ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26b09 |
|---|---|
| Clone Library Name | barley_pub |
>EBP2_ARATH (Q9LUJ5) Probable rRNA-processing protein EBP2 homolog| Length = 293 Score = 31.2 bits (69), Expect = 0.62 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = -3 Query: 371 PTCTTGVHAGGQGHPSDHQGARHKQWEVVPWQDGGQGPAERQKIVGTTKDHK 216 P + G +GG+G P+ G + +++ + GG+ +Q TT D K Sbjct: 226 PGVSPGDRSGGKGRPTSRMGNKKREFRDSKFGHGGRKGLSKQNTAETTNDFK 277
>UBP2L_HUMAN (Q14157) Ubiquitin-associated protein 2-like| Length = 983 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = -3 Query: 338 QGHPSDHQGARHKQWEVVPWQDGGQGPAERQKIVGTTKDHKERSVIAGRDHDHEKKRG 165 +G+P H WE+V + G G QK G T+ ++E RD D+ ++RG Sbjct: 88 EGNPDTHS------WEMVGKKKGVSG----QKDGGQTESNEEGKENRDRDRDYSRRRG 135
>KE4_PIG (Q29175) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) (Fragments) Length = 155 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Frame = -3 Query: 344 GGQGHPSDHQGARHKQWEVVPWQDG-----GQGPAERQKIVGTTKDHKERSV-----IAG 195 GG GH H A + EV+ W+ G Q E +K G ++ + S Sbjct: 47 GGHGHSHGHGHAHGTRMEVMAWKTGVSSKEKQSSEEEEKEAGASRKRRGGSTRPKDGPVR 106 Query: 194 RDHDHEKKRGRYRINKAVYL 135 H E+K+G+ + + + L Sbjct: 107 PQHSGEEKQGQTCVCQGIIL 126
>TSP3_MOUSE (Q05895) Thrombospondin-3 precursor| Length = 956 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +1 Query: 259 GPCPPSCQGTTSHC 300 GPCPP QG +HC Sbjct: 301 GPCPPGLQGNGTHC 314
>TSP3_HUMAN (P49746) Thrombospondin-3 precursor| Length = 956 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +1 Query: 259 GPCPPSCQGTTSHC 300 GPCPP QG +HC Sbjct: 301 GPCPPGLQGNGTHC 314
>WRKY8_ARATH (Q9FL26) Probable WRKY transcription factor 8 (WRKY DNA-binding| protein 8) Length = 326 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = -3 Query: 332 HPSDHQGARHKQWEVVPWQDGGQGPAERQKIVGTTKDHKER-----SVIAGRDHDHEKKR 168 HP + G K+ EV +DGG+ QK+V T K +++ S + + DH + Sbjct: 129 HPGEDSGKIRKKREV---RDGGEDDQRSQKVVKTKKKEEKKKEPRVSFMTKTEVDHLEDG 185 Query: 167 GRYR 156 R+R Sbjct: 186 YRWR 189
>THIE_CHLCV (Q824E9) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 212 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +3 Query: 240 DFLAFGWALSTVLPGNDLPLLVTSSLMV 323 + L+FG AL ++L D+PL+V+ S+ V Sbjct: 48 ELLSFGGALKSILDPLDIPLIVSDSVSV 75
>MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48)| Length = 489 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -1 Query: 370 LHVPLESMLEDKDIQATIKELVTSSGRSFPGKTVDKAQPN 251 +H+P E + + ++ +T K ++S RSFP T + PN Sbjct: 385 VHMPEEDDIGNNEVSSTTKSYSSASFRSFPMVTNLSSSPN 424
>NTRK2_HUMAN (Q16620) BDNF/NT-3 growth factors receptor precursor (EC 2.7.10.1)| (Neurotrophic tyrosine kinase receptor type 2) (TrkB tyrosine kinase) (GP145-TrkB) (Trk-B) Length = 822 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 196 PAMTDRSLWSFVVPTI-FWRSAGPCPPSCQGTTS 294 PAM LW F + FWR+A CP SC+ + S Sbjct: 10 PAMA--RLWGFCWLVVGFWRAAFACPTSCKCSAS 41
