Clone Name | rbastl26c02 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_194512.1| Oryza sativa (japonica cultivar-group) putative maize transposon MuDR mudrA-like protein (OSJNBa0071K19.12), mRNA Length = 2814 Score = 119 bits (60), Expect = 8e-24 Identities = 96/108 (88%) Strand = Plus / Minus Query: 353 gcttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataaga 412 ||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||| || | Sbjct: 2804 gcttcacaggttgccttattgtgtcctgcttgcttgcacctgctacagagccgtacaaca 2745 Query: 413 gtggttgtcttgctggggttaaaccgcttccttctcggtttatctgat 460 || | | ||||| |||||||||| ||||||||||| |||||||||||| Sbjct: 2744 gtaggtatcttgttggggttaaaacgcttccttctgggtttatctgat 2697
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 119 bits (60), Expect = 8e-24 Identities = 96/108 (88%) Strand = Plus / Plus Query: 353 gcttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataaga 412 ||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||| || | Sbjct: 105848 gcttcacaggttgccttattgtgtcctgcttgcttgcacctgctacagagccgtacaaca 105907 Query: 413 gtggttgtcttgctggggttaaaccgcttccttctcggtttatctgat 460 || | | ||||| |||||||||| ||||||||||| |||||||||||| Sbjct: 105908 gtaggtatcttgttggggttaaaacgcttccttctgggtttatctgat 105955
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 119 bits (60), Expect = 8e-24 Identities = 96/108 (88%) Strand = Plus / Plus Query: 353 gcttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataaga 412 ||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||| || | Sbjct: 340790 gcttcacaggttgccttattgtgtcctgcttgcttgcacctgctacagagccgtacaaca 340849 Query: 413 gtggttgtcttgctggggttaaaccgcttccttctcggtttatctgat 460 || | | ||||| |||||||||| ||||||||||| |||||||||||| Sbjct: 340850 gtaggtatcttgttggggttaaaacgcttccttctgggtttatctgat 340897
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 119 bits (60), Expect = 8e-24 Identities = 96/108 (88%) Strand = Plus / Plus Query: 353 gcttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataaga 412 ||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||| || | Sbjct: 340790 gcttcacaggttgccttattgtgtcctgcttgcttgcacctgctacagagccgtacaaca 340849 Query: 413 gtggttgtcttgctggggttaaaccgcttccttctcggtttatctgat 460 || | | ||||| |||||||||| ||||||||||| |||||||||||| Sbjct: 340850 gtaggtatcttgttggggttaaaacgcttccttctgggtttatctgat 340897
>dbj|AK111158.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H09, full insert sequence Length = 3614 Score = 119 bits (60), Expect = 8e-24 Identities = 96/108 (88%) Strand = Plus / Minus Query: 353 gcttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataaga 412 ||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||| || | Sbjct: 3257 gcttcacaggttgccttattgtgtcctgcttgcttgcacctgctacagagccgtacaaca 3198 Query: 413 gtggttgtcttgctggggttaaaccgcttccttctcggtttatctgat 460 || | | ||||| |||||||||| ||||||||||| |||||||||||| Sbjct: 3197 gtaggtatcttgttggggttaaaacgcttccttctgggtttatctgat 3150
>dbj|AK072615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C11, full insert sequence Length = 3124 Score = 119 bits (60), Expect = 8e-24 Identities = 96/108 (88%) Strand = Plus / Minus Query: 353 gcttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataaga 412 ||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||| || | Sbjct: 2731 gcttcacaggttgccttattgtgtcctgcttgcttgcacctgctacagagccgtacaaca 2672 Query: 413 gtggttgtcttgctggggttaaaccgcttccttctcggtttatctgat 460 || | | ||||| |||||||||| ||||||||||| |||||||||||| Sbjct: 2671 gtaggtatcttgttggggttaaaacgcttccttctgggtttatctgat 2624
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 119 bits (60), Expect = 8e-24 Identities = 96/108 (88%) Strand = Plus / Plus Query: 353 gcttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataaga 412 ||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||| || | Sbjct: 340787 gcttcacaggttgccttattgtgtcctgcttgcttgcacctgctacagagccgtacaaca 340846 Query: 413 gtggttgtcttgctggggttaaaccgcttccttctcggtttatctgat 460 || | | ||||| |||||||||| ||||||||||| |||||||||||| Sbjct: 340847 gtaggtatcttgttggggttaaaacgcttccttctgggtttatctgat 340894
