ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl26a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK058672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 127 3e-26
4emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial se... 127 3e-26
5gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 121 2e-24
8gb|BT016818.1| Zea mays clone Contig651 mRNA sequence 98 3e-17
9gb|AY107397.1| Zea mays PCO076624 mRNA sequence 98 3e-17
10gb|AY105862.1| Zea mays PCO076623 mRNA sequence 94 4e-16
11gb|BT016644.1| Zea mays clone Contig477 mRNA sequence 90 6e-15
12gb|BT016902.1| Zea mays clone Contig735 mRNA sequence 86 1e-13
13emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chr... 46 0.084
14gb|AC093115.2| Homo sapiens chromosome 3 clone RP11-360G1, compl... 44 0.33
15gb|AC012519.9|AC012519 Homo sapiens 3 BAC RP11-1036F1 (Roswell P... 44 0.33
16gb|AY754728.1| Homo sapiens sarcoglycan epsilon (SGCEP) pseudoge... 42 1.3
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.3
18emb|AL357522.10| Human DNA sequence from clone RP11-685G11 on ch... 42 1.3
19gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genom... 42 1.3
20ref|NG_004723.1| Homo sapiens sarcoglycan, epsilon, pseudogene (... 42 1.3
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
22gb|AC023128.4| Homo sapiens BAC clone RP11-357J9 from 2, complet... 42 1.3
23gb|AF270379.1|AF270379 Staphylococcus epidermidis strain SR1 clo... 42 1.3
24gb|AF270098.1|AF270098 Staphylococcus epidermidis strain SR1 clo... 42 1.3
25gb|AF269737.1|AF269737 Staphylococcus epidermidis strain SR1 clo... 42 1.3
26ref|NM_102680.2| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIK... 40 5.2
27ref|NM_179396.1| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIK... 40 5.2
28gb|AC168120.3| Mus musculus BAC clone RP23-49A14 from chromosome... 40 5.2
29gb|AC123683.6| Mus musculus chromosome 9, clone RP23-296I6, comp... 40 5.2
30gb|AC163624.4| Mus musculus BAC clone RP24-558P12 from chromosom... 40 5.2
31emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in... 40 5.2
32gb|AC110823.5| Mus musculus BAC clone RP24-366C12 from chromosom... 40 5.2
33gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, comple... 40 5.2
34gb|AC016255.24| Homo sapiens 3 BAC RP11-883M5 (Roswell Park Canc... 40 5.2
35gb|AY070368.1| Arabidopsis thaliana putative RNA-binding protein... 40 5.2
36emb|AL672177.9| Mouse DNA sequence from clone RP23-292D8 on chro... 40 5.2
37emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chr... 40 5.2
38dbj|AK134256.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 40 5.2
39gb|AY062613.1| Arabidopsis thaliana RNA-binding protein MEI2, pu... 40 5.2
40dbj|AB179423.1| Macaca fascicularis testis cDNA clone: QtsA-1977... 40 5.2
41gb|AC068667.6|AC068667 Arabidopsis thaliana chromosome 1 BAC F15... 40 5.2
42gb|AC150312.2| Mus musculus BAC clone RP23-336M16 from 7, comple... 40 5.2
43gb|AC148975.3| Mus musculus BAC clone RP23-398E10 from 7, comple... 40 5.2 
>dbj|AK058672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H04, full
            insert sequence
          Length = 2175

 Score =  139 bits (70), Expect = 8e-30
 Identities = 181/218 (83%)
 Strand = Plus / Minus

                                                                        
Query: 164  gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 223
            |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 1731 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 1672

                                                                        
Query: 224  ccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcccttt 283
            |||||||| ||||||||   ||| |  || ||||||||||| ||||| || || ||| ||
Sbjct: 1671 ccaggtgccttgtcctctgtcaaaaatgagcggaagaaatcaccagatggttcacccctt 1612

                                                                        
Query: 284  cggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgacttca 343
            | ||| || | ||  || || ||||| |||||||| || ||||||||||| |  ||||||
Sbjct: 1611 ctgcatagacgcaaccttaaataagaacatctctggcgtcttatttcattaattacttca 1552

                                                  
Query: 344  ttcactttcctggacaatgcattatcaaattgctccaa 381
            || || ||||  |||| | |||| ||||||||||||||
Sbjct: 1551 tttaccttccgtgacagttcattgtcaaattgctccaa 1514
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                            
Query: 160      tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 219
                ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 13860418 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13860477

                                                                
Query: 220      gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctcc 267
                |||||||||||| ||||| || ||||| || || ||||||||||||||
Sbjct: 13860478 gccaccaggtgccttgtcttcgaccaatagtgagcggaagaaatctcc 13860525



