Clone Name | rbastl25g04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC102614.11| Mus musculus chromosome 8, clone RP23-421L10, complete sequence Length = 197194 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 gtaataataacataacataaca 82 |||||||||||||||||||||| Sbjct: 65465 gtaataataacataacataaca 65444
>gb|AC010168.6| Homo sapiens 12p12-31.7-32.2 BAC RP11-174G6 (Rosewell Park Cancer Institute Human Bac Library) complete sequence Length = 104926 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 19 ccaaaagacaaaaagaagtctt 40 |||||||||||||||||||||| Sbjct: 71077 ccaaaagacaaaaagaagtctt 71098
>gb|AC158511.2| Mus musculus BAC clone RP24-242G2 from chromosome 13, complete sequence Length = 143388 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 tttatccaaaagacaaaaagaa 35 |||||||||||||||||||||| Sbjct: 88102 tttatccaaaagacaaaaagaa 88081
>emb|CT030664.5| Mouse DNA sequence from clone RP23-357K7 on chromosome 13, complete sequence Length = 192064 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 tttatccaaaagacaaaaagaa 35 |||||||||||||||||||||| Sbjct: 146773 tttatccaaaagacaaaaagaa 146752
>gb|AC124737.5| Mus musculus BAC clone RP23-330K22 from 13, complete sequence Length = 188023 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 tttatccaaaagacaaaaagaa 35 |||||||||||||||||||||| Sbjct: 181426 tttatccaaaagacaaaaagaa 181447
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 tccaaaagacaaaaagaagtc 38 ||||||||||||||||||||| Sbjct: 462166 tccaaaagacaaaaagaagtc 462146
>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11, complete sequence Length = 198600 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 taataataacataacataaca 82 ||||||||||||||||||||| Sbjct: 17835 taataataacataacataaca 17815
>emb|CR450826.8| Zebrafish DNA sequence from clone CH211-145J10 in linkage group 12, complete sequence Length = 144762 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 ataataacataacataacaac 84 ||||||||||||||||||||| Sbjct: 50230 ataataacataacataacaac 50250
>emb|Z46676.2|CEC08B11 Caenorhabditis elegans Cosmid C08B11, complete sequence Length = 26322 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 accagcttgaatttatccaaa 23 ||||||||||||||||||||| Sbjct: 10372 accagcttgaatttatccaaa 10392
>emb|AL139387.12| Human DNA sequence from clone RP11-12I14 on chromosome 6, complete sequence Length = 83352 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 aaaacgaaccaatcacctgaa 262 ||||||||||||||||||||| Sbjct: 50716 aaaacgaaccaatcacctgaa 50696
>emb|BX571718.9| Zebrafish DNA sequence from clone DKEYP-111A10 in linkage group 14, complete sequence Length = 168697 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 atccaaaagacaaaaagaagt 37 ||||||||||||||||||||| Sbjct: 2002 atccaaaagacaaaaagaagt 2022
>ref|NM_063278.2| Caenorhabditis elegans C08B11.3 (C08B11.3) mRNA, complete cds Length = 4377 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 accagcttgaatttatccaaa 23 ||||||||||||||||||||| Sbjct: 1154 accagcttgaatttatccaaa 1134
>gb|AY900582.1| Monascus pilosus non-LTR retrotransposon MRT1, complete sequence; DNA primase, matrix protein, and exonuclease genes, complete cds; non-LTR retrotransposon MRT2, complete sequence; and unknown genes Length = 24200 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 taataataacataacataaca 82 ||||||||||||||||||||| Sbjct: 744 taataataacataacataaca 724
>emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 in linkage group 14, complete sequence Length = 183670 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 atccaaaagacaaaaagaagt 37 ||||||||||||||||||||| Sbjct: 149965 atccaaaagacaaaaagaagt 149985
>gb|DQ299900.1| Monascus pilosus clone BAC mps13 MRT non-LTR retrotransposon gag-like protein and reverse transcriptase genes, complete cds Length = 5900 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 taataataacataacataaca 82 ||||||||||||||||||||| Sbjct: 5766 taataataacataacataaca 5786
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome Length = 1796846 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 tccaaaagacaaaaagaagtc 38 ||||||||||||||||||||| Sbjct: 466977 tccaaaagacaaaaagaagtc 466957
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ataatgataatacgagcaaa 127 |||||||||||||||||||| Sbjct: 903394 ataatgataatacgagcaaa 903413
>gb|AC146452.3| Pan troglodytes BAC clone CH251-483N3 from Y, complete sequence Length = 215209 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aataataacataacataaca 82 |||||||||||||||||||| Sbjct: 120261 aataataacataacataaca 120280
>gb|AC123859.4| Mus musculus BAC clone RP23-346B13 from chromosome 3, complete sequence Length = 221423 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 agaagtcttcaaactgccac 51 |||||||||||||||||||| Sbjct: 104855 agaagtcttcaaactgccac 104836
>gb|AC116459.8| Mus musculus, clone RP23-35F4, complete sequence Length = 215030 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 caaaaagaagtcttcaaactgcca 50 ||||||||||| |||||||||||| Sbjct: 67243 caaaaagaagtattcaaactgcca 67220
>emb|AL031905.7|HS460D19 Human DNA sequence from clone RP3-460D19 on chromosome 6p21.2-22.1 Contains part of the gene for a novel protein (contains KIAA1880 and FLJ32945), complete sequence Length = 98864 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aataataacataacataaca 82 |||||||||||||||||||| Sbjct: 10519 aataataacataacataaca 10538
>gb|AC084083.10| Homo sapiens chromosome 8, clone RP11-550A5, complete sequence Length = 209859 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tatccaaaagacaaaaagaa 35 |||||||||||||||||||| Sbjct: 116840 tatccaaaagacaaaaagaa 116859
