ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADAM7_MOUSE (O35227) ADAM 7 precursor (A disintegrin and metallo... 30 1.8
2MURB_SALPA (Q5PK78) UDP-N-acetylenolpyruvoylglucosamine reductas... 29 2.4
3ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3... 29 3.1
4CA037_RAT (Q68FS7) Protein C1orf37 homolog 29 3.1
5YGDH_SCHPO (O94574) Putative 2-hydroxyacid dehydrogenase C1773.1... 28 4.1
6ADAM7_RAT (Q63180) ADAM 7 precursor (A disintegrin and metallopr... 28 4.1
7CA037_MOUSE (Q9JJB9) Protein C1orf37 homolog 28 7.0

>ADAM7_MOUSE (O35227) ADAM 7 precursor (A disintegrin and metalloproteinase|
           domain 7)
          Length = 788

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 120 NYRLCFRIHKQG*DFGVCKHRNN 188
           ++ LC+R++K+G  FG CK++ N
Sbjct: 521 SHSLCYRMNKKGNRFGYCKNKGN 543



to top

>MURB_SALPA (Q5PK78) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 342

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 147 CVCENITCS*LHTGRHFKLTFV-CRFAY 67
           CVC+ + C  L TG+  +L+   CRF Y
Sbjct: 131 CVCDYVDCVELETGKRLRLSAAECRFGY 158



to top

>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)|
           (ATP-dependent helicase xnp-1) (X-linked nuclear protein
           1)
          Length = 1359

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 377 SEQEDDDQDKSVDAKKKQSRHRAK 306
           SE++DDD+++S     K+SR RAK
Sbjct: 64  SEEDDDDEEESPRKSSKKSRKRAK 87



to top

>CA037_RAT (Q68FS7) Protein C1orf37 homolog|
          Length = 376

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 383 KLSEQEDDDQDKSVDAKKKQSRHRAKVTG 297
           ++  QE+  Q++SV  KKK  RH+  + G
Sbjct: 99  EMDAQEESTQERSVSRKKKSKRHKEDLDG 127



to top

>YGDH_SCHPO (O94574) Putative 2-hydroxyacid dehydrogenase C1773.17c (EC|
           1.-.-.-)
          Length = 340

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 100 VPPSMELTTGYVFAYTNRARILVFANIETIINTGLPKNP 216
           + P   + T +  A T      V A+IET ++TG+P NP
Sbjct: 295 IQPHCGVYTNFTVAKTEEC---VLASIETFLDTGIPTNP 330



to top

>ADAM7_RAT (Q63180) ADAM 7 precursor (A disintegrin and metalloproteinase|
           domain 7) (Epididymal apical protein I) (EAP I)
          Length = 789

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +3

Query: 120 NYRLCFRIHKQG*DFGVCKHRNN 188
           ++ LC+R++++G  FG CK+++N
Sbjct: 521 SHSLCYRMNQKGNRFGYCKNKDN 543



to top

>CA037_MOUSE (Q9JJB9) Protein C1orf37 homolog|
          Length = 375

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 383 KLSEQEDDDQDKSVDAKKKQSRHRAKVTG 297
           ++  QE+  Q++SV  KKK  RH+    G
Sbjct: 99  EMDAQEESTQERSVSRKKKSKRHKEDPDG 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,817,457
Number of Sequences: 219361
Number of extensions: 996071
Number of successful extensions: 1982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1972
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top