>gb|AY111395.1| Zea mays CL8718_1 mRNA sequence Length = 621 Score = 105 bits (53), Expect = 1e-19 Identities = 92/105 (87%) Strand = Plus / Plus Query: 352 agcttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataag 411 |||||||||||| ||||||||| | ||| |||||||||||||||| ||||||||||| | Sbjct: 172 agcttcacaggttgccttgttggggcctgcttgcttgcacctgctgcagagccgtattac 231 Query: 412 agtggttgtcttgctggggttaaaccgcttccttctcggtttatc 456 |||| ||||| |||||||||||||||||||||| |||||||| Sbjct: 232 cgtggggatcttgttggggttaaaccgcttccttcttggtttatc 276
>gb|DQ115062.1| Saccharum officinarum clone SCRFHR1007F01 transposon mutator-like, partial sequence Length = 1293 Score = 93.7 bits (47), Expect = 5e-16 Identities = 92/107 (85%) Strand = Plus / Minus Query: 354 cttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataagag 413 ||||||| || ||||||||||| ||| |||||||||||||||| ||||||||||| | | Sbjct: 785 cttcacaagttgccttgttgtggcctgcttgcttgcacctgctgcagagccgtattaccg 726 Query: 414 tggttgtcttgctggggttaaaccgcttccttctcggtttatctgat 460 ||| |||| ||||||||| |||||||||||| |||||||||||| Sbjct: 725 tggggaccttgttggggttaatccgcttccttcttggtttatctgat 679
>gb|DQ115056.1| Saccharum officinarum clone SCQSFL1128E06 transposon hopscotch-like, partial sequence Length = 1176 Score = 85.7 bits (43), Expect = 1e-13 Identities = 88/103 (85%) Strand = Plus / Minus Query: 354 cttcacaggtggccttgttgtgccctacttgcttgcacctgctacagagccgtataagag 413 ||||||| || ||||||||||| ||| |||||||||||||||| ||||||||||| | | Sbjct: 717 cttcacaagttgccttgttgtggcctgcttgcttgcacctgctgcagagccgtattaccg 658 Query: 414 tggttgtcttgctggggttaaaccgcttccttctcggtttatc 456 ||| |||| ||||||||| |||||||||||| |||||||| Sbjct: 657 tggggaccttgttggggttaatccgcttccttcttggtttatc 615
>ref|XM_475169.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3279 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 368 ttgttgtgccctacttgcttgcacct 393 ||||||||||| |||||||||||||| Sbjct: 2834 ttgttgtgcccaacttgcttgcacct 2809
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 368 ttgttgtgccctacttgcttgcacct 393 ||||||||||| |||||||||||||| Sbjct: 71842 ttgttgtgcccaacttgcttgcacct 71817
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 368 ttgttgtgccctacttgcttgcacct 393 ||||||||||| |||||||||||||| Sbjct: 18278630 ttgttgtgcccaacttgcttgcacct 18278605 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 1150150 atatcatataaacaaacaaa 1150131
>gb|AC122535.3| Mus musculus BAC clone RP24-539K4 from chromosome 7, complete sequence Length = 186561 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaac 106 ||||||||||||||||||||| Sbjct: 159036 tcatataaacaaacaaacaac 159056
>gb|AC131116.3| Mus musculus BAC clone RP24-344M21 from chromosome 7, complete sequence Length = 190325 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaac 106 ||||||||||||||||||||| Sbjct: 174790 tcatataaacaaacaaacaac 174770
>emb|AL450407.14| Human DNA sequence from clone RP5-1160J2 on chromosome 1 Contains the 5' end of the gene for a novel protein, complete sequence Length = 18106 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 taaagaaacctctccaagtta 74 ||||||||||||||||||||| Sbjct: 9264 taaagaaacctctccaagtta 9244
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 caaagatgtagcacatttatt 24 ||||||||||||||||||||| Sbjct: 1387886 caaagatgtagcacatttatt 1387906
>gb|AC108941.4| Homo sapiens BAC clone RP11-736K12 from 4, complete sequence Length = 179273 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 cctacttgcttgcacctgcta 397 ||||||||||||||||||||| Sbjct: 5669 cctacttgcttgcacctgcta 5649
>dbj|AK137916.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130039C22 product:unclassifiable, full insert sequence Length = 1018 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ttggttctctccatctactgt 175 ||||||||||||||||||||| Sbjct: 500 ttggttctctccatctactgt 520
>gb|AC017037.10|AC017037 Homo sapiens BAC clone RP11-312A15 from 4, complete sequence Length = 186106 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 ttcatatcatataaacaaaca 100 ||||||||||||||||||||| Sbjct: 66822 ttcatatcatataaacaaaca 66842
>gb|AC139530.3| Homo sapiens chromosome 17, clone RP13-1032I1, complete sequence Length = 159125 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 90 ataaacaaacaaacaacggtgtcaattca 118 |||||||||||||||| |||| ||||||| Sbjct: 60983 ataaacaaacaaacaaaggtgccaattca 61011
>emb|AL805906.7| Mouse DNA sequence from clone RP23-113J20 on chromosome 4, complete sequence Length = 176416 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 atcatataaacaaacaaacaa 105 ||||||||||||||||||||| Sbjct: 149264 atcatataaacaaacaaacaa 149284
