ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl25g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 343 2e-91
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 174 1e-40
3gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 96 1e-16
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 6e-15
5emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 90 6e-15
6gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 90 6e-15
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
8dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
9ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 84 4e-13
10gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 78 2e-11
11gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRN... 76 9e-11
12gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence 72 1e-09
13gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 ge... 72 1e-09
14gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 ge... 72 1e-09
15gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 ge... 72 1e-09
16gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 ge... 72 1e-09
17gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 ge... 72 1e-09
18gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 ge... 72 1e-09
19gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 ge... 72 1e-09
20gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 ge... 72 1e-09
21gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 ge... 72 1e-09
22gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 ge... 72 1e-09
23gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 ge... 72 1e-09
24gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 ge... 72 1e-09
25gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 ge... 72 1e-09
26gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 geno... 72 1e-09
27gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, co... 62 1e-06
28ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA 60 5e-06
29ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA 60 5e-06
30gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 60 5e-06
31gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual posit... 60 5e-06
32dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
33dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
34dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
35dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
36gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complet... 56 8e-05
37ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
38gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 54 3e-04
39gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 48 0.020
40ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.080
41gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.080
42dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.080
43dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.080
44dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.080
45dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.080
46dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.080
47gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA,... 46 0.080
48gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA,... 46 0.080
49dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2... 46 0.080
50ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.32
51dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
52dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
53dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
54dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.32
55gb|AY111869.1| Zea mays CL452_-8 mRNA sequence 44 0.32
56gb|AY103567.1| Zea mays PCO116252 mRNA sequence 44 0.32
57emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 1.3
58emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 1.3
59gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 1.3
60ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.0
61gb|AY110522.1| Zea mays CL4677_2 mRNA sequence 40 5.0
62gb|AY104322.1| Zea mays PCO093659 mRNA sequence 40 5.0 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  343 bits (173), Expect = 2e-91
 Identities = 181/184 (98%)
 Strand = Plus / Minus

                                                                        
Query: 189  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 248
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                                        
Query: 249  gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608

                                                                        
Query: 309  tcccgtgtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggt 368
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2607 tcccgtgtggtcggaggtgtttgggtagagcagcatgtatgggaacttggccggcccggt 2548

                
Query: 369  gcgg 372
            ||||
Sbjct: 2547 gcgg 2544



 Score =  246 bits (124), Expect = 4e-62
 Identities = 146/153 (95%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 24   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 84   agctgagctgagcttccgcacgccgatcaaacccgtcgtgcacgcaccc----ttattgc 139
            |||||||||||||||||||| |||||||| |||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 140  cttaattattcatgcaccggcacaactccctgt 172
            |||||||||||||||||||||||||||| ||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744
to top
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score =  174 bits (88), Expect = 1e-40
 Identities = 108/115 (93%)
 Strand = Plus / Minus

                                                                       
Query: 258 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 317
           ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 906 tcagatggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtg 847

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 846 gtcggaggtgttggggtagagcagcatgtaggggaacttggccggcccggtgcgg 792



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 17   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 66
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050
to top
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                       
Query: 258 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 317
           ||||||||| |||||||| ||||||||| | |||||||||||  ||||    ||| ||||
Sbjct: 753 tcagatggagatgctgttggggatgcccttagcggtgagcccggcggcggcgcccttgtg 694

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
            ||||||||||| |||||||||| |||||| |||||||||||||| ||| |||||
Sbjct: 693 atcggaggtgttggggtagagcaacatgtaggggaacttggccggaccgttgcgg 639
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                            
Query: 255      agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 314
                |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 30026452 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 30026393

                                                                    
Query: 315      gtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 366
                | |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 30026392 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 30026341



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 258      tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
                ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27821686 tcagatggagatgctgttggggatgcccatggcggtgagccc 27821645



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 318      gtcggaggtgtttgggtagagcancatgtatgggaact 355
                |||||||||||| ||||| |||| ||||||||||||||
Sbjct: 27803047 gtcggaggtgttggggtaaagcagcatgtatgggaact 27803010
to top
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                        
Query: 255  agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 314
            |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 2698 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 2639

                                                                
Query: 315  gtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 366
            | |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 2638 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 2587
to top
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                         
Query: 255   agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 314
             |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 81299 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 81358

                                                                 
Query: 315   gtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 366
             | |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 81359 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 81410
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                            
Query: 255      agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 314
                |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 30117874 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 30117815

                                                                    
Query: 315      gtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 366
                | |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 30117814 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 30117763



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 258      tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
                ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27913010 tcagatggagatgctgttggggatgcccatggcggtgagccc 27912969



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 318      gtcggaggtgtttgggtagagcancatgtatgggaact 355
                |||||||||||| ||||| |||| ||||||||||||||
Sbjct: 27894371 gtcggaggtgttggggtaaagcagcatgtatgggaact 27894334
to top
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 95/112 (84%)
 Strand = Plus / Minus

                                                                        
Query: 255  agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 314
            |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 2731 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 2672

                                                                
Query: 315  gtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 366
            | |||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 2671 gaggtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 2620
to top
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                        
Query: 258  tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 317
            ||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || |
Sbjct: 2613 tcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgag 2554

