>dbj|AK067082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096E12, full
            insert sequence
          Length = 3335

 Score =  107 bits (54), Expect = 3e-20
 Identities = 105/122 (86%)
 Strand = Plus / Minus

                                                                        
Query: 279  ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttggatgtccttg 338
            ||||| || ||||||||||| |||||||| || ||||||||||| |||||||||||||| 
Sbjct: 3022 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctta 2963

                                                                        
Query: 339  tcctccagcatggactccagtggtacatgtaggcggaatctccagtaatgcttcgggtta 398
            || |||| ||  || |||| ||  |||||||| ||||||||||| |||||||||||||||
Sbjct: 2962 tcgtccaacagcgaatccaatgtcacatgtagccggaatctccaataatgcttcgggtta 2903

              
Query: 399  gt 400
            ||
Sbjct: 2902 gt 2901

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 279      ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttggatgtcctt 337
                ||||| || ||||||||||| |||||||| || ||||||||||| ||||||||||||||
Sbjct: 27914125 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctt 27914067



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 372      cggaatctccagtaatgcttcgggttagt 400
                ||||||||||| |||||||||||||||||
Sbjct: 27913498 cggaatctccaataatgcttcgggttagt 27913470

>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E03
          Length = 159980

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 279   ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttggatgtcctt 337
             ||||| || ||||||||||| |||||||| || ||||||||||| ||||||||||||||
Sbjct: 77483 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctt 77425



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 372   cggaatctccagtaatgcttcgggttagt 400
             ||||||||||| |||||||||||||||||
Sbjct: 76856 cggaatctccaataatgcttcgggttagt 76828

>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1343_D04
          Length = 143407

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 279  ccagggaacgacctcccactgcttgtgacgagctccttgatggtcgcttggatgtcctt 337
            ||||| || ||||||||||| |||||||| || ||||||||||| ||||||||||||||
Sbjct: 3459 ccaggaaatgacctcccactacttgtgacaagttccttgatggttgcttggatgtcctt 3401



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 372  cggaatctccagtaatgcttcgggttagt 400
            ||||||||||| |||||||||||||||||
Sbjct: 2832 cggaatctccaataatgcttcgggttagt 2804

>gb|AC025794.9| Mus musculus chromosome 19, clone RP23-62O7, complete sequence
          Length = 242418

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 212    gttctttgtggtcctttgttgttcct 237
              ||||||||||| ||||||||||||||
Sbjct: 105785 gttctttgtggacctttgttgttcct 105810

>gb|AY253318.1| HIV-1 isolate 01TZA306 from Tanzania gag protein (gag) and pol
            protein (pol) genes, partial cds; and vif protein (vif),
            vpr protein (vpr), tat protein (tat), rev protein (rev),
            vpu protein (vpu), envelope glycoprotein (env), and nef
            protein (nef) genes, complete cds
          Length = 8737

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   tttctctagctgaaacaaca 113
            ||||||||||||||||||||
Sbjct: 3127 tttctctagctgaaacaaca 3146

>gb|AC130891.4| Homo sapiens 12 BAC RP11-97F22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 32143

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ccagtagttattattctcca 54
             ||||||||||||||||||||
Sbjct: 19111 ccagtagttattattctcca 19130

>gb|AC140121.4| Homo sapiens 12 BAC RP13-86N24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 39373

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    ccagtagttattattctcca 54
             ||||||||||||||||||||
Sbjct: 19842 ccagtagttattattctcca 19823

>gb|AY463223.1| HIV-1 isolate C.ZA.J54Ma from South Africa, complete genome
          Length = 9117

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 86   aaagattttttctctagctgaaacaaca 113
            ||||||| |||||||| |||||||||||
Sbjct: 3366 aaagattgtttctctaactgaaacaaca 3393

>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    tcctccagcatggactccag 358
              ||||||||||||||||||||
Sbjct: 679534 tcctccagcatggactccag 679553

>gb|DQ011177.1| HIV-1 isolate 04ZASK136B1 from South Africa, complete genome
          Length = 9042

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   tttctctagctgaaacaaca 113
            ||||||||||||||||||||
Sbjct: 3367 tttctctagctgaaacaaca 3386

>gb|DQ011166.1| HIV-1 isolate 04ZASK135B1 from South Africa, complete genome
          Length = 9073

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   tttctctagctgaaacaaca 113
            ||||||||||||||||||||
Sbjct: 3340 tttctctagctgaaacaaca 3359

>emb|AL773508.6| Mouse DNA sequence from clone RP23-253D15 on chromosome 2, complete
             sequence
          Length = 132091

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   tatctccctctcttcttctc 179
             ||||||||||||||||||||
Sbjct: 44695 tatctccctctcttcttctc 44676

>gb|AY713414.1| HIV-1 isolate 94IN_20635-4 from India gag protein (gag) and pol
            protein (pol) genes, partial cds; and vif protein (vif),
            vpr protein (vpr), tat protein (tat), rev protein (rev),
            vpu protein (vpu), envelope glycoprotein (env), and nef
            protein (nef) genes, complete cds
          Length = 8745

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 86   aaagattttttctctagctgaaacaaca 113
            ||||||| |||||||| |||||||||||
Sbjct: 3119 aaagattgtttctctaactgaaacaaca 3146

>gb|AC079436.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-108L19,
             complete sequence
          Length = 174622

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   atatctccctctcttcttct 178
             ||||||||||||||||||||
Sbjct: 72144 atatctccctctcttcttct 72163

>gb|DQ351226.1| HIV-1 isolate 03ZAPS025MB1 from South Africa, complete genome
          Length = 9081

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 86   aaagattttttctctagctgaaacaaca 113
            ||||||| |||||||| |||||||||||
Sbjct: 3352 aaagattgtttctctaactgaaacaaca 3379

>gb|AY108559.1| Zea mays PCO061836 mRNA sequence
          Length = 710

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 372 cggaatctccagtaatgcttcgggttagtggg 403
           ||||||||||| || ||||| |||||||||||
Sbjct: 694 cggaatctccaatagtgctttgggttagtggg 663


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,431,444
Number of Sequences: 3902068
Number of extensions: 3431444
Number of successful extensions: 59565
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59520
Number of HSP's gapped (non-prelim): 45
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)