>emb|AL671854.14| Mouse DNA sequence from clone RP23-89M15 on chromosome 3, complete sequence Length = 207265 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaac 106 ||||||||||||||||||||| Sbjct: 100875 tcatataaacaaacaaacaac 100855
>emb|AL596062.13| Mouse DNA sequence from clone RP23-284O21 on chromosome 11, complete sequence Length = 155151 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ttggttctctccatctactgt 175 ||||||||||||||||||||| Sbjct: 89769 ttggttctctccatctactgt 89789
>gb|AC115727.10| Mus musculus chromosome 3, clone RP23-30A13, complete sequence Length = 183826 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 1176 tcatataaacaaacaaacaa 1157
>gb|AC103941.12| Mus musculus chromosome 9, clone RP23-430I4, complete sequence Length = 172217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tcctttgtctacagaaaagc 351 |||||||||||||||||||| Sbjct: 138063 tcctttgtctacagaaaagc 138082
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 105761 atatcatataaacaaacaaa 105742
>gb|BC025548.1| Mus musculus solute carrier family 44, member 3, mRNA (cDNA clone MGC:38127 IMAGE:5320841), complete cds Length = 2572 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 2348 tcatataaacaaacaaacaa 2367
>gb|BC010552.1| Mus musculus solute carrier family 44, member 3, mRNA (cDNA clone MGC:7894 IMAGE:3582543), complete cds Length = 2342 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 2118 tcatataaacaaacaaacaa 2137
>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence Length = 226392 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 166789 tcatataaacaaacaaacaa 166808
>gb|U28730.1| Caenorhabditis elegans cosmid K10B2, complete sequence Length = 17344 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 atgcatgtcttctacagtaa 137 |||||||||||||||||||| Sbjct: 15369 atgcatgtcttctacagtaa 15388
>gb|AC102540.7| Mus musculus chromosome 3, clone RP23-98H24, complete sequence Length = 207497 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 102473 tcatataaacaaacaaacaa 102454
>gb|AC124323.10| Mus musculus chromosome 19, clone RP24-444B6, complete sequence Length = 150803 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 319 cagataaagaaattcctttgtctacaga 346 |||||| |||||| |||||||||||||| Sbjct: 72887 cagatacagaaatacctttgtctacaga 72914
>gb|AC113945.26| Mus musculus chromosome 3, clone RP24-96D10, complete sequence Length = 144239 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 cttgcacctgctacagagcc 404 |||||||||||||||||||| Sbjct: 98586 cttgcacctgctacagagcc 98605
>gb|AC136455.3| Mus musculus BAC clone RP24-481H2 from chromosome 6, complete sequence Length = 166458 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 40709 tcatataaacaaacaaacaa 40690
>gb|AC095825.6| Rattus norvegicus 4 BAC CH230-9J6 (Children's Hospital Oakland Research Institute) complete sequence Length = 234084 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 caccactactaaagaaacct 64 |||||||||||||||||||| Sbjct: 145550 caccactactaaagaaacct 145531
>gb|AC164536.5| Mus musculus chromosome 18, clone RP23-425H1, complete sequence Length = 188835 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 9339 tcatataaacaaacaaacaa 9320
>gb|AC114539.8| Mus musculus chromosome 19, clone RP23-62I23, complete sequence Length = 249767 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 136434 tcatataaacaaacaaacaa 136415
>gb|AC116473.13| Mus musculus chromosome 8, clone RP23-385E22, complete sequence Length = 186155 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 catataaacaaacaaacaac 106 |||||||||||||||||||| Sbjct: 82960 catataaacaaacaaacaac 82979
>gb|AC124814.10| Mus musculus chromosome 1, clone RP24-119P5, complete sequence Length = 162020 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 catataaacaaacaaacaac 106 |||||||||||||||||||| Sbjct: 135832 catataaacaaacaaacaac 135851
>gb|AC118227.12| Mus musculus chromosome 15, clone RP23-379H6, complete sequence Length = 200663 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 200176 tcatataaacaaacaaacaa 200195
>emb|CT030300.1| Xenopus tropicalis finished cDNA, clone TEgg015o09 Length = 2020 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 atatcatataaacaaacaaacaac 106 ||||||||||| |||||||||||| Sbjct: 1517 atatcatataagcaaacaaacaac 1494