 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 80/90 (88%)
 Strand = Plus / Plus

                                                                            
Query: 299      ctcaagtaagagcatctctgtcgccttatttcattcacgacttcattcactttcctggac 358
                ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| 
Sbjct: 13860722 ctcaaataggagcatctctgtcgccttatttcattcaccacttcatttactttcctggaa 13860781

                                              
Query: 359      aatgcattatcaaattgctccaatgccaac 388
                | | | |||||| ||||||||||| |||||
Sbjct: 13860782 agttcgttatcatattgctccaataccaac 13860811
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                            
Query: 160      tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 219
                ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 13814698 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13814757

                                                                
Query: 220      gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctcc 267
                |||||||||||| ||||| || ||||| || || ||||||||||||||
Sbjct: 13814758 gccaccaggtgccttgtcttcgaccaatagtgagcggaagaaatctcc 13814805



 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 80/90 (88%)
 Strand = Plus / Plus

                                                                            
Query: 299      ctcaagtaagagcatctctgtcgccttatttcattcacgacttcattcactttcctggac 358
                ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| 
Sbjct: 13815002 ctcaaataggagcatctctgtcgccttatttcattcaccacttcatttactttcctggaa 13815061

                                              
Query: 359      aatgcattatcaaattgctccaatgccaac 388
                | | | |||||| ||||||||||| |||||
Sbjct: 13815062 agttcgttatcatattgctccaataccaac 13815091
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>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 50021

 Score =  127 bits (64), Expect = 3e-26
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                         
Query: 160   tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 219
             ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 29221 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 29280

                                                             
Query: 220   gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctcc 267
             |||||||||||| ||||| || ||||| || || ||||||||||||||
Sbjct: 29281 gccaccaggtgccttgtcttcgaccaatagtgagcggaagaaatctcc 29328



 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 80/90 (88%)
 Strand = Plus / Plus

                                                                         
Query: 299   ctcaagtaagagcatctctgtcgccttatttcattcacgacttcattcactttcctggac 358
             ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||| 
Sbjct: 29525 ctcaaataggagcatctctgtcgccttatttcattcaccacttcatttactttcctggaa 29584

                                           
Query: 359   aatgcattatcaaattgctccaatgccaac 388
             | | | |||||| ||||||||||| |||||
Sbjct: 29585 agttcgttatcatattgctccaataccaac 29614
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>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078f20, complete sequence
          Length = 151042

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                         
Query: 164   gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 223
             |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 87657 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 87598

                              
Query: 224   ccaggtgctttgtcctc 240
             |||||||| ||||||||
Sbjct: 87597 ccaggtgccttgtcctc 87581



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                         
Query: 305   taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 364
             ||||| |||||||| || ||||||||||| |  |||||||| || ||||  |||| | ||
Sbjct: 87351 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 87292

                              
Query: 365   ttatcaaattgctccaa 381
             || ||||||||||||||
Sbjct: 87291 ttgtcaaattgctccaa 87275
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 164      gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 223
                |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 16347222 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16347163

                                 
Query: 224      ccaggtgctttgtcctc 240
                |||||||| ||||||||
Sbjct: 16347162 ccaggtgccttgtcctc 16347146



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 305      taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 364
                ||||| |||||||| || ||||||||||| |  |||||||| || ||||  |||| | ||
Sbjct: 16346916 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 16346857

                                 
Query: 365      ttatcaaattgctccaa 381
                || ||||||||||||||
Sbjct: 16346856 ttgtcaaattgctccaa 16346840
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 2e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 164      gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 223
                |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 16437201 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16437142

                                 
Query: 224      ccaggtgctttgtcctc 240
                |||||||| ||||||||
Sbjct: 16437141 ccaggtgccttgtcctc 16437125



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 305      taagagcatctctgtcgccttatttcattcacgacttcattcactttcctggacaatgca 364
                ||||| |||||||| || ||||||||||| |  |||||||| || ||||  |||| | ||
Sbjct: 16436895 taagaacatctctggcgtcttatttcattaattacttcatttaccttccgtgacagttca 16436836

                                 
Query: 365      ttatcaaattgctccaa 381
                || ||||||||||||||
Sbjct: 16436835 ttgtcaaattgctccaa 16436819
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>gb|BT016818.1| Zea mays clone Contig651 mRNA sequence
          Length = 686

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 184/229 (80%)
 Strand = Plus / Plus

                                                                       
Query: 160 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 219
           ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 377 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 436

