ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl26a09 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 35.0 bits (79), Expect = 0.11 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 322 + +++EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 851 VGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 35.0 bits (79), Expect = 0.11 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 322 + +++EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 851 VGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 35.0 bits (79), Expect = 0.11 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 322 + +++EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 851 VGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 35.0 bits (79), Expect = 0.11 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 322 + +++EGL +E K K+ + + QE AK RL LW+YGD +D Sbjct: 850 VGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 900
>NUC_STAAU (P00644) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) [Contains: Nuclease B; Nuclease A] Length = 231 Score = 31.2 bits (69), Expect = 1.5 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 325 +N A++ +GLA++ + K T ++L + + +AKKE+L +W + +S Sbjct: 181 VNEALVRQGLAKVA----YVYKPNNTHEQHLRKSEAQAKKEKLNIWSEDNADS 229
>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1018 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = -2 Query: 465 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 322 EE R ER ++W ++RKTA+EN+ + +++ ++ ++ + W D + + Sbjct: 126 EEMRKRKERVEKWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEE 174
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +3 Query: 261 CLLSSTDAAGVSSRLELALPRRIQ 332 C S TD AG +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (EC 2.1.1.-)| Length = 407 Score = 30.0 bits (66), Expect = 3.4 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 7/53 (13%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRW---DTKE----RKTALENLEQFQEKAKKERLRLW 346 I+ A+ EG+ ERGK W D +E KT+ + +E+ +E ++ER+ +W Sbjct: 111 IDLAVTVEGIGFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVW 163
>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (Helicase of 117.4 kDa) Length = 1032 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 465 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 322 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 465 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 322 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 465 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 322 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (PRP5 homolog) Length = 1032 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = -2 Query: 465 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 322 EE R ER ++W ++RK A+EN+ + +++ ++ ++ + W D + D Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206
>Y1078_PYRAB (Q9UZR7) Hypothetical RNA methyltransferase PYRAB10780 (EC 2.1.1.-)| Length = 405 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 7/53 (13%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKE-------RKTALENLEQFQEKAKKERLRLW 346 I+ A+ ++G+ ERGK W + KT+ E +E+ +E ++E++ +W Sbjct: 111 IDLAITKDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVW 163
>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)| (Centromere/microtubule-binding protein CBF5) (Centromere-binding factor 5) (Small nucleolar RNP protein CBF5) (H/ACA snoRNP protein CBF5) (p64') Length = 483 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = -2 Query: 468 LEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 328 ++E ++ E+ ++ D KE+K E ++ ++K KKE+ R + GD E Sbjct: 428 VKEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474
>URED_SYNY3 (P73047) Urease accessory protein ureD| Length = 270 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -1 Query: 286 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 161 A++V+ W A W RY+ GHR ++ L+ K +R + Sbjct: 4 ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45
>NUC_STAAW (Q8NXI6) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 325 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAS (Q6GB41) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 325 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAR (Q6GIK1) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 325 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAN (Q7A6P2) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 325 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAM (Q99VJ0) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 325 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>NUC_STAAC (Q5HHM4) Thermonuclease precursor (EC 3.1.31.1) (TNase)| (Micrococcal nuclease) (Staphylococcal nuclease) Length = 228 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -2 Query: 483 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 325 +N A++ +GLA++ + K T + L + + +AKKE+L +W + +S Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226
>MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-A70-like| protein (EC 2.1.1.62) Length = 608 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -2 Query: 429 WDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 322 WD K KT L + EK KKER+ + D++ D Sbjct: 5 WDIKSLKTKRNTLREKLEKRKKERIEI--LSDIQED 38
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 353 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 261 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +2 Query: 59 VLPLQRRNAVHKGHRP 106 VLP RRN VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643
>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +2 Query: 59 VLPLQRRNAVHKGHRP 106 VLP RRN VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 353 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 261 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-box protein| SMC2) Length = 1170 Score = 28.5 bits (62), Expect = 9.9 Identities = 15/50 (30%), Positives = 29/50 (58%) Frame = -2 Query: 486 SINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYG 337 S+ +L++ L +E + TK+ + +++++Q QE K R RL +YG Sbjct: 421 SMKMELLKKELLTIEPKLKEATKDNELNVKHVKQCQETCDKLRARLVEYG 470
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 353 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 261 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,466,808 Number of Sequences: 219361 Number of extensions: 1044063 Number of successful extensions: 3363 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3255 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3359 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
