ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 323 2e-85
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 176 3e-41
3gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence 88 2e-14
4gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 ge... 88 2e-14
5gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 ge... 88 2e-14
6gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 ge... 88 2e-14
7gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 ge... 88 2e-14
8gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 ge... 88 2e-14
9gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 ge... 88 2e-14
10gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 ge... 88 2e-14
11gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 ge... 88 2e-14
12gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 ge... 88 2e-14
13gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 ge... 88 2e-14
14gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 ge... 88 2e-14
15gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 ge... 88 2e-14
16gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 ge... 88 2e-14
17gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 geno... 88 2e-14
18gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 86 1e-13
19gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRN... 84 4e-13
20gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 84 4e-13
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 2e-11
22emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 78 2e-11
23gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 78 2e-11
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
25dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
26ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 76 9e-11
27gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complet... 72 1e-09
28ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA 66 9e-08
29gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 66 9e-08
30gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 66 9e-08
31gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.083
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.083
33ref|XM_863665.1| PREDICTED: Canis familiaris hypothetical protei... 44 0.33
34emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 1.3
35emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2... 42 1.3
36emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 1.3
37ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.1 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  323 bits (163), Expect = 2e-85
 Identities = 186/194 (95%)
 Strand = Plus / Minus

                                                                        
Query: 190  agcttgctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 249
            |||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                                        
Query: 250  gtgctcaaatcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctg 309
            ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608

                                                                        
Query: 310  tcccgtgtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggt 369
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2607 tcccgtgtggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggt 2548

                          
Query: 370  gcggttcttgagct 383
            ||||||||| ||||
Sbjct: 2547 gcggttctttagct 2534



 Score =  242 bits (122), Expect = 7e-61
 Identities = 141/147 (95%), Gaps = 4/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 25   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 85   agctgagctgagcttccgcatgccgatcaaacccgtcgggcacgcaccc----ttattgc 140
            ||||||||||||||||||||||||||||| |||||||| ||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                       
Query: 141  cttaattattcatgcaccggcacaact 167
            |||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaact 2750
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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score =  176 bits (89), Expect = 3e-41
 Identities = 112/120 (93%)
 Strand = Plus / Minus

                                                                       
Query: 263 atggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgtggtcg 322
           ||||| |||||||| |||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 902 atggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtggtcg 843

                                                                       
Query: 323 gaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttcttgagc 382
           |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 842 gaggtgttggggtagagcagcatgtaggggaacttggccggcccggtgcggttcttgagc 783



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 18   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 67
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050
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>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence
          Length = 810

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 736 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 677

              
Query: 379 gag 381
           |||
Sbjct: 676 gag 674
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>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence
          Length = 805

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                       
Query: 319 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
           |||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcggttctt 672

              
Query: 379 gag 381
           |||
Sbjct: 671 gag 669
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>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 96/114 (84%)
 Strand = Plus / Minus

                                                                       
Query: 263 atggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgtggtcg 322
           ||||| |||||||| ||||||||| | |||| ||||||  ||||    ||| |||| |||
Sbjct: 749 atggagatgctgttggggatgcccttagcggtgagcccggcggcggcgcccttgtgatcg 690

                                                                 
Query: 323 gaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttc 376
           |||||||| |||||||||| |||||| |||||||||||||| ||| ||||||||
Sbjct: 689 gaggtgttggggtagagcaacatgtaggggaacttggccggaccgttgcggttc 636
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>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds
          Length = 1331

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 315  tgtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggt 374
            |||||||||||||||| |||||||||| |||||| || ||||| ||||| ||| ||||||
Sbjct: 1030 tgtggtcggaggtgttggggtagagcagcatgtagggaaacttagccgggccgttgcggt 971

                     
Query: 375  tcttgagct 383
            |||||||||
Sbjct: 970  tcttgagct 962
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>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                        
Query: 315  tgtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggt 374
            |||||||||||||||| |||||||||| |||||| || ||||| ||||| ||| ||||||
Sbjct: 2601 tgtggtcggaggtgttggggtagagcagcatgtagggaaacttagccgggccgttgcggt 2542

                     
Query: 375  tcttgagct 383
            |||||||||
Sbjct: 2541 tcttgagct 2533
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                            
Query: 258      atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 317
                |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 30026450 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 30026391

