>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)|
          Length = 1778

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = -1

Query: 432  VNRKTSEPYTEGPRVDKYKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 256
            ++R+T EP  + P+  +Y + + +    +  EFI F+   G+W FKV+HFS YG  + E
Sbjct: 888  LSRETREPIKD-PQNPRYIQHVKRLHRIKDTEFIDFN--DGKWIFKVQHFSRYGLLDDE 943

>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore|
           protein NUP145) [Contains: Nucleoporin NUP145N
           (N-NUP145); Nucleoporin NUP145C (C-NUP145)]
          Length = 1317

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -1

Query: 432 VNRKTSEPYTEGPRVDKYKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAEV 253
           V++KT +P  +  +  +++    K    + + +IS++   G W FKV HFS +G    E 
Sbjct: 556 VDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHFSIWGLVNEED 615

Query: 252 GLID 241
             ID
Sbjct: 616 AEID 619

>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor|
           [Contains: Nuclear pore complex protein Nup98
           (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore
           complex protein Nup96 (Nucleoporin Nup96) (96 kDa
           nucleoporin)]
          Length = 1729

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 381 YKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 256
           Y+  L   + +QG +F  +    G W FKV HFS YG  +++
Sbjct: 848 YEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSD 889

>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98|
           kDa nucleoporin)
          Length = 937

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 381 YKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 256
           Y+  L   + +QG +F  +    G W FKV HFS YG  +++
Sbjct: 847 YEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSD 888

>CE290_HUMAN (O15078) Centrosomal protein Cep290|
          Length = 1539

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/85 (23%), Positives = 39/85 (45%)
 Frame = +2

Query: 17  LYFRQETTINSLIQSTHTHTHSTKLAQGCALHKQERFVQNIETKDKPHSIIQKTKASQ*E 196
           L ++ ++   SLI   H H  S +L++  AL K E     ++ K + +++  + K  + E
Sbjct: 248 LDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQ-KMEAYNLRLEQKLDEKE 306

Query: 197 SSEISYNFHGRGYMESIRPTSASAK 271
            +       GR   + +R T  S +
Sbjct: 307 QALYYARLEGRNRAKHLRQTIQSLR 331


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,903,742
Number of Sequences: 219361
Number of extensions: 867943
Number of successful extensions: 2455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2452
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)