No.
Definition
Score (bits)
E Value
1 ref|XM_467690.1| Oryza sativa (japonica cultivar-group), mRNA
78
3e-11
2 gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
78
3e-11
3 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
78
3e-11
4 dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D...
78
3e-11
5 dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clon...
78
3e-11
6 gb|AY103745.1| Zea mays PCO097601 mRNA sequence
70
7e-09
7 gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
62
2e-06
8 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
54
4e-04
9 dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D...
54
4e-04
10 dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clon...
46
0.097
11 ref|NM_106101.2| Arabidopsis thaliana protein binding / ubiquiti...
44
0.38
12 ref|NM_106102.3| Arabidopsis thaliana FUT3; fucosyltransferase/ ...
44
0.38
13 gb|AY050433.1| Arabidopsis thaliana At1g74410/F1M20_9 mRNA, comp...
44
0.38
14 gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M...
44
0.38
15 gb|AY087335.1| Arabidopsis thaliana clone 34363 mRNA, complete s...
44
0.38
16 emb|CR854834.11| Zebrafish DNA sequence from clone DKEYP-92B10 i...
42
1.5
17 ref|XM_763163.1| Giardia lamblia ATCC 50803 hypothetical protein...
42
1.5
18 emb|BX649469.8| Zebrafish DNA sequence from clone DKEY-273O8 in ...
42
1.5
19 gb|M86396.1|SCMEGFRA Schistosoma mansoni epidermal growth factor...
42
1.5
20 gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, com...
40
6.0
21 ref|XM_984295.1| PREDICTED: Mus musculus desmoglein 3 (Dsg3), mRNA
40
6.0
22 gb|AF131215.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-...
40
6.0
23 gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome
40
6.0
24 ref|NM_030596.1| Mus musculus desmoglein 3 (Dsg3), mRNA
40
6.0
25 emb|AL627313.16| Human DNA sequence from clone RP11-492M19 on ch...
40
6.0
26 gb|AC105108.4| Homo sapiens chromosome 8, clone CTD2-3179G6, com...
40
6.0
27 gb|AF403184.1| Desulfitobacterium hafniense clone 3277 putative ...
40
6.0
28 dbj|AK148657.1| Mus musculus 2 days neonate sympathetic ganglion...
40
6.0
29 dbj|AK029018.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu...
40
6.0
30 gb|U86016.1|MMU86016 Mus musculus desmoglein 3 (DSG3) mRNA, part...
40
6.0
31 dbj|AK037142.1| Mus musculus adult female vagina cDNA, RIKEN ful...
40
6.0
32 gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y,...
40
6.0
33 gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y...
40
6.0
34 gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y...
40
6.0
35 gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y,...
40
6.0
36 ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P...
40
6.0
37 gb|AC156624.1| Ornithorhynchus anatinus clone OA_Bb-193E18, comp...
40
6.0
38 gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, compl...
40
6.0
39 gb|U36616.1|HSYRRMC01 Human Y-chromosome RNA recognition motif p...
40
6.0
40 gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome...
40
6.0
41 gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosom...
40
6.0
>ref|XM_467690.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 3215
Score = 77.8 bits (39), Expect = 3e-11
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 322 ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 381
||||| |||||||| || |||||||||||||||||||| || || ||||||| |||||
Sbjct: 2837 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 2778
Query: 382 ccattttcataccgccggccccgactgtcagcacttctcgatcttgactcgttctgtgaa 441
||||||||||| || ||| || |||||||||||||| || |||| || || ||||||
Sbjct: 2777 ccattttcatagcgtttgccacggctgtcagcacttcttgaccttgtttcattgtgtgaa 2718
Query: 442 ctg 444
|||
Sbjct: 2717 ctg 2715
Score = 73.8 bits (37), Expect = 4e-10
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 151 atatttctataaacaactgaggtcctctggatacacaccactcatgc-gatctctcgcca 209
|||||||||| |||||||||| |||||||||||||||||| |||||| |||||||| ||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 2978
Query: 210 gctct 214
|||||
Sbjct: 2977 gctct 2973
Score = 52.0 bits (26), Expect = 0.002
Identities = 85/105 (80%), Gaps = 6/105 (5%)
Strand = Plus / Minus
Query: 26 ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 79
|||||||| |||||| || |||||||||||| ||| ||||| |||||||| | |
Sbjct: 3171 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 3112
Query: 80 acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 124
|||||| ||| |||| |||||| ||||||||| |||||||||||
Sbjct: 3111 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 3067
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 77.8 bits (39), Expect = 3e-11
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 322 ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 381
||||| |||||||| || |||||||||||||||||||| || || ||||||| |||||
Sbjct: 30880546 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 30880605
Query: 382 ccattttcataccgccggccccgactgtcagcacttctcgatcttgactcgttctgtgaa 441
||||||||||| || ||| || |||||||||||||| || |||| || || ||||||
Sbjct: 30880606 ccattttcatagcgtttgccacggctgtcagcacttcttgaccttgtttcattgtgtgaa 30880665
Query: 442 ctg 444
|||
Sbjct: 30880666 ctg 30880668
Score = 73.8 bits (37), Expect = 4e-10
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 151 atatttctataaacaactgaggtcctctggatacacaccactcatgc-gatctctcgcca 209
|||||||||| |||||||||| |||||||||||||||||| |||||| |||||||| ||
Sbjct: 30880346 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 30880405
Query: 210 gctct 214
|||||
Sbjct: 30880406 gctct 30880410
Score = 52.0 bits (26), Expect = 0.002
Identities = 85/105 (80%), Gaps = 6/105 (5%)
Strand = Plus / Plus
Query: 26 ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 79
|||||||| |||||| || |||||||||||| ||| ||||| |||||||| | |
