ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl25g04 |
|---|---|
| Clone Library Name | barley_pub |
>ARGC_RHILO (Q982X3) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 308 Score = 29.3 bits (64), Expect = 2.5 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Frame = +3 Query: 93 VPTDYIMIIRAKLLQKRVRGWP-------KERTKRLLLQPTIRIP-CLPEGPIQRTRPKR 248 + D +I A + GW KE+ K + + P C P+GPI RP Sbjct: 70 ITNDTTKVIDASTAHRVAEGWAYGFAEMDKEQAKAIATAKRVANPGCWPQGPIATLRPLV 129 Query: 249 TNHLNFGFFKGSPPLEPPRSGGGRNLL 329 T+ L F + SGGGR ++ Sbjct: 130 TSGLLPADFPITVNGISGYSGGGRPMI 156
>BXCN_CLOBO (P46081) Botulinum neurotoxin type C1, nontoxic component| Length = 1196 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 6/36 (16%) Frame = +1 Query: 139 NEYGDGLKSEQNDFC------YNQPYEYHASRKGRF 228 N YGDGLK DF YN+ YEY + F Sbjct: 417 NIYGDGLKGTTEDFYSTYKIPYNEEYEYRFNDSDNF 452
>VP19_CRV (P17457) RNA silencing suppressor (19 kDa symptom severity| modulator) (Core protein p19) Length = 172 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +3 Query: 165 RTKRLLLQPTIRIPCLPEGPIQRTRPKRT 251 RTKR +LQPT P EG + R RP+ T Sbjct: 139 RTKRTMLQPT---PSEREGNVSRRRPEGT 164
>NPRE_PAEPO (P29148) Bacillolysin precursor (EC 3.4.24.28) (Neutral protease)| Length = 590 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 130 YCKNEYGDGLKSEQNDFCYNQPYEYHASRKG 222 Y N GD L+S N Y+QP+ Y KG Sbjct: 469 YTPNICGDALRSMSNPTLYDQPHHYSNLYKG 499
>PRA11_HUMAN (O60813) PRAME family member 11 (Fragment)| Length = 435 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +3 Query: 120 RAKLLQKRVRGWPKERTKRLLLQPTIRIPCL 212 R + L+ V+ WP +RL L+P I++PCL Sbjct: 8 RCEALKLMVQAWP---FRRLPLRPLIKMPCL 35
>ST17B_MOUSE (Q8BG48) Serine/threonine-protein kinase 17B (EC 2.7.11.1) (DAP| kinase-related apoptosis-inducing protein kinase 2) Length = 372 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -1 Query: 233 PLNRPFREAWYSYGWL*QKSFCSLFRPSPYS 141 P RP E+ S+ WL Q F SLF P S Sbjct: 278 PEKRPTAESCLSHSWLQQWDFGSLFHPEETS 308
>PRAM6_HUMAN (Q5VXH4) PRAME family member 6| Length = 476 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +3 Query: 120 RAKLLQKRVRGWPKERTKRLLLQPTIRIPCL 212 R + L+ V+ WP +RL L+P I++PCL Sbjct: 48 RCEALKLMVQAWP---FRRLPLRPLIKMPCL 75
>PRAM5_HUMAN (Q5TYX0) PRAME family member 5| Length = 476 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +3 Query: 120 RAKLLQKRVRGWPKERTKRLLLQPTIRIPCL 212 R + L+ V+ WP +RL L+P I++PCL Sbjct: 48 RCEALKLMVQAWP---FRRLPLRPLIKMPCL 75
>ST17B_RAT (Q91XS8) Serine/threonine-protein kinase 17B (EC 2.7.11.1) (DAP| kinase-related apoptosis-inducing protein kinase 2) Length = 371 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -1 Query: 233 PLNRPFREAWYSYGWL*QKSFCSLFRPSPYS 141 P RP E+ S+ WL Q F SLF P S Sbjct: 278 PEKRPTAESCLSHSWLQQWDFGSLFHPEETS 308
>PRAM9_HUMAN (Q5VWM5) PRAME family member 9| Length = 478 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +3 Query: 120 RAKLLQKRVRGWPKERTKRLLLQPTIRIPCL 212 R + L+ V+ WP +RL L+P I++PCL Sbjct: 50 RCEALKLMVQAWP---FRRLPLRPLIKMPCL 77
>PRAM4_HUMAN (O60810) PRAME family member 4| Length = 478 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +3 Query: 120 RAKLLQKRVRGWPKERTKRLLLQPTIRIPCL 212 R + L+ V+ WP +RL L+P I++PCL Sbjct: 50 RCEALKLMVQSWP---FRRLPLRPLIKMPCL 77