>emb|CT025685.5| Mouse DNA sequence from clone RP24-116B6 on chromosome 9, complete sequence Length = 173933 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tcctttgtctacagaaaagc 351 |||||||||||||||||||| Sbjct: 144970 tcctttgtctacagaaaagc 144951
>gb|BC026385.1| Mus musculus RIKEN cDNA 4930538D17 gene, mRNA (cDNA clone IMAGE:4187305), with apparent retained intron Length = 2251 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 37 tcatataaacaaacaaacaa 18
>emb|Z13985.1|MMCONREG M.musculus control region sequence DNA Length = 12600 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 5084 tcatataaacaaacaaacaa 5103
>gb|AC122266.2| Mus musculus BAC clone RP23-213K18 from 8, complete sequence Length = 195246 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 97208 tcatataaacaaacaaacaa 97189
>gb|AC131751.2| Mus musculus BAC clone RP23-19P8 from 10, complete sequence Length = 185680 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 catatcatataaacaaacaaacaa 105 ||||||| |||||||||||||||| Sbjct: 60755 catatcaaataaacaaacaaacaa 60778
>gb|AC009508.3| Homo sapiens BAC clone RP11-564N1 from 7, complete sequence Length = 119414 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 tgcagataaagaaattcctttgtc 340 |||||||||||||||| ||||||| Sbjct: 25409 tgcagataaagaaattgctttgtc 25386
>gb|AC113595.11| Mus musculus chromosome 15, clone RP23-373B5, complete sequence Length = 235814 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 26858 tcatataaacaaacaaacaa 26877
>gb|AC158362.5| Mus musculus BAC clone RP23-214K5 from chromosome 8, complete sequence Length = 201185 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 152901 tcatataaacaaacaaacaa 152920
>emb|AL365273.25| Human DNA sequence from clone RP11-429G19 on chromosome 10 Contains the 3' end of the ENTPD1 gene for ectonucleoside triphosphate diphosphohydrolase 1, a novel gene, the 3' end of two novel genes (FLJ34077, FLJ39150), complete sequence Length = 191942 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 8117 tcatataaacaaacaaacaa 8098
>gb|AC098641.3| Genomic sequence for Mus musculus, clone RP23-258H17, from chromosome 17, complete sequence Length = 78373 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 53287 tcatataaacaaacaaacaa 53306
>emb|AL049557.19|HSJ773A18 Human DNA sequence from clone RP4-773A18 on chromosome 1p13.2-21.1 Contains a keratin 18 (KRT18) pseudogene, the 3' end of the RAP1A gene for RAP1A member of RAS oncogene family, three novel genes, the DDX20 gene for DEAD (Asp-Glu-Ala-Asp) box polypeptide 20, the 3' end of the KCND3 gene for potassium voltage-gated channel Shal-related subfamily member 3 and two CpG islands, complete sequence Length = 128379 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 acagtaattacccatcccccttct 154 ||||||||| |||||||||||||| Sbjct: 8429 acagtaattccccatcccccttct 8452
>emb|AL078596.8|HSDJ429G5 Human DNA sequence from clone RP3-429G5 on chromosome 6q21-22.1 Contains the 3' end of a novel gene, the NR2E1 gene for nuclear receptor subfamily 2 group E, the 3' end of the SNX3 gene for sorting nexin 3 and four CpG islands, complete sequence Length = 64183 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 7213 tcatataaacaaacaaacaa 7232
>gb|AC105336.14| Mus musculus chromosome 3, clone RP24-277J22, complete sequence Length = 176399 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 152863 tcatataaacaaacaaacaa 152844
>ref|NM_001031168.1| Gallus gallus similar to hypothetical protein BC009331 (LOC422900), mRNA Length = 3245 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 aattcctttgtctacagaaa 348 |||||||||||||||||||| Sbjct: 1675 aattcctttgtctacagaaa 1656
>gb|AC132315.4| Mus musculus BAC clone RP24-234J3 from chromosome 12, complete sequence Length = 181828 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 174215 tcatataaacaaacaaacaa 174196
>gb|AC163344.2| Mus musculus BAC clone RP24-66I20 from chromosome 9, complete sequence Length = 221000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 157145 tcatataaacaaacaaacaa 157126
>emb|AJ720959.1| Gallus gallus mRNA for hypothetical protein, clone 31c10 Length = 3245 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 aattcctttgtctacagaaa 348 |||||||||||||||||||| Sbjct: 1675 aattcctttgtctacagaaa 1656