Sbjct: 30880212 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 30880271
Query: 80 acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 124
|||||| ||| |||| |||||| ||||||||| |||||||||||
Sbjct: 30880272 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 30880316
>dbj|AP005112.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0684F11
Length = 147731
Score = 77.8 bits (39), Expect = 3e-11
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 322 ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 381
||||| |||||||| || |||||||||||||||||||| || || ||||||| |||||
Sbjct: 64123 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 64182
Query: 382 ccattttcataccgccggccccgactgtcagcacttctcgatcttgactcgttctgtgaa 441
||||||||||| || ||| || |||||||||||||| || |||| || || ||||||
Sbjct: 64183 ccattttcatagcgtttgccacggctgtcagcacttcttgaccttgtttcattgtgtgaa 64242
Query: 442 ctg 444
|||
Sbjct: 64243 ctg 64245
Score = 73.8 bits (37), Expect = 4e-10
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 151 atatttctataaacaactgaggtcctctggatacacaccactcatgc-gatctctcgcca 209
|||||||||| |||||||||| |||||||||||||||||| |||||| |||||||| ||
Sbjct: 63923 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 63982
Query: 210 gctct 214
|||||
Sbjct: 63983 gctct 63987
Score = 52.0 bits (26), Expect = 0.002
Identities = 85/105 (80%), Gaps = 6/105 (5%)
Strand = Plus / Plus
Query: 26 ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 79
|||||||| |||||| || |||||||||||| ||| ||||| |||||||| | |
Sbjct: 63789 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 63848
Query: 80 acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 124
|||||| ||| |||| |||||| ||||||||| |||||||||||
Sbjct: 63849 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 63893
>dbj|AK099699.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full
insert sequence
Length = 3215
Score = 77.8 bits (39), Expect = 3e-11
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 322 ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 381
||||| |||||||| || |||||||||||||||||||| || || ||||||| |||||
Sbjct: 2837 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 2778
Query: 382 ccattttcataccgccggccccgactgtcagcacttctcgatcttgactcgttctgtgaa 441
||||||||||| || ||| || |||||||||||||| || |||| || || ||||||
Sbjct: 2777 ccattttcatagcgtttgccacggctgtcagcacttcttgaccttgtttcattgtgtgaa 2718
Query: 442 ctg 444
|||
Sbjct: 2717 ctg 2715
Score = 73.8 bits (37), Expect = 4e-10
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 151 atatttctataaacaactgaggtcctctggatacacaccactcatgc-gatctctcgcca 209
|||||||||| |||||||||| |||||||||||||||||| |||||| |||||||| ||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 2978
Query: 210 gctct 214
|||||
Sbjct: 2977 gctct 2973
Score = 52.0 bits (26), Expect = 0.002
Identities = 85/105 (80%), Gaps = 6/105 (5%)
Strand = Plus / Minus
Query: 26 ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 79
|||||||| |||||| || |||||||||||| ||| ||||| |||||||| | |
Sbjct: 3171 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 3112
Query: 80 acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 124
|||||| ||| |||| |||||| ||||||||| |||||||||||
Sbjct: 3111 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 3067
>emb|AL627313.16 | Human DNA sequence from clone RP11-492M19 on chromosome 1 Contains a
novel pseudogene (LOC151871), a novel gene similar to
ribosomal protein S6 kinase, 90kDa, polypeptide 1
(RPS6KA1), a chromosome 20 open reading frame 52 (C20orf52)
pseudogene and two CpG islands, complete sequence
Length = 128342
Score = 40.1 bits (20), Expect = 6.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 262 agagcatgccatgaaaaata 281
||||||||||||||||||||
Sbjct: 119310 agagcatgccatgaaaaata 119291
>gb|AF403184.1 | Desulfitobacterium hafniense clone 3277 putative uroporphyrinogen
III synthase/methyltransferase, membrane docking
protein, reductive dehalogenase, putative membrane
docking protein, putative reductive dehalogenase,
putative transcription regulator, putative GroEL-type
chaperonin, putative membrane-bound regulatory protein,
and putative GroEL-type chaperonin genes, complete cds;
and unknown genes
Length = 27716
Score = 40.1 bits (20), Expect = 6.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 253 aagggagtgagagcatgcca 272
||||||||||||||||||||
Sbjct: 684 aagggagtgagagcatgcca 703
>ref|NG_004755.1 | Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
(P1-P2-P3-IR2@) on chromosome Y
Length = 4538292
Score = 40.1 bits (20), Expect = 6.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 137 catacataacctacatattt 156
||||||||||||||||||||
Sbjct: 4313000 catacataacctacatattt 4312981
Score = 40.1 bits (20), Expect = 6.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 137 catacataacctacatattt 156
||||||||||||||||||||
Sbjct: 1735844 catacataacctacatattt 1735863
Score = 40.1 bits (20), Expect = 6.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 137 catacataacctacatattt 156
||||||||||||||||||||
Sbjct: 838571 catacataacctacatattt 838552
Score = 40.1 bits (20), Expect = 6.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 137 catacataacctacatattt 156
||||||||||||||||||||
Sbjct: 126052 catacataacctacatattt 126071
>gb|AC168066.4 | Mus musculus BAC clone RP23-134F19 from chromosome 16, complete
sequence
Length = 198238
Score = 40.1 bits (20), Expect = 6.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 tggcaacaaaatctcacagg 84
||||||||||||||||||||
Sbjct: 82449 tggcaacaaaatctcacagg 82468
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,895,936
Number of Sequences: 3902068
Number of extensions: 3895936
Number of successful extensions: 78583
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78407
Number of HSP's gapped (non-prelim): 176
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)