Clone Name | rbastl25h02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK120565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013133J10, full insert sequence Length = 3753 Score = 109 bits (55), Expect = 7e-21 Identities = 112/131 (85%) Strand = Plus / Minus Query: 235 catgggcaactcaaagcagacataattccagtaatcaactaacttgtgatcatcaggtac 294 |||||||||||| || || ||||| |||||||||||||||||||| || || ||||||| Sbjct: 1293 catgggcaactcgaaacaaacatatttccagtaatcaactaacttatggtctgcaggtac 1234 Query: 295 cacctccctcgccctacccgcacaaaatattacataagcatcagctgcatacttaccgac 354 |||||| | ||||| |||||||| || ||| |||||||||||||||| ||||| || || Sbjct: 1233 cacctctgttgccctgcccgcacagaagattgcataagcatcagctgcgtacttgccaac 1174 Query: 355 gccacaaagct 365 |||||||||| Sbjct: 1173 accacaaagct 1163
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 95.6 bits (48), Expect = 1e-16 Identities = 93/108 (86%) Strand = Plus / Plus Query: 235 catgggcaactcaaagcagacataattccagtaatcaactaacttgtgatcatcaggtac 294 |||||||||||| || || ||||| |||||||||||||||||||| || || ||||||| Sbjct: 193665 catgggcaactcgaaacaaacatatttccagtaatcaactaacttatggtctgcaggtac 193724 Query: 295 cacctccctcgccctacccgcacaaaatattacataagcatcagctgc 342 |||||| | ||||| |||||||| || ||| |||||||||||||||| Sbjct: 193725 cacctctgttgccctgcccgcacagaagattgcataagcatcagctgc 193772
>dbj|AP006058.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16 Length = 190143 Score = 95.6 bits (48), Expect = 1e-16 Identities = 93/108 (86%) Strand = Plus / Plus Query: 235 catgggcaactcaaagcagacataattccagtaatcaactaacttgtgatcatcaggtac 294 |||||||||||| || || ||||| |||||||||||||||||||| || || ||||||| Sbjct: 89163 catgggcaactcgaaacaaacatatttccagtaatcaactaacttatggtctgcaggtac 89222 Query: 295 cacctccctcgccctacccgcacaaaatattacataagcatcagctgc 342 |||||| | ||||| |||||||| || ||| |||||||||||||||| Sbjct: 89223 cacctctgttgccctgcccgcacagaagattgcataagcatcagctgc 89270
>emb|AL445198.13| Human DNA sequence from clone RP11-288F8 on chromosome 1 Contains part of the NFIA gene for nuclear factor I/A, complete sequence Length = 78404 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 203 atactggaactgaactaatcca 224 |||||||||||||||||||||| Sbjct: 78037 atactggaactgaactaatcca 78058
>gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, complete sequence Length = 215326 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 355 gccacaaagctgcgtaacatgggtc 379 |||||||||||||||||| |||||| Sbjct: 38871 gccacaaagctgcgtaacgtgggtc 38895
>ref|XM_817662.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.2130) partial mRNA Length = 1233 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 aaaatattacataagcatcag 338 ||||||||||||||||||||| Sbjct: 265 aaaatattacataagcatcag 245
>gb|AC158627.6| Mus musculus 10 BAC RP23-451N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183225 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 catccatcaactgtcttttgt 41 ||||||||||||||||||||| Sbjct: 63558 catccatcaactgtcttttgt 63538
>dbj|AB111859.1| Trypanosoma brucei brucei TTA2 gene for GPI transamidase component TTA2, complete cds Length = 1233 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 aaaatattacataagcatcag 338 ||||||||||||||||||||| Sbjct: 265 aaaatattacataagcatcag 245
>gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, complete sequence Length = 167135 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 355 gccacaaagctgcgtaacatgggtc 379 |||||||||||||||||| |||||| Sbjct: 114741 gccacaaagctgcgtaacgtgggtc 114765
>gb|AC153365.7| Mus musculus 10 BAC RP23-273K11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207891 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 aatatcatctcaagcttaaca 67 ||||||||||||||||||||| Sbjct: 111727 aatatcatctcaagcttaaca 111747
>gb|AC153540.4| Mus musculus 10 BAC RP23-356N9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198205 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 catccatcaactgtcttttgt 41 ||||||||||||||||||||| Sbjct: 71447 catccatcaactgtcttttgt 71467
>ref|XM_493771.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2096 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttacataagcatcagctgca 343 |||||||||||||||||||| Sbjct: 702 ttacataagcatcagctgca 721
>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland Research Institute) complete sequence Length = 230137 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ccacagctgcttccccttgc 188 |||||||||||||||||||| Sbjct: 60236 ccacagctgcttccccttgc 60255
>gb|AC128571.4| Rattus norvegicus 6 BAC CH230-424O13 (Children's Hospital Oakland Research Institute) complete sequence Length = 194127 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gggtccattcatttccaaca 394 |||||||||||||||||||| Sbjct: 40690 gggtccattcatttccaaca 40709
>emb|AL160168.11| Human DNA sequence from clone RP11-394O9 on chromosome 9, complete sequence Length = 151202 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gctgcttccccttgcacttc 193 |||||||||||||||||||| Sbjct: 102368 gctgcttccccttgcacttc 102387
>gb|AC101846.8| Mus musculus chromosome 5, clone RP23-258M22, complete sequence Length = 179892 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 ctcaaagcagacataattccagta 267 ||||||||||||| |||||||||| Sbjct: 68242 ctcaaagcagacaaaattccagta 68265
>gb|AC112184.2| Homo sapiens chromosome 5 clone RP11-168A11, complete sequence Length = 173346 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tactgcttggacaatttctt 414 |||||||||||||||||||| Sbjct: 123643 tactgcttggacaatttctt 123624
>gb|AC012636.5|AC012636 Homo sapiens chromosome 5 clone CTD-2201I18, complete sequence Length = 175561 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tactgcttggacaatttctt 414 |||||||||||||||||||| Sbjct: 42519 tactgcttggacaatttctt 42500
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttacataagcatcagctgca 343 |||||||||||||||||||| Sbjct: 3137229 ttacataagcatcagctgca 3137210
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 ccatccaggactgcatggcgccgc 165 ||||||||||||| |||||||||| Sbjct: 834883 ccatccaggactggatggcgccgc 834860
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttacataagcatcagctgca 343 |||||||||||||||||||| Sbjct: 81017 ttacataagcatcagctgca 80998
>dbj|AK069905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034H21, full insert sequence Length = 2096 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttacataagcatcagctgca 343 |||||||||||||||||||| Sbjct: 702 ttacataagcatcagctgca 721
>emb|BX088554.8| Zebrafish DNA sequence from clone DKEYP-4F12 in linkage group 20, complete sequence Length = 160766 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttttgtcaggtaatatcatc 55 |||||||||||||||||||| Sbjct: 132923 ttttgtcaggtaatatcatc 132942
>emb|AL669976.11| Mouse DNA sequence from clone RP23-15J3 on chromosome X, complete sequence Length = 227762 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tcaaagcagacataattcca 264 |||||||||||||||||||| Sbjct: 127415 tcaaagcagacataattcca 127434
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttacataagcatcagctgca 343 |||||||||||||||||||| Sbjct: 105269 ttacataagcatcagctgca 105250 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,759,338 Number of Sequences: 3902068 Number of extensions: 3759338 Number of successful extensions: 68230 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68133 Number of HSP's gapped (non-prelim): 97 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)