>dbj|BS000639.1| Pan troglodytes chromosome Y clone:PTB-193I20, complete sequences Length = 86000 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aataataacataacataaca 82 |||||||||||||||||||| Sbjct: 29135 aataataacataacataaca 29116
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aataataacataacataaca 82 |||||||||||||||||||| Sbjct: 16270243 aataataacataacataaca 16270262
>gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete sequence Length = 112322 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aataataacataacataaca 82 |||||||||||||||||||| Sbjct: 58484 aataataacataacataaca 58465
>gb|AC104704.1| Drosophila melanogaster 3L BAC RP98-8H6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169705 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 taataataacataacataacaact 85 ||||||||| |||||||||||||| Sbjct: 66454 taataataaaataacataacaact 66477
>gb|AC117521.2| Homo sapiens chromosome 5 clone RP11-1015H3, complete sequence Length = 171405 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 16 tatccaaaagacaaaaagaagtcttcaa 43 |||||||||||||| | ||||||||||| Sbjct: 124720 tatccaaaagacaatatgaagtcttcaa 124693
>gb|AC010448.7| Homo sapiens chromosome 5 clone CTD-2237D2, complete sequence Length = 140090 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 16 tatccaaaagacaaaaagaagtcttcaa 43 |||||||||||||| | ||||||||||| Sbjct: 67419 tatccaaaagacaatatgaagtcttcaa 67446
>gb|AC158361.3| Mus musculus BAC clone RP23-227A12 from chromosome 3, complete sequence Length = 211804 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 agaagtcttcaaactgccac 51 |||||||||||||||||||| Sbjct: 205798 agaagtcttcaaactgccac 205817
>gb|AC139667.5| Homo sapiens 3 BAC RP11-88B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135668 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aataataacataacataaca 82 |||||||||||||||||||| Sbjct: 112568 aataataacataacataaca 112549
>gb|AC021210.4|AC021210 Homo sapiens BAC clone RP11-389F23 from Y, complete sequence Length = 63459 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aataataacataacataaca 82 |||||||||||||||||||| Sbjct: 18914 aataataacataacataaca 18895
>gb|AC063956.7|AC063956 Homo sapiens 4 BAC RP11-529K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 141568 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aataacataacataacaact 85 |||||||||||||||||||| Sbjct: 9306 aataacataacataacaact 9287
>gb|AC010283.5|AC010283 Homo sapiens chromosome 5 clone CTC-555J2, complete sequence Length = 157896 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 16 tatccaaaagacaaaaagaagtcttcaa 43 |||||||||||||| | ||||||||||| Sbjct: 88124 tatccaaaagacaatatgaagtcttcaa 88151
>emb|CR749743.13| Zebrafish DNA sequence from clone DKEY-97M3 in linkage group 4, complete sequence Length = 177044 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ataataacataacataacaa 83 |||||||||||||||||||| Sbjct: 172815 ataataacataacataacaa 172834
>emb|BX293564.5| Zebrafish DNA sequence from clone DKEYP-7F8 in linkage group 20, complete sequence Length = 145495 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aataacataacataacaact 85 |||||||||||||||||||| Sbjct: 40079 aataacataacataacaact 40098
>gb|AE003527.3| Drosophila melanogaster chromosome 3L, section 58 of 83 of the complete sequence Length = 279904 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 taataataacataacataacaact 85 ||||||||| |||||||||||||| Sbjct: 184220 taataataaaataacataacaact 184243
>dbj|AP003558.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-693A6, complete sequence Length = 182976 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 atttatccaaaagacaaaaa 32 |||||||||||||||||||| Sbjct: 71030 atttatccaaaagacaaaaa 71049
>gb|AF027807.1|AF027807 Homo sapiens beta-casein (CSN2) gene, complete cds Length = 19924 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aataacataacataacaact 85 |||||||||||||||||||| Sbjct: 7945 aataacataacataacaact 7964
>gb|DQ299897.1| Monascus pilosus clone BAC mps02 MRT non-LTR retrotransposon gag-like protein and reverse transcriptase genes, complete cds Length = 5600 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 taataataacataacataac 81 |||||||||||||||||||| Sbjct: 5390 taataataacataacataac 5409
>dbj|AP006865.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT37H21, TM1032, complete sequence Length = 95067 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aatttatccaaaagacaaaa 31 |||||||||||||||||||| Sbjct: 27603 aatttatccaaaagacaaaa 27622
>gb|AC104431.2| Homo sapiens chromosome 8 clone RP11-550A5 map 8q24.2, complete sequence Length = 209870 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tatccaaaagacaaaaagaa 35 |||||||||||||||||||| Sbjct: 93019 tatccaaaagacaaaaagaa 93000
>dbj|AP004249.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-743I15, complete sequences Length = 191109 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 atttatccaaaagacaaaaa 32 |||||||||||||||||||| Sbjct: 166016 atttatccaaaagacaaaaa 166035
>dbj|D85380.1| Homo sapiens gene for beta-casein, 5' flanking region Length = 2104 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aataacataacataacaact 85 |||||||||||||||||||| Sbjct: 548 aataacataacataacaact 567 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,901,726 Number of Sequences: 3902068 Number of extensions: 2901726 Number of successful extensions: 79079 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78925 Number of HSP's gapped (non-prelim): 154 length of query: 341 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 319 effective length of database: 17,147,199,772 effective search space: 5469956727268 effective search space used: 5469956727268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)