>MBD4_HUMAN (O95243) Methyl-CpG-binding domain protein 4 (EC 3.2.2.-)|
           (Methyl-CpG-binding protein MBD4) (Methyl-CpG-binding
           endonuclease 1) (Mismatch-specific DNA N-glycosylase)
          Length = 580

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 22/57 (38%), Positives = 36/57 (63%)
 Frame = -3

Query: 423 RNIKKLSKQYVGNEWTHVTQLCGVGKYAADAYVIFCAGRAREVVPDDHKLVDYWNYV 253
           + I K S +Y+  +W +  +L G+GKY  D+Y IFC    ++V P+DHKL  Y +++
Sbjct: 514 KTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL 570

>MBD4_MOUSE (Q9Z2D7) Methyl-CpG-binding domain protein 4 (EC 3.2.2.-)|
           (Methyl-CpG-binding protein MBD4) (Mismatch-specific DNA
           N-glycosylase)
          Length = 554

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 22/57 (38%), Positives = 36/57 (63%)
 Frame = -3

Query: 423 RNIKKLSKQYVGNEWTHVTQLCGVGKYAADAYVIFCAGRAREVVPDDHKLVDYWNYV 253
           + I K S +Y+  +W +  +L G+GKY  D+Y IFC    ++V P+DHKL  Y +++
Sbjct: 488 KTIIKFSDEYLTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWL 544

>FOXL2_HUMAN (P58012) Forkhead box protein L2|
          Length = 376

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 258 NSSNQLTCDHQVPPPSPYPHKILHKHQLH 344
           NS N L      PPP P+PH   H H LH
Sbjct: 272 NSYNGLGGPPAAPPPPPHPHPHPHAHHLH 300

>GLNA2_MYCTU (P64245) Probable glutamine synthetase 2 (EC 6.3.1.2)|
           (Glutamate--ammonia ligase 2)
          Length = 446

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 231 VPWATQSRHNSSNQLTCDHQVPPPSP 308
           +PWAT S H+ S ++ CD  +P  SP
Sbjct: 79  LPWATSSGHHHSARMFCDITMPDGSP 104

>GLNA2_MYCBO (P64246) Probable glutamine synthetase 2 (EC 6.3.1.2)|
           (Glutamate--ammonia ligase 2)
          Length = 446

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 231 VPWATQSRHNSSNQLTCDHQVPPPSP 308
           +PWAT S H+ S ++ CD  +P  SP
Sbjct: 79  LPWATSSGHHHSARMFCDITMPDGSP 104

>ESR2_ICTPU (Q9IAK1) Estrogen receptor beta (ER-beta)|
          Length = 575

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +3

Query: 159 APPSTAASPCTSLNIYWN*TNPSAVPWATQSRHNSSNQLTCDHQVPPPSPYPHKILHKHQ 338
           AP + A +P  S +++W+  NP A+P         +  L C   +P   P+ H      +
Sbjct: 60  APENPAIAPPLSPSLFWSSHNPHAMP---------ALPLHCPPALPYSEPHIHTAWVDTK 110

Query: 339 LHTYRRHKA 365
            HT  RH +
Sbjct: 111 PHTSGRHSS 119

>REPS1_HUMAN (Q96D71) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 744

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 159 APPSTAASPCTSLNIYWN*TNPSAVPWATQSRHNSSNQLTC--DHQVPPPSP 308
           APPS + S   SLN  W   N S+  W T S  +SS+Q     D  + P  P
Sbjct: 344 APPSKSPS-MPSLNQTWPELNQSSEQWETFSERSSSSQTLTQFDSNIAPADP 394

>REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 743

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 159 APPSTAASPCTSLNIYWN*TNPSAVPWATQSRHNSSNQLTC--DHQVPPPSP 308
           APPS + S   SLN  W   N S+  W T S  +SS+Q     D  + P  P
Sbjct: 344 APPSKSPS-MPSLNQTWPELNQSSEQWETFSERSSSSQTLTQFDSNIAPADP 394

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = +3

Query: 114 PTPVAL*NYPIQDCMAPPSTAASPCTSLNIYWN*TNPSAVPWATQSRHNSSNQLTCDHQV 293
           P+PV     P+    APPS A SP  S        +PS  P  + S   S +       +
Sbjct: 311 PSPVPPSPAPVPPSPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSPSPSPSPSPI 370

Query: 294 PPPSPYP 314
           P PSP P
Sbjct: 371 PSPSPKP 377

>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)|
           (P-Frk)
          Length = 375

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 294 PPPSPYPHKILHKHQLH 344
           PPP P+PH   H H LH
Sbjct: 283 PPPPPHPHPHPHAHHLH 299

>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor|
          Length = 402

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 285 HQVPPPSPYPHKILHKHQLHTYRRHKAA 368
           H  P P P+PH   H H  H ++ H+ A
Sbjct: 210 HSHPHPHPHPHPHPHPHPHHGHQLHENA 237

>REP1_USTMA (Q99109) Repellent protein 1 precursor [Contains: Rep1-1; Rep1-2;|
           Rep1-3; Rep1-4; Rep1-5; Rep1-6; Rep1-7; Rep1-8; Rep1-9;
           Rep1-10; Rep1-C]
          Length = 652

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
 Frame = +3

Query: 108 TKPTPVA-L*NYPIQDCMAPPSTAASPCTSLNIYWN*TNPSAVPWATQSRHNSSNQLTCD 284
           +KPTP       P  DC APP+    P  S       T PS  P       ++S   T  
Sbjct: 457 SKPTPPKQTVTKPSADCDAPPAVTPKPKPS-------TKPSPSPTTPPPSKDTSKPTTKP 509

Query: 285 HQVPPPSPYP 314
              P PS  P
Sbjct: 510 EPKPQPSDKP 519

>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1183

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
 Frame = +3

Query: 168 STAASPCTSLNIYWN*TNPSAVPWATQSRHNSSNQLTCDHQVPPPSPYPHKI--LHKHQL 341
           STA  P  + + +     P   P   Q  H +S         PPP  YPH +   + H  
Sbjct: 468 STAHPPAPAHHHHQQQQQPQPQPQPQQHHHGNSGP-------PPPGAYPHPLESSNSHHA 520

Query: 342 HTY 350
           H Y
Sbjct: 521 HPY 523

>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind)|
           (L(1)omb) (Protein bifid)
          Length = 972

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/69 (26%), Positives = 22/69 (31%)
 Frame = +3

Query: 105 HTKPTPVAL*NYPIQDCMAPPSTAASPCTSLNIYWN*TNPSAVPWATQSRHNSSNQLTCD 284
           H    P A  + P     APP+                 P+ +P  T   H    Q    
Sbjct: 193 HPSHHPTAAHHSPSTGAAAPPA----------------GPTGLPPPTPPHHLQQQQQQQQ 236

Query: 285 HQVPPPSPY 311
           H  PPP PY
Sbjct: 237 HPAPPPPPY 245

>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 285 HQVPPPSPYPHKILHKHQL 341
           HQ+P P P PH   H H+L
Sbjct: 233 HQIPHPHPQPHSQPHGHRL 251

>PHLA1_RAT (Q9QZA1) Pleckstrin homology-like domain family A member 1|
           (Proline- and glutamine-rich protein) (PQR protein)
          Length = 263

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 285 HQVPPPSPYPHKILHKHQ-LHT 347
           H  P P P+PH++ H HQ LH+
Sbjct: 227 HPHPHPHPHPHQLQHAHQPLHS 248


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,888,987
Number of Sequences: 219361
Number of extensions: 1319835
Number of successful extensions: 3993
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3971
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)