>gb|AC107015.6| Homo sapiens 3 BAC RP11-124D9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156277 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 69422 atatcatataaacaaacaaa 69403
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 actgcagataaagaaattcc 334 |||||||||||||||||||| Sbjct: 2438179 actgcagataaagaaattcc 2438160
>gb|AC157522.2| Pan troglodytes BAC clone CH251-520I13 from chromosome unknown, complete sequence Length = 221631 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 142122 tcatataaacaaacaaacaa 142103
>gb|AF447584.1|AF447584 Jatropha curcas UDP-glycosyltransfersase mRNA, partial cds Length = 1040 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 144 atcccccttctttggttctctcca 167 |||||| ||||||||||||||||| Sbjct: 802 atcccctttctttggttctctcca 779
>ref|NM_145394.1| Mus musculus solute carrier family 44, member 3 (Slc44a3), mRNA Length = 2572 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 2348 tcatataaacaaacaaacaa 2367
>gb|AC161419.2| Mus musculus BAC clone RP23-405I13 from chromosome 9, complete sequence Length = 213468 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 149467 tcatataaacaaacaaacaa 149486
>gb|AC155824.3| Mus musculus BAC clone RP23-136L1 from chromosome 8, complete sequence Length = 220437 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 catataaacaaacaaacaac 106 |||||||||||||||||||| Sbjct: 36398 catataaacaaacaaacaac 36379
>gb|AC153363.4| Mus musculus BAC clone RP23-5I6 from chromosome 9, complete sequence Length = 185444 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 catataaacaaacaaacaac 106 |||||||||||||||||||| Sbjct: 98994 catataaacaaacaaacaac 98975
>gb|AF391757.1|AF391757 Mus musculus homeodomain protein RINX (Rinx) gene, complete cds Length = 16315 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 catataaacaaacaaacaac 106 |||||||||||||||||||| Sbjct: 4326 catataaacaaacaaacaac 4307
>gb|AC157514.2| Mus musculus BAC clone RP24-281C16 from chromosome 9, complete sequence Length = 191880 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 152767 tcatataaacaaacaaacaa 152786
>dbj|AK015425.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930449A08 product:unclassifiable, full insert sequence Length = 1672 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 1047 tcatataaacaaacaaacaa 1066
>ref|NM_062884.3| Caenorhabditis elegans abnormal cell LINeage family member (lin-23) (lin-23) mRNA, complete cds Length = 2636 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 atgcatgtcttctacagtaa 137 |||||||||||||||||||| Sbjct: 555 atgcatgtcttctacagtaa 574
>gb|AC158682.8| Mus musculus 6 BAC RP23-342D13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 214029 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 168794 tcatataaacaaacaaacaa 168775
>emb|CR352429.1| Gallus gallus finished cDNA, clone ChEST325b24 Length = 1256 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 aattcctttgtctacagaaa 348 |||||||||||||||||||| Sbjct: 66 aattcctttgtctacagaaa 47
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 11192141 atatcatataaacaaacaaa 11192160
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 9498568 atatcatataaacaaacaaa 9498549
>gb|AC136214.4| Mus musculus BAC clone RP23-53G11 from chromosome 10, complete sequence Length = 203909 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 catatcatataaacaaacaaacaa 105 ||||||| |||||||||||||||| Sbjct: 5943 catatcaaataaacaaacaaacaa 5920
>gb|AC021058.16|AC021058 Homo sapiens 12 BAC RP11-373H1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168134 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 108941 tcatataaacaaacaaacaa 108960
>gb|AF275253.1|AF275253 Caenorhabditis elegans LIN-23 (lin-23) mRNA, complete cds Length = 2700 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 atgcatgtcttctacagtaa 137 |||||||||||||||||||| Sbjct: 562 atgcatgtcttctacagtaa 581
>gb|AC108697.3| Homo sapiens 3 BAC RP11-8N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163737 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 153895 atatcatataaacaaacaaa 153876
>gb|AC073947.46| Mus musculus strain C57BL/6J chromosome 9 clone rp23-80d20, complete sequence Length = 247089 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tcctttgtctacagaaaagc 351 |||||||||||||||||||| Sbjct: 2098 tcctttgtctacagaaaagc 2079
