>emb|BX539316.6| Mouse DNA sequence from clone RP24-216F23 on chromosome 7, complete
             sequence
          Length = 178673

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 292   cttcaaccagtgacctttgctc 313
             ||||||||||||||||||||||
Sbjct: 15487 cttcaaccagtgacctttgctc 15466



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    cttcaaccagtgacctttgc 311
              ||||||||||||||||||||
Sbjct: 118189 cttcaaccagtgacctttgc 118170

>ref|XM_478438.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4008

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 87   atgttagcttgaagtgcctc 106
            ||||||||||||||||||||
Sbjct: 2126 atgttagcttgaagtgcctc 2107

>ref|NM_152384.2| Homo sapiens Bardet-Biedl syndrome 5 (BBS5), mRNA
          Length = 3196

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  aggtattaagtacaaaataa 254
            ||||||||||||||||||||
Sbjct: 3086 aggtattaagtacaaaataa 3067

>gb|AY604004.1| Homo sapiens Bardet-Biedl syndrome protein 5 isoform 2 (BBS5) mRNA,
            complete cds
          Length = 3128

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  aggtattaagtacaaaataa 254
            ||||||||||||||||||||
Sbjct: 3039 aggtattaagtacaaaataa 3020

>gb|AY604003.1| Homo sapiens Bardet-Biedl syndrome protein 5 isoform 1 (BBS5) mRNA,
            complete cds
          Length = 3191

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  aggtattaagtacaaaataa 254
            ||||||||||||||||||||
Sbjct: 3102 aggtattaagtacaaaataa 3083

>gb|AC132573.2| Mus musculus BAC clone RP24-410H24 from chromosome 15, complete sequence
          Length = 194219

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    aacaataattaacacaggac 202
              ||||||||||||||||||||
Sbjct: 144959 aacaataattaacacaggac 144940

>emb|CR762383.11| Zebrafish DNA sequence from clone DKEY-28M7 in linkage group 6,
             complete sequence
          Length = 101572

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    caacatgctctgctacaacc 46
             ||||||||||||||||||||
Sbjct: 54837 caacatgctctgctacaacc 54856

>gb|AC122452.4| Mus musculus BAC clone RP24-255M5 from chromosome 16, complete sequence
          Length = 181463

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 47    atttgagagttttggaaagcatat 70
             |||||| |||||||||||||||||
Sbjct: 12680 atttgaaagttttggaaagcatat 12657

>gb|AC125526.4| Mus musculus BAC clone RP24-498L21 from chromosome 15, complete
             sequence
          Length = 178670

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   tgcaaacatagaaacaataa 190
             ||||||||||||||||||||
Sbjct: 67027 tgcaaacatagaaacaataa 67008

>gb|AC123822.4| Mus musculus BAC clone RP23-477F12 from chromosome 7, complete sequence
          Length = 179943

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    cttcaaccagtgacctttgc 311
              ||||||||||||||||||||
Sbjct: 159913 cttcaaccagtgacctttgc 159932

>gb|AC131735.3| Mus musculus BAC clone RP23-103D3 from 2, complete sequence
          Length = 218830

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 163    ttggtgtttgcaaacatagaaaca 186
              |||||||||| |||||||||||||
Sbjct: 177967 ttggtgtttgtaaacatagaaaca 177990

>gb|AC108837.8| Mus musculus chromosome 15, clone RP23-287P15, complete sequence
          Length = 226886

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   aacaataattaacacaggac 202
             ||||||||||||||||||||
Sbjct: 71337 aacaataattaacacaggac 71318

>gb|AC107367.13| Mus musculus chromosome 3, clone RP23-331D18, complete sequence
          Length = 204398

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 238    tattaagtacaaaataatcaacac 261
              |||||| |||||||||||||||||
Sbjct: 139286 tattaactacaaaataatcaacac 139263

>emb|BX530056.17| Zebrafish DNA sequence from clone CH211-208I16 in linkage group 18,
              complete sequence
          Length = 235804

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 54     agttttggaaagcatatgcaaatctaca 81
              ||||||| |||||||||||||| |||||
Sbjct: 231803 agttttgaaaagcatatgcaaaactaca 231776

>gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP23-75P20, complete
             sequence
          Length = 234105