                                                             
Query: 318  gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccg 366
            ||||||||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 2553 gtcggaggtgtttgggtagagcagcgtgtaggggaaattggtcggcccg 2505
to top
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                        
Query: 255  agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 314
            |||| ||||||| |||||||| ||||||||| ||||||| |||||  | ||    ||| |
Sbjct: 2660 agattagatggagatgctgttggggatgcccttggcggtaagcccggcagcggcgccctt 2601

                                                                      
Query: 315  gtggtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
            ||||||||||||||| |||||||||| |||||| || ||||| ||||| ||| |||||
Sbjct: 2600 gtggtcggaggtgttggggtagagcagcatgtagggaaacttagccgggccgttgcgg 2543
to top
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds
          Length = 1331

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 94/113 (83%)
 Strand = Plus / Minus

                                                                        
Query: 260  agatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggt 319
            ||||||| |||||||| ||||||||| ||||||| |||||  | ||    ||| ||||||
Sbjct: 1084 agatggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggt 1025

                                                                 
Query: 320  cggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
            |||||||||| |||||||||| |||||| || ||||| ||||| ||| |||||
Sbjct: 1024 cggaggtgttggggtagagcagcatgtagggaaacttagccgggccgttgcgg 972
to top
>gb|DQ428248.1| Sorghum propinquum locus PRC0271 genomic sequence
          Length = 810

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 736 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 682
to top
>gb|DQ428247.1| Sorghum bicolor voucher PI585454 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428246.1| Sorghum bicolor voucher PI267539 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428245.1| Sorghum bicolor voucher PI267408 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428244.1| Sorghum bicolor voucher PI221607 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428243.1| Sorghum bicolor voucher PI152702 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428242.1| Sorghum bicolor voucher NSL92371 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428241.1| Sorghum bicolor voucher NSL87902 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428240.1| Sorghum bicolor voucher NSL87666 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428239.1| Sorghum bicolor voucher NSL77217 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428238.1| Sorghum bicolor voucher NSL77034 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428237.1| Sorghum bicolor voucher NSL55243 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428236.1| Sorghum bicolor voucher NSL51365 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428235.1| Sorghum bicolor voucher NSL51030 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|DQ428234.1| Sorghum bicolor voucher BTx623 locus PRC0271 genomic sequence
          Length = 805

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 318 gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
           |||||||||||| |||||||||| | |||| |||||||||||||||||| |||||
Sbjct: 731 gtcggaggtgttggggtagagcagcgtgtaggggaacttggccggcccgttgcgg 677
to top
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 250  tgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccc 300
            ||||||| ||||||||| | |||||| ||||||||| ||||||||||||||
Sbjct: 2772 tgctcagctcagatggagacgctgttggggatgcccatggcggtgagcccc 2722
to top
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2686

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 258  tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2446 tcagatggagatgctgttggggatgcccatggcggtgagccc 2405
to top
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3165

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 258  tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2925 tcagatggagatgctgttggggatgcccatggcggtgagccc 2884
to top
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 258   tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
             ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 65816 tcagatggagatgctgttggggatgcccatggcggtgagccc 65775



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 318   gtcggaggtgtttgggtagagcancatgtatgggaact 355
             |||||||||||| ||||| |||| ||||||||||||||
Sbjct: 47177 gtcggaggtgttggggtaaagcagcatgtatgggaact 47140
to top
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity
            lipoxygenase mRNA, complete cds
          Length = 3154

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 258  tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2919 tcagatggagatgctgttggggatgcccatggcggtgagccc 2878
to top
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full
            insert sequence
          Length = 1560

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 258  tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1332 tcagatggagatgctgttggggatgcccatggcggtgagccc 1291
to top
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full
            insert sequence
          Length = 2851

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 258  tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2597 tcagatggagatgctgttggggatgcccatggcggtgagccc 2556
to top
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full
            insert sequence
          Length = 3167

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 258  tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2927 tcagatggagatgctgttggggatgcccatggcggtgagccc 2886
to top
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full
            insert sequence
          Length = 1726

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 258  tcagatggatatgctgttcgggatgcccctggcggtgagccc 299
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1497 tcagatggagatgctgttggggatgcccatggcggtgagccc 1456
to top
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds
          Length = 2845

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 318  gtcggaggtgtttgggtagagcancatgtatgggaacttggccggcccggtgcgg 372
            |||||||||||| |||||||||| | |||| ||||||| |||||| ||| |||||
Sbjct: 2562 gtcggaggtgttggggtagagcagcgtgtaggggaactcggccgggccgttgcgg 2508
to top
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2601

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 318  gtcggaggtgtttgggtagagcancatgtatgggaact 355
            |||||||||||| ||||| |||| ||||||||||||||
Sbjct: 2541 gtcggaggtgttggggtaaagcagcatgtatgggaact 2504
to top
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 318   gtcggaggtgtttgggtagagcancatgtatgggaact 355
             |||||||||||| ||||| |||| ||||||||||||||
Sbjct: 10846 gtcggaggtgttggggtaaagcagcatgtatgggaact 10883
to top
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 256  gatcagatggatatgctgttcgggatgcccctggcggtga 295
            ||||||||||| |||||||| ||||||||| |||| ||||
Sbjct: 1558 gatcagatggagatgctgttggggatgcccttggctgtga 1519
to top
>ref|XM_483279.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3198

