ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl26a01 |
|---|---|
| Clone Library Name | barley_pub |
>RUVA_SYMTH (Q67Q98) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 205 Score = 31.6 bits (70), Expect = 0.52 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = -2 Query: 291 VSVQVFSGNHSAEFKKAIAEDDLPKTCRITDIFGFKRSRPLHRSLKGGPGRIP 133 V++ V S A F++A+A +DL CR+ I G K ++ L LK G +P Sbjct: 85 VALAVLSTTDPAAFRRAVAFEDLDAICRVPGI-GRKTAQRLVLELKDKIGAVP 136
>PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineralization protein)| Length = 416 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +3 Query: 63 QNWVHACGDRLCTTLQTMQ 119 QN + ACGDRLC TL Q Sbjct: 67 QNRIRACGDRLCLTLSRAQ 85
>SPB8_BOVIN (Q5BIR5) Serpin B8| Length = 374 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +3 Query: 159 ASGAKAVIA*SRICR*SGKFWAGHP 233 A+GA AV+ SR CR KF A HP Sbjct: 328 AAGATAVVRNSRCCRMEPKFCADHP 352
>FEOB_LEGPL (Q5WTE1) Ferrous iron transport protein B| Length = 751 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +2 Query: 5 HT*WINGIGQSCATIEKNQSKLGSCVWGQTMYYTADHAVCQSI 133 H ++ GI + +I N S+LGS +W AD + QS+ Sbjct: 601 HFDFLGGIKAAFGSIPANLSELGSALWNPVSASAADSELSQSV 643
>KHSE_SALTY (P65226) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 309 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = +3 Query: 63 QNWVHACGDRLCTTL-------QTMQYVSPLGSGLDLPSASGAKAVIA*SRIC 200 +N V+ C +R C L T++ P+GSGL + S A++A + C Sbjct: 62 ENIVYQCWERFCQALGKTIPVAMTLEKNMPIGSGLGSSACSVVAALVAMNEHC 114
>KHSE_SALTI (P65227) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 309 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = +3 Query: 63 QNWVHACGDRLCTTL-------QTMQYVSPLGSGLDLPSASGAKAVIA*SRIC 200 +N V+ C +R C L T++ P+GSGL + S A++A + C Sbjct: 62 ENIVYQCWERFCQALGKTIPVAMTLEKNMPIGSGLGSSACSVVAALVAMNEHC 114
>HYUA_PSESN (Q01262) Hydantoin utilization protein A (ORF2)| Length = 690 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = +2 Query: 125 QSIGIRPGPPFSERCKGRDRLKPNMSVIRQVLGR 226 +S G RPGP C G LKP +S VLGR Sbjct: 352 RSAGSRPGPA----CYGHGGLKPTVSDANVVLGR 381
>LY9_MOUSE (Q01965) T-lymphocyte surface antigen Ly-9 precursor (Lymphocyte| antigen 9) (Cell-surface molecule Ly-9) Length = 654 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/44 (22%), Positives = 22/44 (50%) Frame = -2 Query: 300 RRTVSVQVFSGNHSAEFKKAIAEDDLPKTCRITDIFGFKRSRPL 169 R + + G+H+ +++ + DLP TC+ + S+P+ Sbjct: 193 REDTHLNTYDGSHTLRVSQSVCDPDLPYTCKAWNPVSQNSSQPV 236
>DEFN_ARCDE (P84156) Defensin ARD1| Length = 44 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +2 Query: 68 LGSCVWGQTMYYTADHAVCQSIGIRPG 148 +GSCVWG Y + +A C+ G + G Sbjct: 4 IGSCVWGAVNYTSNCNAECKRRGYKGG 30
>MSRA_COREF (Q8FLU6) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 217 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%) Frame = +2 Query: 77 CVWG-QTMYYTADHAVCQSIGIR----PGPPFSERCKGR 178 C WG + MY+ D S+G P P + E C GR Sbjct: 56 CFWGVEQMYWKMDGVESTSVGYAGGYTPNPTYREVCSGR 94
>SH2D5_PONPY (Q5R732) SH2 domain-containing protein 5| Length = 339 Score = 27.3 bits (59), Expect = 9.8 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Frame = -1 Query: 316 GGRPSKEDSERAGFQRQPFGRVQEGDRRG*PAQNLPDYRHIRLQAITAFA---PLAEGRS 146 G P K S G R+PFGR D+ L +R + + + P +EGR+ Sbjct: 81 GEVPLKPLSSSGGLVREPFGR----DQLSQNVHALVSFRRLPAEGLVGSGKELPESEGRA 136 Query: 145 RPDPNGLTYC 116 R G YC Sbjct: 137 RHARLGNPYC 146
>SH2D5_HUMAN (Q6ZV89) SH2 domain-containing protein 5| Length = 339 Score = 27.3 bits (59), Expect = 9.8 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Frame = -1 Query: 316 GGRPSKEDSERAGFQRQPFGRVQEGDRRG*PAQNLPDYRHIRLQAITAFA---PLAEGRS 146 G P K S G R+PFGR D+ L +R + + + P +EGR+ Sbjct: 81 GEVPLKPLSSSGGLVREPFGR----DQLSQNVHALVSFRRLPAEGLVGSGKELPESEGRA 136 Query: 145 RPDPNGLTYC 116 R G YC Sbjct: 137 RHARLGNPYC 146
>MTLD_YERPE (Q8Z9X0) Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)| Length = 387 Score = 27.3 bits (59), Expect = 9.8 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = -1 Query: 298 EDSERAGFQRQPFGRVQEGDRRG*PAQNLPDYRHIRLQAITAFAPLAEGRSRPDP 134 +D ER G RQP ++ GDR P +Y+ +T A RS DP Sbjct: 288 DDVERVG--RQPLRKLSAGDRLIKPLLGTLEYQLPHDSLVTGIAAAMSYRSEQDP 340
>KHSE_SHIFL (Q83MH9) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 310 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = +3 Query: 63 QNWVHACGDRLCTTL-------QTMQYVSPLGSGLDLPSASGAKAVIA*SRIC 200 +N V+ C +R C L T++ P+GSGL + S A++A + C Sbjct: 62 ENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHC 114
>KHSE_ECOLI (P00547) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 310 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = +3 Query: 63 QNWVHACGDRLCTTL-------QTMQYVSPLGSGLDLPSASGAKAVIA*SRIC 200 +N V+ C +R C L T++ P+GSGL + S A++A + C Sbjct: 62 ENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHC 114
>KHSE_ECOL6 (Q8FLD8) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 310 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = +3 Query: 63 QNWVHACGDRLCTTL-------QTMQYVSPLGSGLDLPSASGAKAVIA*SRIC 200 +N V+ C +R C L T++ P+GSGL + S A++A + C Sbjct: 62 ENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHC 114
>KHSE_ECO57 (Q8XA82) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 310 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%) Frame = +3 Query: 63 QNWVHACGDRLCTTL-------QTMQYVSPLGSGLDLPSASGAKAVIA*SRIC 200 +N V+ C +R C L T++ P+GSGL + S A++A + C Sbjct: 62 ENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHC 114 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,197,447 Number of Sequences: 219361 Number of extensions: 1198799 Number of successful extensions: 2917 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2859 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2917 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