                                                                       
Query: 220 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 279
           | | ||||| || ||||||||||| || |  || ||||| ||||| ||||| || || ||
Sbjct: 437 gacgccaggcgccttgtcctccactaaaaatgaccggaaaaaatcaccagatggttcacc 496

                                                                       
Query: 280 ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 339
           | ||| |||  |||| |  |||||||| ||||| ||||| || ||||||||||| || ||
Sbjct: 497 ccttctgcattgtcttaacctcaagtatgagcacctctggcgtcttatttcatttacaac 556

                                                            
Query: 340 ttcattcactttcctggacaatgcattatcaaattgctccaatgccaac 388
           ||| || || ||||| || | | | || |||||||||||||| ||||||
Sbjct: 557 ttcgttaaccttcctcgagagttcgttgtcaaattgctccaacgccaac 605
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>gb|AY107397.1| Zea mays PCO076624 mRNA sequence
          Length = 2256

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 184/229 (80%)
 Strand = Plus / Minus

                                                                        
Query: 160  tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 219
            ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 1839 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1780

                                                                        
Query: 220  gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 279
            | | ||||| || ||||||||||| || |  || ||||| ||||| ||||| || || ||
Sbjct: 1779 gacgccaggcgccttgtcctccactaaaaatgaccggaaaaaatcaccagatggttcacc 1720

                                                                        
Query: 280  ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 339
            | ||| |||  |||| |  |||||||| ||||| ||||| || ||||||||||| || ||
Sbjct: 1719 ccttctgcattgtcttaacctcaagtatgagcacctctggcgtcttatttcatttacaac 1660

                                                             
Query: 340  ttcattcactttcctggacaatgcattatcaaattgctccaatgccaac 388
            ||| || || ||||| || | | | || |||||||||||||| ||||||
Sbjct: 1659 ttcgttaaccttcctcgagagttcgttgtcaaattgctccaacgccaac 1611
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>gb|AY105862.1| Zea mays PCO076623 mRNA sequence
          Length = 924

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 149/183 (81%)
 Strand = Plus / Minus

                                                                       
Query: 160 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 219
           ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | 
Sbjct: 830 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 771

                                                                       
Query: 220 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 279
           | | |||||||| |||||||| |  |  |  || ||||| ||||||||||| || |||||
Sbjct: 770 gacgccaggtgccttgtcctctattagaaatgaccggaaaaaatctccagatggttcgcc 711

                                                                       
Query: 280 ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 339
           | ||| ||| |||||||  |||||||| ||||| ||||| ||||| |||||||| || ||
Sbjct: 710 ccttctgcatagtctcaacctcaagtatgagcacctctggcgcctaatttcatttacaac 651

              
Query: 340 ttc 342
           |||
Sbjct: 650 ttc 648
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>gb|BT016644.1| Zea mays clone Contig477 mRNA sequence
          Length = 1961

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 183/229 (79%)
 Strand = Plus / Minus

                                                                        
Query: 160  tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 219
            ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 1302 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1243

                                                                        
Query: 220  gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 279
            | | ||||| || ||||||||||| || |  || ||||| ||||| ||||| || || ||
Sbjct: 1242 gacgccaggcgccttgtcctccactaaaaatgaccggaaaaaatcaccagatggttcacc 1183

                                                                        
Query: 280  ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 339
            | ||| |||  |||| |  |||||||| ||||| ||||| || ||||||||||| || ||
Sbjct: 1182 ccttctgcattgtcttaacctcaagtatgagcacctctggcgtcttatttcatttacaac 1123

                                                             
Query: 340  ttcattcactttcctggacaatgcattatcaaattgctccaatgccaac 388
            ||  || || ||||| || | | | || |||||||||||||| ||||||
Sbjct: 1122 ttggttaaccttcctcgagagttcgttgtcaaattgctccaacgccaac 1074
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>gb|BT016902.1| Zea mays clone Contig735 mRNA sequence
          Length = 987

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 148/183 (80%)
 Strand = Plus / Plus

                                                                       
Query: 160 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 219
           ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | 
Sbjct: 438 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 497

                                                                       
Query: 220 gccaccaggtgctttgtcctccaccaacagcgaacggaagaaatctccagacgggtcgcc 279
           | | |||||||| |||||||| |  |  |  || ||||| ||||||||||| || |||||
Sbjct: 498 gacgccaggtgccttgtcctctattagaaatgaccggaaaaaatctccagatggttcgcc 557

                                                                       
Query: 280 ctttcggcacagtctcagtctcaagtaagagcatctctgtcgccttatttcattcacgac 339
           | ||| ||| ||||| |  |||||||| ||||| ||||| ||||| |||||||| || ||
Sbjct: 558 ccttctgcatagtcttaacctcaagtatgagcacctctggcgcctaatttcatttacaac 617

