ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26b08 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 71.6 bits (174), Expect = 4e-13 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 LKNR GPAKFPYM LYPNTSDH G A GL A+GIPNSISI Sbjct: 823 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 67.4 bits (163), Expect = 8e-12 Identities = 31/40 (77%), Positives = 34/40 (85%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 LKNR GPA+FPYM LYPNTSD TG A G+ A+GIPNSISI Sbjct: 827 LKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 65.1 bits (157), Expect = 4e-11 Identities = 29/40 (72%), Positives = 33/40 (82%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 LKNR GPA FPY ++PNTSD+ G AEG+ ARGIPNSISI Sbjct: 824 LKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 61.6 bits (148), Expect = 4e-10 Identities = 29/39 (74%), Positives = 29/39 (74%) Frame = -3 Query: 378 KNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 KNR GP FPY LYPNTSD G A GL ARGIPNSISI Sbjct: 832 KNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 57.8 bits (138), Expect = 6e-09 Identities = 29/41 (70%), Positives = 31/41 (75%), Gaps = 1/41 (2%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQ-AEGLPARGIPNSISI 262 LKNR GP K PYM LYPNTSD T + +GL A GIPNSISI Sbjct: 837 LKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 46.2 bits (108), Expect = 2e-05 Identities = 24/40 (60%), Positives = 27/40 (67%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L+NR GPAK PY LYP++ EGL RGIPNSISI Sbjct: 820 LRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/40 (57%), Positives = 26/40 (65%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L+NR GP K PY LYP++ EGL RGIPNSISI Sbjct: 833 LRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 43.9 bits (102), Expect = 9e-05 Identities = 23/40 (57%), Positives = 24/40 (60%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L+NR GP K PY L P D EGL RGIPNSISI Sbjct: 828 LRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/40 (55%), Positives = 25/40 (62%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L NR GP + PY L+PN +EGL RGIPNSISI Sbjct: 833 LSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSISI 865
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/40 (55%), Positives = 26/40 (65%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L+NR GP + PY LYP++ EGL RGIPNSISI Sbjct: 828 LRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 41.2 bits (95), Expect = 6e-04 Identities = 21/38 (55%), Positives = 24/38 (63%) Frame = -3 Query: 375 NRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 NR GP + PY LYP++ EGL RGIPNSISI Sbjct: 808 NRLGPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 40.8 bits (94), Expect = 8e-04 Identities = 21/40 (52%), Positives = 24/40 (60%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L+NRTGP + PY L H EGL +GIPNSISI Sbjct: 831 LRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/39 (48%), Positives = 24/39 (61%) Frame = -3 Query: 378 KNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 KNR+GP PY L+P + EGL +GIPNS+SI Sbjct: 827 KNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 40.4 bits (93), Expect = 0.001 Identities = 21/40 (52%), Positives = 25/40 (62%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L+NR GP + PY L P++ EGL RGIPNSISI Sbjct: 824 LRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 40.0 bits (92), Expect = 0.001 Identities = 20/40 (50%), Positives = 25/40 (62%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 LKNRTG K PY L+P++ G+ RGIPNS+SI Sbjct: 826 LKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 38.5 bits (88), Expect = 0.004 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L