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0424A08 Length = 151294 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 31997 atatcatataaacaaacaaa 31978
>dbj|AP005674.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1126F07 Length = 125007 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 6119 atatcatataaacaaacaaa 6138
>emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in linkage group 5, complete sequence Length = 223754 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 tccatctactgtacatacaa 183 |||||||||||||||||||| Sbjct: 10447 tccatctactgtacatacaa 10466
>emb|BX072549.4| Zebrafish DNA sequence from clone CH211-114A17 in linkage group 5, complete sequence Length = 167182 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 tccatctactgtacatacaa 183 |||||||||||||||||||| Sbjct: 42248 tccatctactgtacatacaa 42267
>emb|AL928693.9| Mouse DNA sequence from clone RP23-407K8 on chromosome 2, complete sequence Length = 206478 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 19762 tcatataaacaaacaaacaa 19781
>gb|AC154408.2| Mus musculus BAC clone RP24-259A5 from 16, complete sequence Length = 158312 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 23232 tcatataaacaaacaaacaa 23251
>emb|CR388173.7| Zebrafish DNA sequence from clone DKEYP-109D11 in linkage group 19, complete sequence Length = 55374 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 40462 tcatataaacaaacaaacaa 40481
>dbj|AP004398.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0438G07 Length = 138878 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 32117 atatcatataaacaaacaaa 32136
>gb|AC102562.13| Mus musculus chromosome 18, clone RP23-205H1, complete sequence Length = 210975 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 35889 tcatataaacaaacaaacaa 35908
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ctgggaagctctctctttca 283 |||||||||||||||||||| Sbjct: 644690 ctgggaagctctctctttca 644671
>gb|AC133499.3| Mus musculus BAC clone RP24-248F14 from 8, complete sequence Length = 181064 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 27716 tcatataaacaaacaaacaa 27697
>gb|AC124409.5| Mus musculus BAC clone RP24-262P14 from 8, complete sequence Length = 178779 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 143962 tcatataaacaaacaaacaa 143943
>gb|AC126669.4| Mus musculus BAC clone RP24-457D15 from 9, complete sequence Length = 180081 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 catataaacaaacaaacaac 106 |||||||||||||||||||| Sbjct: 20074 catataaacaaacaaacaac 20055
>gb|AC133195.4| Mus musculus BAC clone RP23-133F6 from 8, complete sequence Length = 214318 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 189299 tcatataaacaaacaaacaa 189280
>emb|AL672293.14| Mouse DNA sequence from clone RP23-180D16 on chromosome X, complete sequence Length = 177087 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 80812 tcatataaacaaacaaacaa 80831
>emb|AL845174.4| Mouse DNA sequence from clone RP23-156P22 on chromosome 2, complete sequence Length = 216475 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 catataaacaaacaaacaac 106 |||||||||||||||||||| Sbjct: 134486 catataaacaaacaaacaac 134505
>emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chromosome 4, complete sequence Length = 165700 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 98463 tcatataaacaaacaaacaa 98482
>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02, complete sequence Length = 90509 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 atatcatataaacaaacaaa 102 |||||||||||||||||||| Sbjct: 436 atatcatataaacaaacaaa 417
>emb|AL807250.9| Mouse DNA sequence from clone RP23-99K18 on chromosome X, complete sequence Length = 141025 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tcatataaacaaacaaacaa 105 |||||||||||||||||||| Sbjct: 47114 tcatataaacaaacaaacaa 47133 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,698,229 Number of Sequences: 3902068 Number of extensions: 5698229 Number of successful extensions: 708901 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 707435 Number of HSP's gapped (non-prelim): 1465 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)