = -2 Query: 303 VHPEAADERESFPAKIGRE---KEKASRQKKEEVERE 202 +HP+ + +RE+ AKI E KE+ R+ KE++ +E Sbjct: 60 IHPDPSAKREAVRAKIEAERLAKEEEERKIKEQIAKE 96
>RPOZ_STRP1 (P68840) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 104 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = -2 Query: 303 VHPEAADERESFPAKIGRE---KEKASRQKKEEVERE 202 +HP+ + +RE+ AKI E KE+ R+ KE++ +E Sbjct: 60 IHPDPSAKREAVRAKIEAERLAKEEEERKIKEQIAKE 96
>TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-) (Tyr-DNA| phosphodiesterase 1) Length = 608 Score = 28.5 bits (62), Expect = 8.6 Identities = 20/92 (21%), Positives = 34/92 (36%) Frame = -2 Query: 459 SDKPRRKRFNPSKTTTLIRLCSRCKQVGHNKATCEAAFL*TKEFLYLQYV*QVHPEAADE 280 SD+ ++ P K +T LC+R + TC A +AA + Sbjct: 15 SDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEA-----------------QKAAHK 57 Query: 279 RESFPAKIGREKEKASRQKKEEVERESSWWCL 184 R+ P K ++++ +E WCL Sbjct: 58 RKISPVKFSNTDSVLPPKRQKSGSQEDLGWCL 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,428,178 Number of Sequences: 219361 Number of extensions: 1174486 Number of successful extensions: 3998 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3739 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3978 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