NRTGP PY L+P + GL +GIPNS+SI Sbjct: 827 LTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 38.5 bits (88), Expect = 0.004 Identities = 20/40 (50%), Positives = 25/40 (62%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L +R GP + PY L+P++ EGL RGIPNSISI Sbjct: 831 LYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 37.7 bits (86), Expect = 0.007 Identities = 19/34 (55%), Positives = 22/34 (64%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGI 280 L+NRTGPAK PY LYP++ EGL RGI Sbjct: 714 LRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 37.0 bits (84), Expect = 0.012 Identities = 18/40 (45%), Positives = 23/40 (57%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 L NR+GP PY L+P + GL +GIPNS+SI Sbjct: 828 LTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 31.6 bits (70), Expect = 0.48 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = -3 Query: 378 KNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 KNR G PY L P++ G+ RG+PNSISI Sbjct: 886 KNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Frame = -3 Query: 378 KNRTGPAKFPYMXLYPNTSDHTG----QAEGLPARGIPNSISI 262 KNR G PY+ L P+ D T + + GIPNSISI Sbjct: 894 KNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/39 (46%), Positives = 20/39 (51%) Frame = -3 Query: 378 KNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 KNR G PY L P + G+ RGIPNSISI Sbjct: 864 KNRCGAGIVPYELLKPFSEP------GVTGRGIPNSISI 896
>CHK1_HUMAN (O14757) Serine/threonine-protein kinase Chk1 (EC 2.7.11.1)| Length = 476 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -2 Query: 124 PDGFDRHAEAQLSWLPVNASSCAEKI 47 P GF +H ++ L + PVN++S E + Sbjct: 287 PSGFSKHIQSNLDFSPVNSASSEENV 312
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -3 Query: 378 KNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 +NR G PY + P++ G+ RG+PNS++I Sbjct: 867 RNRCGAGVLPYELMAPSSGP------GITCRGVPNSVTI 899
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%) Frame = -2 Query: 373 PHRAGQVPIHXALPKHLRPHGTGRG---APRQGHPEQHIHL 260 PHR +P H P+H PH P HP H H+ Sbjct: 385 PHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQHPPPHQHI 425
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 LKNR G PY + P + G+ GIPNS SI Sbjct: 891 LKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>FBLN3_MACFA (Q7YQD7) EGF-containing fibulin-like extracellular matrix protein 1| precursor (Fibulin-3) (FIBL-3) Length = 493 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 216 PCLLTPEQACVCVCDKKLCR 157 P +LTPE CVC +CR Sbjct: 368 PYILTPENRCVCPVSNAMCR 387
>FBLN3_HUMAN (Q12805) EGF-containing fibulin-like extracellular matrix protein 1| precursor (Fibulin-3) (FIBL-3) (Fibrillin-like protein) (Extracellular protein S1-5) Length = 493 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 216 PCLLTPEQACVCVCDKKLCR 157 P +LTPE CVC +CR Sbjct: 368 PYILTPENRCVCPVSNAMCR 387
>MDCG_PSEPU (Q9Z448) Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)| (Holo-ACP synthase) Length = 204 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +2 Query: 266 DMLFGMPLAGSPSACPVWS 322 D+L+GMP++G P+ P W+ Sbjct: 8 DLLWGMPVSGLPTDAPQWA 26
>IF2_ANASP (Q8YQJ1) Translation initiation factor IF-2| Length = 1039 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/61 (36%), Positives = 26/61 (42%) Frame = -2 Query: 376 EPHRAGQVPIHXALPKHLRPHGTGRGAPRQGHPEQHIHLI*ARPSSRPHAFVLSLLAYTG 197 EP Q P A+ K P + + PR G PE+ P SRP A L L TG Sbjct: 166 EPEAQSQAPAKIAVEK---PEKSAQ--PRPGKPERQPKPQLVAPPSRPTAEKLDLSEITG 220 Query: 196 A 194 A Sbjct: 221 A 221