                                                                  
Query: 318      ggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 367
                |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 30026390 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 30026341



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 319      gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
                |||||||||||| ||||| |||| |||||||||||||| ||| || ||  ||||||||||
Sbjct: 27803047 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 27802988

                    
Query: 379      gagc 382
                ||||
Sbjct: 27802987 gagc 27802984
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                        
Query: 258  atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 317
            |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 2696 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 2637

                                                              
Query: 318  ggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 367
            |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 2636 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 2587
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                         
Query: 258   atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 317
             |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 81301 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 81360

                                                               
Query: 318   ggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 367
             |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 81361 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 81410
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                            
Query: 258      atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 317
                |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 30117872 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 30117813

                                                                  
Query: 318      ggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 367
                |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 30117812 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 30117763



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                            
Query: 319      gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
                |||||||||||| ||||| |||| |||||||||||||| ||| || ||  ||||||||||
Sbjct: 27894371 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 27894312

                    
Query: 379      gagc 382
                ||||
Sbjct: 27894311 gagc 27894308
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 92/110 (83%)
 Strand = Plus / Minus

                                                                        
Query: 258  atcaaatggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgt 317
            |||| ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || 
Sbjct: 2729 atcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttga 2670

                                                              
Query: 318  ggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 367
            |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 2669 ggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 2620
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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 88/105 (83%)
 Strand = Plus / Minus

                                                                        
Query: 263  atggatatgctgttcgggatgcccctggcggggagcccctcggcctgtcccgtgtggtcg 322
            ||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || |||||
Sbjct: 2609 atggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgaggtcg 2550

                                                         
Query: 323  gaggtgtttgggtagagcancatgtatgggaacttggccggcccg 367
            ||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 2549 gaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 2505
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>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds
          Length = 2845

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                        
Query: 319  gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
            |||||||||||| |||||||||| | |||| ||||||| |||||| ||| ||||||||||
Sbjct: 2562 gtcggaggtgttggggtagagcagcgtgtaggggaactcggccgggccgttgcggttctt 2503

               
Query: 379  gag 381
            |||
Sbjct: 2502 gag 2500
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>ref|XM_469409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2601

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                        
Query: 319  gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
            |||||||||||| ||||| |||| |||||||||||||| ||| || ||  ||||||||||
Sbjct: 2541 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 2482

                
Query: 379  gagc 382
            ||||
Sbjct: 2481 gagc 2478
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 319   gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
             |||||||||||| ||||| |||| |||||||||||||| ||| || ||  ||||||||||
Sbjct: 47177 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 47118

                 
Query: 379   gagc 382
             ||||
Sbjct: 47117 gagc 47114
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                         
Query: 319   gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcggttctt 378
             |||||||||||| ||||| |||| |||||||||||||| ||| || ||  ||||||||||
Sbjct: 10846 gtcggaggtgttggggtaaagcagcatgtatgggaactcggctgggccattgcggttctt 10905

                 
Query: 379   gagc 382
             ||||
Sbjct: 10906 gagc 10909
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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 132    ccttattgccttaattattcatg 154
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 132   ccttattgccttaattattcatg 154
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 132      ccttattgccttaattattcatg 154
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.083
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 132      ccttattgccttaattattcatg 154
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
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>ref|XM_863665.1| PREDICTED: Canis familiaris hypothetical protein LOC612566
           (LOC612566), mRNA
          Length = 1026

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 277 cgggatgcccctggcggggagcccct 302
           |||||||| |||||||||||||||||
Sbjct: 74  cgggatgcacctggcggggagcccct 99
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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    aaacaagggattttttctgca 59
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
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>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene)
          Length = 2967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 257  aatcaaatggatatgctgttcgggatgcc 285
            ||||||||||| |||||||| ||||||||
Sbjct: 2776 aatcaaatggagatgctgttggggatgcc 2748
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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    gcaaaacaagggattttttct 56
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    ggagggaacatcacaccatc 21
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,304,999
Number of Sequences: 3902068
Number of extensions: 2304999
Number of successful extensions: 45105
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44981
Number of HSP's gapped (non-prelim): 123
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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