              
Query: 340 ttc 342
           |||
Sbjct: 618 ttc 620
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>emb|AL845430.12| Mouse DNA sequence from clone RP23-402L5 on chromosome 2, complete
             sequence
          Length = 201232

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 56    agtacaaactcttttcaaaaaga 78
             |||||||||||||||||||||||
Sbjct: 27972 agtacaaactcttttcaaaaaga 27994
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>gb|AC093115.2| Homo sapiens chromosome 3 clone RP11-360G1, complete sequence
          Length = 173493

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 61    aaactcttttcaaaaagaaaaa 82
             ||||||||||||||||||||||
Sbjct: 72230 aaactcttttcaaaaagaaaaa 72251
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>gb|AC012519.9|AC012519 Homo sapiens 3 BAC RP11-1036F1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184447

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 61    aaactcttttcaaaaagaaaaa 82
             ||||||||||||||||||||||
Sbjct: 72223 aaactcttttcaaaaagaaaaa 72244
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>gb|AY754728.1| Homo sapiens sarcoglycan epsilon (SGCEP) pseudogene, complete
           sequence
          Length = 1641

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  gagtacaaactcttttcaaaa 75
           |||||||||||||||||||||
Sbjct: 962 gagtacaaactcttttcaaaa 982
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                             
Query: 43       gtaattaagtacgagtacaaactcttttc 71
                |||||||||||| ||||||||||||||||
Sbjct: 16427078 gtaattaagtac-agtacaaactcttttc 16427051
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>emb|AL357522.10| Human DNA sequence from clone RP11-685G11 on chromosome 6 Contains two
             CpG islands, complete sequence
          Length = 124506

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    aaactcttttcaaaaagaaaa 81
             |||||||||||||||||||||
Sbjct: 96611 aaactcttttcaaaaagaaaa 96631
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>gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genomic sequence, complete
             sequence
          Length = 146775

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 43    gtaattaagtacgagtacaaactcttttc 71
             |||||||||||| ||||||||||||||||
Sbjct: 40132 gtaattaagtac-agtacaaactcttttc 40159
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>ref|NG_004723.1| Homo sapiens sarcoglycan, epsilon, pseudogene (SGCEP) on chromosome
           2
          Length = 1641

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  gagtacaaactcttttcaaaa 75
           |||||||||||||||||||||
Sbjct: 962 gagtacaaactcttttcaaaa 982
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                             
Query: 43       gtaattaagtacgagtacaaactcttttc 71
                |||||||||||| ||||||||||||||||
Sbjct: 16420711 gtaattaagtac-agtacaaactcttttc 16420684
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>gb|AC023128.4| Homo sapiens BAC clone RP11-357J9 from 2, complete sequence
          Length = 169113

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    gagtacaaactcttttcaaaa 75
             |||||||||||||||||||||
Sbjct: 73227 gagtacaaactcttttcaaaa 73207
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>gb|AF270379.1|AF270379 Staphylococcus epidermidis strain SR1 clone step.4033c10 genomic
          sequence
          Length = 1609

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 14 ctttatatgaaaatctcagta 34
          |||||||||||||||||||||
Sbjct: 16 ctttatatgaaaatctcagta 36
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>gb|AF270098.1|AF270098 Staphylococcus epidermidis strain SR1 clone step.1048g07 genomic
            sequence
          Length = 3379

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 14   ctttatatgaaaatctcagta 34
            |||||||||||||||||||||
Sbjct: 2988 ctttatatgaaaatctcagta 2968
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>gb|AF269737.1|AF269737 Staphylococcus epidermidis strain SR1 clone step.1020g09 genomic
           sequence
          Length = 2858

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 14  ctttatatgaaaatctcagta 34
           |||||||||||||||||||||
Sbjct: 411 ctttatatgaaaatctcagta 431
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>ref|NM_102680.2| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA
           binding / nucleic acid binding AT1G29400 (AML5)
           transcript variant AT1G29400.1 mRNA, complete cds
          Length = 2880

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 aatctctaccaaccaaaata 143
           ||||||||||||||||||||
Sbjct: 34  aatctctaccaaccaaaata 15
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>ref|NM_179396.1| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA
           binding / nucleic acid binding AT1G29400 (AML5)
           transcript variant AT1G29400.2 mRNA, complete cds
          Length = 2921

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 aatctctaccaaccaaaata 143
           ||||||||||||||||||||
Sbjct: 78  aatctctaccaaccaaaata 59
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>gb|AC168120.3| Mus musculus BAC clone RP23-49A14 from chromosome 3, complete sequence
          Length = 198651