>TFP11_MOUSE (Q9ERA6) Tuftelin-interacting protein 11 (Tuftelin-interacting| protein 39) Length = 838 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/60 (26%), Positives = 26/60 (43%) Frame = -3 Query: 353 VHAGGQGHPSDHQGARHKQWEVVPWQDGGQGPAERQKIVGTTKDHKERSVIAGRDHDHEK 174 ++ G+GH D + +E+ W + RQ+ TK+ V A RD D E+ Sbjct: 6 LYRDGEGHLDDDDDDERENFEITDWDLQNEFNPNRQR-HWQTKEEATYGVWAERDSDEER 64
>LSHB_RAT (P01230) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +1 Query: 217 LWSFVVPTIFWRSAGPCPPSCQ 282 LW + P++ W S GP P C+ Sbjct: 9 LWLLLSPSVVWASRGPLRPLCR 30
>LSHB_MOUSE (O09108) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) Length = 141 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +1 Query: 217 LWSFVVPTIFWRSAGPCPPSCQ 282 LW + P++ W S GP P C+ Sbjct: 9 LWLLLSPSVVWASRGPLRPLCR 30
>HEM1_CHICK (P07997) 5-aminolevulinate synthase, nonspecific, mitochondrial| precursor (EC 2.3.1.37) (5-aminolevulinic acid synthase) (Delta-aminolevulinate synthase) (Delta-ALA synthetase) (ALAS-H) Length = 635 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -1 Query: 325 ATIKELVTSSGRSFPGKTVDKAQPNAKKS*EQQRTTKNGQSSPGG 191 A + L TS+ R + AQP AKK+ E + +G P G Sbjct: 43 AAARGLATSASRGQQVEETPAAQPEAKKAKEVAQQNTDGSQPPAG 87
>VG45_HAEIN (P44238) Mu-like prophage FluMu protein gp45| Length = 182 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -3 Query: 239 VGTTKDHKERSVIAGRDHDHEKKRGR 162 + T DH+ S I+G++HDHE++ G+ Sbjct: 155 ISTATDHQS-SGISGKNHDHEERVGK 179
>LSHB_PHOSU (Q9QYA9) Lutropin beta chain precursor (Luteinizing hormone beta| subunit) (LSH-beta) (LSH-B) (LH-B) (Fragment) Length = 128 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +1 Query: 217 LWSFVVPTIFWRSAGPCPPSCQ 282 LW + P++ W S GP P C+ Sbjct: 9 LWLLLSPSVVWASRGPLRPLCR 30
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 265 CPPSCQGTTSHCL*RAP*WSLGCPCPP 345 CP C+G TS C + S GC CPP Sbjct: 2216 CPRLCEGNTSSCGDQP---SEGCFCPP 2239
>MTHR1_ARATH (Q9SE60) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| (AtMTHFR1) Length = 592 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -1 Query: 364 VPLESMLEDKDIQATIKELVTSSGRSFPGKTVDKAQPNAKKS*EQ 230 VPL+S+ +D+Q KEL + +S P +D QP K EQ Sbjct: 386 VPLKSI---EDVQEKFKELCIGNLKSSPWSELDGLQPETKIINEQ 427
>PNTB_HAEIN (P43010) NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)| (Pyridine nucleotide transhydrogenase subunit beta) (Nicotinamide nucleotide transhydrogenase subunit beta) Length = 474 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +3 Query: 216 FVVLCCSYDFLAFGWALSTVLPGNDLPLLVT 308 F VL + LAFGW L + G D+P++V+ Sbjct: 202 FPVLLMTAIALAFGWHLVASIGGADMPVVVS 232
>DP2L_ARCFU (O28552) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| Length = 1143 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = -3 Query: 323 DHQGARHKQWEVVPWQDGGQGPAERQKIVGTTKDHKERSVIAGRD-HDHEKKRGRYRI 153 D G +W + GG +E +K V KD ++AGR H ++G +R+ Sbjct: 278 DEVGIEGWEWLDALIKGGGDSGSEEEKAVIKPKDKYLSDIVAGRPVLSHPSRKGGFRL 335 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,025,701 Number of Sequences: 219361 Number of extensions: 1147716 Number of successful extensions: 3335 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3248 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3333 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