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 257  atcagatggatatgctgttcgggatgcccctggcggtga 295
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2978 atcagatggatgtgctgttggggatgcccatgccggtga 2940
to top
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 131    ccttattgccttaattattcatg 153
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 131   ccttattgccttaattattcatg 153
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 257      atcagatggatatgctgttcgggatgcccctggcggtga 295
                ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 25242576 atcagatggatgtgctgttggggatgcccatgccggtga 25242538



 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 257      atcagatggatatgctgttcgggatgcccctggcggtga 295
                ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 25209453 atcagatggatgtgctgttggggatgcccatgccggtga 25209491
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 131      ccttattgccttaattattcatg 153
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 131      ccttattgccttaattattcatg 153
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
to top
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1168A08
          Length = 138135

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 257    atcagatggatatgctgttcgggatgcccctggcggtga 295
              ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 107699 atcagatggatgtgctgttggggatgcccatgccggtga 107661



 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 257   atcagatggatatgctgttcgggatgcccctggcggtga 295
             ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 74576 atcagatggatgtgctgttggggatgcccatgccggtga 74614
to top
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016N23
          Length = 147336

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 257   atcagatggatatgctgttcgggatgcccctggcggtga 295
             ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 17761 atcagatggatgtgctgttggggatgcccatgccggtga 17723
to top
>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full
            insert sequence
          Length = 3196

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 257  atcagatggatatgctgttcgggatgcccctggcggtga 295
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2976 atcagatggatgtgctgttggggatgcccatgccggtga 2938
to top
>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds
          Length = 2232

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 257  atcagatggatatgctgttcgggatgcccctggcggtga 295
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2053 atcagatggatgtgctgttggggatgcccatgccggtga 2015
to top
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds
          Length = 2664

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 257  atcagatggatatgctgttcgggatgcccctggcggtga 295
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2461 atcagatggatgtgctgttggggatgcccatgccggtga 2423
to top
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for
            lipoxygenase, complete cds
          Length = 3007

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 257  atcagatggatatgctgttcgggatgcccctggcggtga 295
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2891 atcagatggatgtgctgttggggatgcccatgccggtga 2853
to top
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 258  tcagatggatatgctgttcgggatgcccct 287
            ||||||||| |||||||| |||||||||||
Sbjct: 2881 tcagatggagatgctgtttgggatgcccct 2852
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 258     tcagatggatatgctgttcgggatgcccct 287
               ||||||||| |||||||| |||||||||||
Sbjct: 5276963 tcagatggagatgctgtttgggatgcccct 5276992
to top
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 258  tcagatggatatgctgttcgggatgcccct 287
            ||||||||| |||||||| |||||||||||
Sbjct: 3266 tcagatggagatgctgtttgggatgcccct 3295
to top
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
            insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 258  tcagatggatatgctgttcgggatgcccct 287
            ||||||||| |||||||| |||||||||||
Sbjct: 2880 tcagatggagatgctgtttgggatgcccct 2851
to top
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full
            insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 258  tcagatggatatgctgttcgggatgcccct 287
            ||||||||| |||||||| |||||||||||
Sbjct: 2042 tcagatggagatgctgtttgggatgcccct 2013
to top
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence
          Length = 568

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 262 atggatatgctgttcgggatgcccctggcggtgagcccctcg 303
           ||||| |||||||| || |||||| |||| ||||||||||||
Sbjct: 363 atggagatgctgttgggaatgcccatggcagtgagcccctcg 322
to top
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence
          Length = 3135

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 262  atggatatgctgttcgggatgcccctggcggtgagcccctcggcct 307
            ||||| |||||||| || |||||| |||| || |||||||||||||
Sbjct: 2896 atggagatgctgttgggaatgcccatggcagtaagcccctcggcct 2851
to top
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    aaacaagggattttttctgca 58
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
to top
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    gcaaaacaagggattttttct 55
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
to top
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 88      gagctgagcttccgcacgccgatca 112
               |||||| ||||||||||||||||||
Sbjct: 1435413 gagctgggcttccgcacgccgatca 1435389
to top
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    ggagggaacatcacaccatc 20
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438
to top
>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 256 gatcagatggatatgctgttcgggatgcccct 287
           ||||||||||| |||||| | |||||||||||
Sbjct: 132 gatcagatggagatgctgctggggatgcccct 163
to top
>gb|AY104322.1| Zea mays PCO093659 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 256  gatcagatggatatgctgttcgggatgcccct 287
            ||||||||||| |||||| | |||||||||||
Sbjct: 1216 gatcagatggagatgctgctggggatgcccct 1185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,123,904
Number of Sequences: 3902068
Number of extensions: 2123904
Number of successful extensions: 41410
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41221
Number of HSP's gapped (non-prelim): 187
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top