>PROB_MYCTU (P71910) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 376 Score = 27.7 bits (60), Expect = 7.0 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 4/96 (4%) Frame = +1 Query: 100 PHADQTRRARTLIALI----IHAPAQLFVTHTHTSLLRCKQARIAQKHEVSTTDVLKSNG 267 PH D R AR L+ + + P+ +F L + R+ +V V+ S+G Sbjct: 4 PHRDAIRTARGLVVKVGTTALTTPSGMFDAGRLAGLAEAVERRMKAGSDV----VIVSSG 59 Query: 268 YAVRDAPGGEPLGLSRXXXXXXXXXXXXXLGRPGAV 375 A G EPLGLSR +G+ V Sbjct: 60 AI---AAGIEPLGLSRRPKDLATKQAAASVGQVALV 92
>PROB_MYCBO (P59958) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 376 Score = 27.7 bits (60), Expect = 7.0 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 4/96 (4%) Frame = +1 Query: 100 PHADQTRRARTLIALI----IHAPAQLFVTHTHTSLLRCKQARIAQKHEVSTTDVLKSNG 267 PH D R AR L+ + + P+ +F L + R+ +V V+ S+G Sbjct: 4 PHRDAIRTARGLVVKVGTTALTTPSGMFDAGRLAGLAEAVERRMKAGSDV----VIVSSG 59 Query: 268 YAVRDAPGGEPLGLSRXXXXXXXXXXXXXLGRPGAV 375 A G EPLGLSR +G+ V Sbjct: 60 AI---AAGIEPLGLSRRPKDLATKQAAASVGQVALV 92
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -3 Query: 381 LKNRTGPAKFPYMXLYPNTSDHTGQAEGLPARGIPNSISI 262 LKNR G PY + P + G+ GIPNS SI Sbjct: 908 LKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>PROB_MYCPA (Q73XP6) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 367 Score = 27.3 bits (59), Expect = 9.1 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Frame = +1 Query: 103 HADQTRRARTLIALI----IHAPAQLFVTHTHTSLLRCKQARIAQKHEVSTTDVLKSNGY 270 H D R AR+++ + + PA +F L +AR+ + TDV+ + Sbjct: 4 HRDAIRTARSMVVKVGTNALTTPAGVFDAGRLAGLADAIEARMK-----AGTDVVIVSSG 58 Query: 271 AVRDAPGGEPLGLSRXXXXXXXXXXXXXLGRPGAV 375 A+ A G EPLGLSR +G+ V Sbjct: 59 AI--AAGIEPLGLSRRPRDLATKQAAASVGQVALV 91
>RIPK5_BOVIN (Q4TVR5) Receptor-interacting serine/threonine-protein kinase 5 (EC| 2.7.11.1) (Dusty protein kinase) (Dusty PK) Length = 928 Score = 27.3 bits (59), Expect = 9.1 Identities = 26/92 (28%), Positives = 37/92 (40%) Frame = -3 Query: 306 AEGLPARGIPNSISI*FEHVRRRDLMLLCYPCLLTPEQACVCVCDKKLCRCMNN*GNKGA 127 A GLPA G + IS + +R M+ C PC+L Q C C+ +N Sbjct: 83 ATGLPA-GQLSCISFPPKEEKRLQQMVDCLPCILILGQDC-----SVKCQLLNLLLGVQV 136 Query: 126 CPTGLIGMRKLSSAGYRSMHRRVQKKSLVLPN 31 PT +G R + + SL LP+ Sbjct: 137 LPTNKLGGENCKLRRLRFTYGTQTRVSLALPD 168
>ITR1_ASCSU (P19398) Trypsin inhibitor (ATI)| Length = 62 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +3 Query: 261 KWICCSGCPWRGAPRPVPCGRRC 329 +W C GC A + VPC R C Sbjct: 11 QWTKCGGCEGTCAQKIVPCTREC 33
>SEM5B_MOUSE (Q60519) Semaphorin-5B precursor (Semaphorin G) (Sema G)| Length = 1093 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 11/41 (26%) Frame = +2 Query: 233 RSRRRTCSNQMDMLFGMPLAG--------SPSACPV---WS 322 R R+RTC+N G+P G +P ACPV WS Sbjct: 816 RVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWS 856
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 11/41 (26%) Frame = +2 Query: 233 RSRRRTCSNQMDMLFGMPLAG--------SPSACPV---WS 322 R R+RTC+N G+P G +P ACPV WS Sbjct: 816 RVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWS 856
>STC_DROME (P40798) Protein shuttle craft| Length = 1106 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -3 Query: 222 CYPCLLTPEQACVCVCDK 169 C PC L+PEQ C C K Sbjct: 599 CRPCKLSPEQITSCPCGK 616
>SEZ6L_HUMAN (Q9BYH1) Seizure 6-like protein precursor| Length = 1024 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 337 LPKHLRPHGTG-RGAPRQGHPEQHIHLI*ARPSSRPHAFVLSLLAYTGAS 191 L +L P G RG+P + HPE+ + + A PSS A VL L G + Sbjct: 42 LGPYLLPSGAPERGSPGKEHPEERV--VTAPPSSSQSAEVLGELVLDGTA 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,318,319 Number of Sequences: 219361 Number of extensions: 1232187 Number of successful extensions: 3338 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 3226 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3321 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