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    acaaactcttttcaaaaaga 78
             ||||||||||||||||||||
Sbjct: 87962 acaaactcttttcaaaaaga 87943
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>gb|AC123683.6| Mus musculus chromosome 9, clone RP23-296I6, complete sequence
          Length = 189100

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    agtacaaacagggtaattaa 50
             ||||||||||||||||||||
Sbjct: 57663 agtacaaacagggtaattaa 57682
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>gb|AC163624.4| Mus musculus BAC clone RP24-558P12 from chromosome 3, complete sequence
          Length = 197711

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    acaaactcttttcaaaaaga 78
             ||||||||||||||||||||
Sbjct: 25967 acaaactcttttcaaaaaga 25948
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>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
              complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 152    atgaagcttcaggtcatcttgctc 175
              |||||||||||| |||||||||||
Sbjct: 135763 atgaagcttcagttcatcttgctc 135786
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>gb|AC110823.5| Mus musculus BAC clone RP24-366C12 from chromosome 7, complete sequence
          Length = 141116

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    aaagaaaaacggtccattta 93
             ||||||||||||||||||||
Sbjct: 42222 aaagaaaaacggtccattta 42203
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>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence
          Length = 221903

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    ccaaaatatcacaccaatga 155
              ||||||||||||||||||||
Sbjct: 103131 ccaaaatatcacaccaatga 103112
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>gb|AC016255.24| Homo sapiens 3 BAC RP11-883M5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 84112

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    actcttttcaaaaagaaaaa 82
             ||||||||||||||||||||
Sbjct: 61114 actcttttcaaaaagaaaaa 61095
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>gb|AY070368.1| Arabidopsis thaliana putative RNA-binding protein MEI2 (At1g29400)
           mRNA, complete cds
          Length = 2927

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 aatctctaccaaccaaaata 143
           ||||||||||||||||||||
Sbjct: 73  aatctctaccaaccaaaata 54
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>emb|AL672177.9| Mouse DNA sequence from clone RP23-292D8 on chromosome 11 Contains the 3'
              end of the Gria1 gene for glutamate receptor, ionotropic,
              AMPA1 (alpha 1), complete sequence
          Length = 157692

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     gagtctttatatgaaaatctcagt 33
              ||||| ||||||||||||||||||
Sbjct: 130476 gagtcgttatatgaaaatctcagt 130453
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>emb|AL672240.13| Mouse DNA sequence from clone RP23-27I16 on chromosome 11, complete
              sequence
          Length = 224603

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    ttcattcacgacttcattca 347
              ||||||||||||||||||||
Sbjct: 105313 ttcattcacgacttcattca 105294
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>dbj|AK134256.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
           enriched library, clone:5930410P22
           product:unclassifiable, full insert sequence
          Length = 2085

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  agtacaaacagggtaattaa 50
           ||||||||||||||||||||
Sbjct: 488 agtacaaacagggtaattaa 507
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>gb|AY062613.1| Arabidopsis thaliana RNA-binding protein MEI2, putative (F15D2.30)
           mRNA, complete cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 aatctctaccaaccaaaata 143
           ||||||||||||||||||||
Sbjct: 73  aatctctaccaaccaaaata 54
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>dbj|AB179423.1| Macaca fascicularis testis cDNA clone: QtsA-19777, similar to human
            v-raf murine sarcoma viral oncogene homolog B1 (BRAF),
            mRNA, RefSeq: NM_004333.2
          Length = 2849

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  accaggtgctttgtcctcca 242
            ||||||||||||||||||||
Sbjct: 2314 accaggtgctttgtcctcca 2333
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>gb|AC068667.6|AC068667 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete
             sequence
          Length = 130653

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   aatctctaccaaccaaaata 143
             ||||||||||||||||||||
Sbjct: 36872 aatctctaccaaccaaaata 36891
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>gb|AC150312.2| Mus musculus BAC clone RP23-336M16 from 7, complete sequence
          Length = 207429

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     aaagaaaaacggtccattta 93
              ||||||||||||||||||||
Sbjct: 197196 aaagaaaaacggtccattta 197215
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>gb|AC148975.3| Mus musculus BAC clone RP23-398E10 from 7, complete sequence
          Length = 209924

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    aaagaaaaacggtccattta 93
             ||||||||||||||||||||
Sbjct: 31014 aaagaaaaacggtccattta 31033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,738,268
Number of Sequences: 3902068
Number of extensions: 4738268
Number of successful extensions: 97375
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 97180
Number of HSP's gapped (non-prelim): 198
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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