ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26a12 |
|---|---|
| Clone Library Name | barley_pub |
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 43.5 bits (101), Expect = 3e-04 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = -1 Query: 456 LNKAALVTLLNIKCMNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEWKFR 277 LN A++TL N+ +++KT + +F +F+ K + + +IS++ G W F+ Sbjct: 542 LNVPAIITLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTWTFK 601 Query: 276 VKHFSSYGF-GEAEADHLADSL 214 V HFS +G E +A+ D L Sbjct: 602 VNHFSIWGLVNEEDAEIDEDDL 623
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 37.7 bits (86), Expect = 0.014 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Frame = -1 Query: 456 LNKAALVTLLNIKCMNRKTDEQYT--QGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEWK 283 LN A++TL ++R+T E Q PR+ + + L + + EFI F+ G+W Sbjct: 874 LNVPAIITLEKTWPLSRETREPIKDPQNPRYIQHVKRLHRIKD---TEFIDFND--GKWI 928 Query: 282 FRVKHFSSYGFGEAEAD 232 F+V+HFS YG + E + Sbjct: 929 FKVQHFSRYGLLDDEEE 945
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 34.3 bits (77), Expect = 0.15 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 339 AEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 232 + +QG +F + G W F+V HFS YG +++ + Sbjct: 855 SRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 890
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 34.3 bits (77), Expect = 0.15 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 339 AEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 232 + +QG +F + G W F+V HFS YG +++ + Sbjct: 856 SRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 891
>Y368_LISMO (Q8Y9Z9) Putative Nudix hydrolase lmo0368 (EC 3.6.-.-)| Length = 169 Score = 30.4 bits (67), Expect = 2.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 72 EFLPMFFCTYLFSLKNAQKLH 10 EF+P FF LF+LKNA +H Sbjct: 148 EFIPYFFLNQLFNLKNATTIH 168
>UXAC_CLOPE (Q8XP14) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)| (Uronic isomerase) Length = 466 Score = 30.0 bits (66), Expect = 2.9 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -1 Query: 429 LNIKC-MNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEWKFRVKHFSSYG 253 +N KC +N + + + FKE + K AE VE SFD K + R+ +F Y Sbjct: 173 INFKCSVNPSFRPEKAMKIQNEGFKEYIGKLAEVSNVEIKSFDDLKKALEIRLDYF--YE 230 Query: 252 FGEAEADHLADSL*LYR 202 G DH + + Y+ Sbjct: 231 NGCMITDHSLERVVFYK 247
>UBP14_YEAST (P38237) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (Glucose-induced degradation protein 6) Length = 803 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +2 Query: 275 TLNFHSPLAPSNEINSTPCSSAFFTSISLNLSNLGPCVYCSSV 403 T NF P P N +N CSS T NL C++C ++ Sbjct: 196 TENFQIPSKPENTVNLNQCSSCDLT------QNLWLCLHCGNI 232
>Y387_LISIN (Q92ES1) Putative Nudix hydrolase lin0387 (EC 3.6.-.-)| Length = 169 Score = 30.0 bits (66), Expect = 2.9 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 72 EFLPMFFCTYLFSLKNAQKLH 10 EF+P FF LF LKNA +H Sbjct: 148 EFIPYFFLNQLFELKNATTIH 168
>CDC25_YEAST (P04821) Cell division control protein 25| Length = 1589 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = +2 Query: 290 SPLAPSNEINSTPCSSAFFTSISLNLSNLGPCVYCSSVFLFMHLMFRRVT 439 SP+ S+ + SSAFF L L ++ P Y + + + H ++ R+T Sbjct: 1276 SPIHMSSSSLPSSASSAFFRLKKLKLLDIDPYTYATQLTVLEHDLYLRIT 1325
>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1198 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = -1 Query: 456 LNKAALVTLLNIKCMNRKTDEQYTQGPR--------FDKFKEMLVKKAEEQGVEFISFDG 301 L K LVT ++ + R+ +E + P+ F F +++ +QG+ ++ FDG Sbjct: 1008 LGKVDLVTSTKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDG 1067 Query: 300 AKGE 289 + Sbjct: 1068 TMSQ 1071
>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)| Length = 41 Score = 28.5 bits (62), Expect = 8.4 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 218 PCSFIDRCCNCCL 180 PCS+ CCNCCL Sbjct: 8 PCSYHADCCNCCL 20
>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17| Length = 46 Score = 28.5 bits (62), Expect = 8.4 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 218 PCSFIDRCCNCCL 180 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)| Length = 46 Score = 28.5 bits (62), Expect = 8.4 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 218 PCSFIDRCCNCCL 180 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,420,433 Number of Sequences: 219361 Number of extensions: 1192182 Number of successful extensions: 3498 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3408 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3497 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