>OPT7_ARATH (O82485) Oligopeptide transporter 7 (AtOPT7)| Length = 766 Score = 27.7 bits (60), Expect = 7.4 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 15/64 (23%) Frame = -2 Query: 160 LGH-----PRTRFCSSFARIIII*SVGTLVSCYVMLL--------LPSVCGSLKTSF--C 26 LGH PRT F + VGTL+SC+V L +P++C S+ S C Sbjct: 549 LGHYMKIPPRTMFMAQI--------VGTLISCFVYLTTAWWLMETIPNICDSVTNSVWTC 600 Query: 25 LLDK 14 DK Sbjct: 601 PSDK 604
>SYNP2_MOUSE (Q91YE8) Synaptopodin-2 (Myopodin)| Length = 1087 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +2 Query: 212 PGRADSEDATKTNQSPELRLLQGQPPLGA 298 P +AD+ + T+ ELR++QG+ P GA Sbjct: 241 PEKADTSLTSSTSSGRELRVIQGRDPGGA 269
>HEM6_HORVU (Q42840) Coproporphyrinogen III oxidase, chloroplast precursor (EC| 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) Length = 391 Score = 27.7 bits (60), Expect = 7.4 Identities = 23/79 (29%), Positives = 27/79 (34%) Frame = -1 Query: 329 QQVSPAARPWWLQGGAALEEAEVQVIGSFWSRPLNRPFREAWYSYGWL*QKSFCSLFRPS 150 + V A R WW GG L S+ + F QK C F PS Sbjct: 205 KDVPGAPRSWWFGGGTDLTP-------SYLIEEDVKHFHSV--------QKQTCDKFDPS 249 Query: 149 PYSFLQ*LCSYYHYIVSRN 93 Y + C Y YI RN Sbjct: 250 FYPRFKKWCDDYFYIKHRN 268
>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P| Length = 361 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 120 RAKLLQKRVRGWPKERTKRLL 182 RAK + R+R WPKE R+L Sbjct: 19 RAKSIVPRIRSWPKETEVRML 39
>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P| Length = 365 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 120 RAKLLQKRVRGWPKERTKRLL 182 RAK + R+R WPKE R+L Sbjct: 19 RAKSIVPRIRSWPKETEVRML 39
>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated| protein of 350 kDa) Length = 3117 Score = 27.3 bits (59), Expect = 9.6 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Frame = +3 Query: 90 KVPTDYIMIIRAKLLQKRVRGWPKERTKRLLLQPTIRIPCLPEGPIQRTRP--KRTNHLN 263 K PT + K LQ V G ER+K ++ PTI P P+ P RT N Sbjct: 1252 KTPTSPLSPSSQKSLQFDVAGTSSERSKSSVMPPTI-TGFKPNAPLTDLNPAASRTTTEN 1310 Query: 264 FGFFKGSPPLEP 299 GS P Sbjct: 1311 MAPIPGSKRFSP 1322
>MSLN_HUMAN (Q13421) Mesothelin precursor (CAK1 antigen)| Length = 628 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 335 QRQQVSPAARPWWLQGGAALEEAEVQVIG 249 +RQ++ PAA W G+ L EA+V+ +G Sbjct: 156 ERQRLLPAALACWGVRGSLLSEADVRALG 184
>ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)| (Anaplastic lymphoma kinase) (CD246 antigen) Length = 1621 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/53 (28%), Positives = 26/53 (49%) Frame = +3 Query: 156 PKERTKRLLLQPTIRIPCLPEGPIQRTRPKRTNHLNFGFFKGSPPLEPPRSGG 314 P+ LLL+P+ + E P+ R R ++N+G+ + PLE + G Sbjct: 1554 PRRAEAALLLEPSALSATMKEVPLFRLRHFPCPNVNYGYQQQGLPLEATAAPG 1606
>RL3_PYRHO (O59418) 50S ribosomal protein L3P| Length = 362 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 120 RAKLLQKRVRGWPKERTKRLL 182 RAK + R+R WPKE R+L Sbjct: 19 RAKSIVPRIRSWPKETEVRML 39 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,360,440 Number of Sequences: 219361 Number of extensions: 935739 Number of successful extensions: 2492 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2446 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2490 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
