ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Recei... 30 2.4
2LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like ... 30 3.2
3SYG_TREPA (O83678) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine... 29 5.4

>ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Receiver-like|
           protein 5)
          Length = 664

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 85  HISFNSFQ*VGYNSNLPTSSTPIASPKGILGRNFDILPVA-SYRSGFTCQDESYF*NNKI 261
           H  FN+F      ++LP SS P+AS  GI       +PV+ SY+      D     +   
Sbjct: 453 HSVFNNFP-----ADLPRSSFPLASAPGI------SVPVSVSYQEEVNSSDAKGGSSAAT 501

Query: 262 GDTGNPNLQLFNEHTPIVPQNRQN 333
              GNP+  +FN+     PQ++Q+
Sbjct: 502 AGFGNPSYDIFND----FPQHQQH 521



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>LAX3_ARATH (Q9CA25) Auxin transporter-like protein 3 (AUX1-like protein 3)|
          Length = 470

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 80  TSTKLGNLFWGGGNMYFSSFKEYSN 6
           T TKL N FW GG++Y + F   SN
Sbjct: 32  TKTKLSNFFWHGGSVYDAWFSCASN 56



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>SYG_TREPA (O83678) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 462

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 180 PSEDAFWARYWCGRGW 133
           P+ED  W  YWC + W
Sbjct: 201 PAEDTHWFEYWCAQRW 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,505,562
Number of Sequences: 219361
Number of extensions: 1485765
Number of successful extensions: 2812
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2812
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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