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ttatcttgatcatcatcctc 368
             ||||||||||||||||||||
Sbjct: 23072 ttatcttgatcatcatcctc 23053

>emb|AL834305.1|HSM805343 Homo sapiens mRNA; cDNA DKFZp762I194 (from clone DKFZp762I194)
          Length = 3187

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  aggtattaagtacaaaataa 254
            ||||||||||||||||||||
Sbjct: 3077 aggtattaagtacaaaataa 3058

>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete sequence
          Length = 210186

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    aacatgctctgctacaaccatttg 51
             |||||||| |||||||||||||||
Sbjct: 19252 aacatgctatgctacaaccatttg 19229

>emb|BX897688.7| Zebrafish DNA sequence from clone DKEY-127J5, complete sequence
          Length = 70570

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    tatccaacatgctctgctac 42
             ||||||||||||||||||||
Sbjct: 23406 tatccaacatgctctgctac 23425

>gb|AC107311.8| Homo sapiens 3 BAC RP11-576M8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192233

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    ctaggattttggtgtttgca 174
              ||||||||||||||||||||
Sbjct: 104420 ctaggattttggtgtttgca 104401

>dbj|AB169341.1| Macaca fascicularis testis cDNA, clone: QtsA-19140, similar to human
            hypothetical protein DKFZp762I194 (DKFZp762I194), mRNA,
            RefSeq: NM_152384.1
          Length = 1360

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  aggtattaagtacaaaataa 254
            ||||||||||||||||||||
Sbjct: 1263 aggtattaagtacaaaataa 1244

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 87       atgttagcttgaagtgcctc 106
                ||||||||||||||||||||
Sbjct: 20099641 atgttagcttgaagtgcctc 20099660

>dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region
          Length = 425935

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   atcatcatcctcctgctccg 376
             ||||||||||||||||||||
Sbjct: 18182 atcatcatcctcctgctccg 18163

>gb|AC093899.3| Homo sapiens BAC clone RP11-724O16 from 2, complete sequence
          Length = 172816

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   aggtattaagtacaaaataa 254
             ||||||||||||||||||||
Sbjct: 63990 aggtattaagtacaaaataa 63971

>dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1372_D12
          Length = 179898

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   atgttagcttgaagtgcctc 106
            ||||||||||||||||||||
Sbjct: 2029 atgttagcttgaagtgcctc 2048

>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   ctgcccaagaacccatcaag 221
             ||||||||||||||||||||
Sbjct: 43714 ctgcccaagaacccatcaag 43695

>emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chromosome X, complete
             sequence
          Length = 112893

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   ttatcttgatcatcatcctc 368
             ||||||||||||||||||||
Sbjct: 28976 ttatcttgatcatcatcctc 28957

>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1657_A07
          Length = 125217

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    atgttagcttgaagtgcctc 106
             ||||||||||||||||||||
Sbjct: 64244 atgttagcttgaagtgcctc 64263

>gb|AC154230.2| Mus musculus BAC clone RP24-156E24 from 16, complete sequence
          Length = 136341

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    atttgagagttttggaaagcatat 70
             |||||| |||||||||||||||||
Sbjct: 64730 atttgaaagttttggaaagcatat 64753

>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete
              sequence
          Length = 205515

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     aacatgctctgctacaaccatttg 51
              |||||||| |||||||||||||||
Sbjct: 101511 aacatgctatgctacaaccatttg 101488

>emb|AL773542.11| Zebrafish DNA sequence from clone CH211-174L22, complete sequence
          Length = 163443

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 54    agttttggaaagcatatgcaaatctaca 81
             ||||||| |||||||||||||| |||||
Sbjct: 18501 agttttgaaaagcatatgcaaaactaca 18474

>emb|AL731708.17| Mouse DNA sequence from clone RP23-103D3 on chromosome 2, complete
              sequence
          Length = 218614

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 163    ttggtgtttgcaaacatagaaaca 186
              |||||||||| |||||||||||||
Sbjct: 177751 ttggtgtttgtaaacatagaaaca 177774


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,942,638
Number of Sequences: 3902068
Number of extensions: 3942638
Number of successful extensions: 79424
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79352
Number of HSP's gapped (non-prelim): 72
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)